Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS10855

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,394,719	+				+0.5
2,394,719	+				-0.7
2,394,719	+				-2.3
2,394,719	+				+0.1
2,394,719	+				+0.3
2,394,719	+				-0.2
2,394,719	+				-1.3
2,394,719	+				-0.1
2,394,720	-				-1.0
2,394,720	-				+0.3
2,394,720	-				+1.3
2,394,720	-				+2.1
2,394,720	-				-1.1
2,394,724	+				+0.6
2,394,724	+				+1.4
2,394,724	+				-0.2
2,394,724	+				-0.1
2,394,724	+				+1.4
2,394,725	-				+0.5
2,394,725	-				+0.4
2,394,725	-				-1.0
2,394,725	-				+0.7
2,394,928	+		LRK55_RS10850	0.18	-0.5
2,394,981	+		LRK55_RS10850	0.24	+0.4
2,394,981	+		LRK55_RS10850	0.24	-0.0
2,394,981	+		LRK55_RS10850	0.24	+0.1
2,394,981	+		LRK55_RS10850	0.24	+0.8
2,394,981	+		LRK55_RS10850	0.24	+0.1
2,394,982	-		LRK55_RS10850	0.24	+0.2
2,394,982	-		LRK55_RS10850	0.24	+0.7
2,394,982	-		LRK55_RS10850	0.24	+2.4
2,394,982	-		LRK55_RS10850	0.24	+0.7
2,394,982	-		LRK55_RS10850	0.24	-0.1
2,394,982	-		LRK55_RS10850	0.24	-0.0
2,394,982	-		LRK55_RS10850	0.24	+0.1
2,395,083	+		LRK55_RS10850	0.36	-0.5
2,395,083	+		LRK55_RS10850	0.36	+0.7
2,395,084	-		LRK55_RS10850	0.36	-1.0
2,395,084	-		LRK55_RS10850	0.36	-0.3
2,395,084	-		LRK55_RS10850	0.36	+0.1
2,395,093	+		LRK55_RS10850	0.37	+1.3
2,395,094	-		LRK55_RS10850	0.37	+0.3
2,395,094	-		LRK55_RS10850	0.37	+0.4
2,395,094	-		LRK55_RS10850	0.37	+0.3
2,395,095	+		LRK55_RS10850	0.38	+0.6
2,395,095	+		LRK55_RS10850	0.38	+0.8
2,395,095	+		LRK55_RS10850	0.38	-0.4
2,395,095	+		LRK55_RS10850	0.38	+0.1
2,395,095	+		LRK55_RS10850	0.38	-0.5
2,395,095	+		LRK55_RS10850	0.38	-0.5
2,395,095	+		LRK55_RS10850	0.38	-0.3
2,395,095	+		LRK55_RS10850	0.38	+0.0
2,395,095	+		LRK55_RS10850	0.38	+2.7
2,395,095	+		LRK55_RS10850	0.38	-0.4
2,395,096	-		LRK55_RS10850	0.38	-0.2
2,395,096	-		LRK55_RS10850	0.38	-1.3
2,395,096	-		LRK55_RS10850	0.38	+0.2
2,395,096	-		LRK55_RS10850	0.38	+0.0
2,395,096	-		LRK55_RS10850	0.38	-1.9
2,395,096	-		LRK55_RS10850	0.38	+0.5
2,395,096	-		LRK55_RS10850	0.38	-0.4
2,395,096	-		LRK55_RS10850	0.38	+0.1
2,395,096	-		LRK55_RS10850	0.38	-0.9
2,395,096	-		LRK55_RS10850	0.38	-0.2
2,395,096	-		LRK55_RS10850	0.38	-0.5
2,395,096	-		LRK55_RS10850	0.38	-0.5
2,395,146	+		LRK55_RS10850	0.43	-0.0
