Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09755

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,132,589	+		LRK55_RS09750	0.26	+0.1
2,132,590	-		LRK55_RS09750	0.26	+1.4
2,132,590	-		LRK55_RS09750	0.26	-0.7
2,132,590	-		LRK55_RS09750	0.26	-0.7
2,132,590	-		LRK55_RS09750	0.26	-0.6
2,132,590	-		LRK55_RS09750	0.26	+1.6
2,132,623	+		LRK55_RS09750	0.29	-0.2
2,132,623	+		LRK55_RS09750	0.29	+1.2
2,132,623	+		LRK55_RS09750	0.29	+0.5
2,132,624	-		LRK55_RS09750	0.30	-0.4
2,132,624	-		LRK55_RS09750	0.30	-1.9
2,132,624	-		LRK55_RS09750	0.30	-0.5
2,132,624	-		LRK55_RS09750	0.30	-0.4
2,132,929	+		LRK55_RS09750	0.60	-0.3
2,132,929	+		LRK55_RS09750	0.60	-1.8
2,132,929	+		LRK55_RS09750	0.60	-0.6
2,132,929	+		LRK55_RS09750	0.60	+0.4
2,132,929	+		LRK55_RS09750	0.60	+0.8
2,132,930	-		LRK55_RS09750	0.60	+0.2
2,132,930	-		LRK55_RS09750	0.60	-0.9
2,132,930	-		LRK55_RS09750	0.60	+0.6
2,132,930	-		LRK55_RS09750	0.60	-0.6
2,132,930	-		LRK55_RS09750	0.60	+0.5
2,133,011	-		LRK55_RS09750	0.68	+0.6
2,133,011	-		LRK55_RS09750	0.68	-0.4
2,133,118	+		LRK55_RS09750	0.79	+0.7
2,133,118	+		LRK55_RS09750	0.79	+0.1
2,133,118	+		LRK55_RS09750	0.79	+0.4
2,133,118	+		LRK55_RS09750	0.79	-0.3
2,133,119	-		LRK55_RS09750	0.79	+1.7
2,133,119	-		LRK55_RS09750	0.79	-0.8
2,133,119	-		LRK55_RS09750	0.79	-1.1
2,133,119	-		LRK55_RS09750	0.79	-0.3
2,133,183	+		LRK55_RS09750	0.85	+0.9
2,133,183	+		LRK55_RS09750	0.85	+0.7
2,133,183	+		LRK55_RS09750	0.85	-0.1
2,133,183	+		LRK55_RS09750	0.85	+1.6
2,133,183	+		LRK55_RS09750	0.85	-0.8
2,133,183	+		LRK55_RS09750	0.85	-0.5
2,133,183	+		LRK55_RS09750	0.85	-1.0
2,133,183	+		LRK55_RS09750	0.85	-0.8
2,133,183	+		LRK55_RS09750	0.85	-0.1
2,133,183	+		LRK55_RS09750	0.85	-0.8
2,133,183	+		LRK55_RS09750	0.85	+0.4
2,133,183	+		LRK55_RS09750	0.85	+0.0
2,133,183	+		LRK55_RS09750	0.85	-1.0
2,133,184	-		LRK55_RS09750	0.85	-0.5
2,133,184	-		LRK55_RS09750	0.85	+0.6
2,133,184	-		LRK55_RS09750	0.85	+2.0
2,133,184	-		LRK55_RS09750	0.85	+0.3
2,133,184	-		LRK55_RS09750	0.85	-0.8
2,133,184	-		LRK55_RS09750	0.85	-0.7
2,133,184	-		LRK55_RS09750	0.85	+0.3
2,133,184	-		LRK55_RS09750	0.85	-2.0
2,133,405	+				+0.0
2,133,405	+				-0.4
2,133,405	+				-1.2
2,133,405	+				-0.1
2,133,405	+				-0.0
2,133,405	+				-0.8
2,133,406	-				-0.9
2,133,406	-				-0.1
2,133,406	-				-0.3
2,133,406	-				-0.9
2,133,406	-				-0.2
2,133,406	-				+0.1
2,133,406	-				-0.7
2,133,406	-				+1.4
2,133,430	-				-0.4
2,133,430	-				+0.0
2,133,430	-				+0.9
2,133,430	-				-1.2
2,133,430	-				+1.2
2,133,462	+				+0.4
2,133,462	+				-1.7
2,133,462	+				+0.4