2,395,147	-		LRK55_RS10850	0.44	-1.2
2,395,147	-		LRK55_RS10850	0.44	-0.3
2,395,395	+		LRK55_RS10850	0.72	-0.0
2,395,395	+		LRK55_RS10850	0.72	+0.3
2,395,395	+		LRK55_RS10850	0.72	+0.1
2,395,395	+		LRK55_RS10850	0.72	-0.2
2,395,395	+		LRK55_RS10850	0.72	+0.1
2,395,395	+		LRK55_RS10850	0.72	-0.2
2,395,395	+		LRK55_RS10850	0.72	+0.2
2,395,395	+		LRK55_RS10850	0.72	-0.3
2,395,395	+		LRK55_RS10850	0.72	+0.5
2,395,395	+		LRK55_RS10850	0.72	-0.1
2,395,395	+		LRK55_RS10850	0.72	+1.1
2,395,395	+		LRK55_RS10850	0.72	-0.0
2,395,396	-		LRK55_RS10850	0.73	+0.0
2,395,396	-		LRK55_RS10850	0.73	+0.6
2,395,396	-		LRK55_RS10850	0.73	+0.6
2,395,396	-		LRK55_RS10850	0.73	+1.0
2,395,396	-		LRK55_RS10850	0.73	+0.3
2,395,396	-		LRK55_RS10850	0.73	+1.1
2,395,396	-		LRK55_RS10850	0.73	-0.3
2,395,430	+		LRK55_RS10850	0.77	-0.9
2,395,430	+		LRK55_RS10850	0.77	+0.1
2,395,430	+		LRK55_RS10850	0.77	+0.6
2,395,430	+		LRK55_RS10850	0.77	+0.9
2,395,430	+		LRK55_RS10850	0.77	+0.2
2,395,430	+		LRK55_RS10850	0.77	-1.1
2,395,431	-		LRK55_RS10850	0.77	-0.2
2,395,431	-		LRK55_RS10850	0.77	-0.0
2,395,431	-		LRK55_RS10850	0.77	+0.8
2,395,515	+		LRK55_RS10850	0.86	-0.1
2,395,515	+		LRK55_RS10850	0.86	+0.5
2,395,515	+		LRK55_RS10850	0.86	+0.7
2,395,515	+		LRK55_RS10850	0.86	-0.3
2,395,515	+		LRK55_RS10850	0.86	-1.2
2,395,516	-		LRK55_RS10850	0.87	-0.9
2,395,557	+				-0.6
2,395,558	-				-0.7
2,395,558	-				+0.7
2,395,695	-				+0.5
2,395,695	-				+0.1
2,395,695	-				-0.7
2,395,720	-				+0.6
2,395,720	-				+0.8
2,395,720	-				+0.5
2,395,773	+				-0.3
2,395,773	+				+1.3
2,395,774	-				+2.5
2,395,774	-				+0.3
2,395,896	+		LRK55_RS10855	0.30	-0.3
2,395,896	+		LRK55_RS10855	0.30	+2.9
2,395,896	+		LRK55_RS10855	0.30	+0.3
2,395,896	+		LRK55_RS10855	0.30	+0.8
2,395,897	-		LRK55_RS10855	0.30	-0.4
2,395,897	-		LRK55_RS10855	0.30	-0.6
2,395,897	-		LRK55_RS10855	0.30	-0.5
2,395,897	-		LRK55_RS10855	0.30	+0.0
2,396,055	+		LRK55_RS10855	0.56	+0.3
2,396,056	-		LRK55_RS10855	0.56	+0.1
2,396,079	+		LRK55_RS10855	0.60	+0.9
2,396,118	+		LRK55_RS10855	0.67	+0.4
2,396,118	+		LRK55_RS10855	0.67	+0.1
2,396,119	-		LRK55_RS10855	0.67	+0.1
2,396,210	+		LRK55_RS10855	0.82	+0.8
2,396,210	+		LRK55_RS10855	0.82	-1.2
2,396,210	+		LRK55_RS10855	0.82	+1.1
2,396,211	-		LRK55_RS10855	0.82	+0.2
2,396,211	-		LRK55_RS10855	0.82	+0.1
2,396,211	-		LRK55_RS10855	0.82	+1.1
2,396,286	+				+0.7
2,396,286	+				-1.1
2,396,286	+				-0.6
2,396,286	+				-0.2
2,396,286	+				-1.7
2,396,286	+				-0.3
2,396,286	+				-0.1
2,396,286	+				+1.5
2,396,287	-				+0.1
2,396,287	-				+0.7
2,396,287	-				+0.5
2,396,287	-				+1.5
2,396,287	-				-1.6
2,396,287	-				+0.6
2,396,287	-				+0.8
2,396,287	-				-1.5
2,396,287	-				+0.4
2,396,572	+		LRK55_RS10860	0.20	-1.2
2,396,572	+		LRK55_RS10860	0.20	+0.8
2,396,573	-		LRK55_RS10860	0.20	-1.2
2,396,573	-		LRK55_RS10860	0.20	-0.5
2,396,573	-		LRK55_RS10860	0.20	-1.8
2,396,573	-		LRK55_RS10860	0.20	-0.0
2,396,573	-		LRK55_RS10860	0.20	-1.1
2,396,573	-		LRK55_RS10860	0.20	-0.1
2,396,573	-		LRK55_RS10860	0.20	+0.2
2,396,605	+		LRK55_RS10860	0.23	-1.1
2,396,605	+		LRK55_RS10860	0.23	-0.6
2,396,606	-		LRK55_RS10860	0.23	-0.4
2,396,606	-		LRK55_RS10860	0.23	+0.4
2,396,606	-		LRK55_RS10860	0.23	+0.1
2,396,606	-		LRK55_RS10860	0.23	+0.7
2,396,914	-		LRK55_RS10860	0.47	+0.3
2,396,926	+		LRK55_RS10860	0.48	-0.1
2,396,927	-		LRK55_RS10860	0.48	+0.3
2,396,927	-		LRK55_RS10860	0.48	+0.1
2,396,928	+		LRK55_RS10860	0.49	+0.6
2,396,941	+		LRK55_RS10860	0.50	+0.1
2,396,941	+		LRK55_RS10860	0.50	-1.0
2,396,941	+		LRK55_RS10860	0.50	-0.7
2,396,942	-		LRK55_RS10860	0.50	-0.2
2,396,942	-		LRK55_RS10860	0.50	+0.7
2,396,942	-		LRK55_RS10860	0.50	+0.4
2,396,942	-		LRK55_RS10860	0.50	-0.2
2,396,942	-		LRK55_RS10860	0.50	+0.6
2,397,133	+		LRK55_RS10860	0.65	-0.0
2,397,133	+		LRK55_RS10860	0.65	-0.6
2,397,133	+		LRK55_RS10860	0.65	+2.0
2,397,133	+		LRK55_RS10860	0.65	-0.9
2,397,134	-		LRK55_RS10860	0.65	+1.1
2,397,134	-		LRK55_RS10860	0.65	-0.5
2,397,134	-		LRK55_RS10860	0.65	+0.8
2,397,134	-		LRK55_RS10860	0.65	-0.5
2,397,136	+		LRK55_RS10860	0.65	+1.7
2,397,136	+		LRK55_RS10860	0.65	+1.6
2,397,136	+		LRK55_RS10860	0.65	+0.1
2,397,136	+		LRK55_RS10860	0.65	+0.3
2,397,137	-		LRK55_RS10860	0.65	+0.7
2,397,137	-		LRK55_RS10860	0.65	-0.2
2,397,137	-		LRK55_RS10860	0.65	-0.0
2,397,137	-		LRK55_RS10860	0.65	+0.2
2,397,137	-		LRK55_RS10860	0.65	+0.2
2,397,137	-		LRK55_RS10860	0.65	+0.5
2,397,198	+		LRK55_RS10860	0.70	-0.2
2,397,199	-		LRK55_RS10860	0.70	+1.5