2,133,462	+				-0.9
2,133,462	+				+0.1
2,133,462	+				-0.4
2,133,462	+				+1.5
2,133,462	+				+0.7
2,133,462	+				-1.0
2,133,462	+				+0.1
2,133,462	+				+0.6
2,133,462	+				+0.5
2,133,463	-		LRK55_RS09755	0.10	+0.4
2,133,463	-		LRK55_RS09755	0.10	+0.5
2,133,463	-		LRK55_RS09755	0.10	-1.9
2,133,463	-		LRK55_RS09755	0.10	-0.3
2,133,463	-		LRK55_RS09755	0.10	+0.9
2,133,463	-		LRK55_RS09755	0.10	+1.8
2,133,463	-		LRK55_RS09755	0.10	-1.2
2,133,463	-		LRK55_RS09755	0.10	-0.7
2,133,463	-		LRK55_RS09755	0.10	-0.4
2,133,463	-		LRK55_RS09755	0.10	+0.5
2,133,463	-		LRK55_RS09755	0.10	-1.6
2,133,463	-		LRK55_RS09755	0.10	-0.0
2,133,463	-		LRK55_RS09755	0.10	-0.8
2,133,463	-		LRK55_RS09755	0.10	-0.8
2,133,463	-		LRK55_RS09755	0.10	-2.6
2,133,463	-		LRK55_RS09755	0.10	-0.3
2,133,463	-		LRK55_RS09755	0.10	+0.1
2,133,463	-		LRK55_RS09755	0.10	+0.2
2,133,463	-		LRK55_RS09755	0.10	+0.8
2,133,463	-		LRK55_RS09755	0.10	-0.3
2,133,615	+		LRK55_RS09755	0.22	-0.2
2,133,615	+		LRK55_RS09755	0.22	+1.0
2,133,615	+		LRK55_RS09755	0.22	-0.9
2,133,616	-		LRK55_RS09755	0.22	+0.6
2,133,616	-		LRK55_RS09755	0.22	-1.1
2,133,636	+		LRK55_RS09755	0.24	-0.3
2,133,636	+		LRK55_RS09755	0.24	+1.4
2,133,636	+		LRK55_RS09755	0.24	+0.8
2,133,636	+		LRK55_RS09755	0.24	+0.6
2,133,636	+		LRK55_RS09755	0.24	+0.7
2,133,636	+		LRK55_RS09755	0.24	-0.0
2,133,636	+		LRK55_RS09755	0.24	-0.6
2,133,636	+		LRK55_RS09755	0.24	+0.1
2,133,636	+		LRK55_RS09755	0.24	-1.0
2,133,636	+		LRK55_RS09755	0.24	-0.1
2,133,636	+		LRK55_RS09755	0.24	+0.5
2,133,636	+		LRK55_RS09755	0.24	+0.4
2,133,636	+		LRK55_RS09755	0.24	-0.4
2,133,636	+		LRK55_RS09755	0.24	+0.2
2,133,636	+		LRK55_RS09755	0.24	-1.6
2,133,636	+		LRK55_RS09755	0.24	+1.1
2,133,636	+		LRK55_RS09755	0.24	-0.1
2,133,636	+		LRK55_RS09755	0.24	+0.0
2,133,636	+		LRK55_RS09755	0.24	-1.0
2,133,636	+		LRK55_RS09755	0.24	+0.4
2,133,636	+		LRK55_RS09755	0.24	-0.9
2,133,636	+		LRK55_RS09755	0.24	+0.5
2,133,636	+		LRK55_RS09755	0.24	-0.2
2,133,637	-		LRK55_RS09755	0.24	-2.4
2,133,637	-		LRK55_RS09755	0.24	+1.3
2,133,637	-		LRK55_RS09755	0.24	-0.3
2,133,637	-		LRK55_RS09755	0.24	-0.0
2,133,637	-		LRK55_RS09755	0.24	-0.7
2,133,637	-		LRK55_RS09755	0.24	+0.0
2,133,637	-		LRK55_RS09755	0.24	-1.0
2,133,637	-		LRK55_RS09755	0.24	-0.6
2,133,637	-		LRK55_RS09755	0.24	+0.8
2,133,637	-		LRK55_RS09755	0.24	+1.2
2,133,637	-		LRK55_RS09755	0.24	-0.1
2,133,637	-		LRK55_RS09755	0.24	-0.1
2,133,637	-		LRK55_RS09755	0.24	+1.4
2,133,637	-		LRK55_RS09755	0.24	-0.8
2,133,637	-		LRK55_RS09755	0.24	+0.3
2,133,637	-		LRK55_RS09755	0.24	-0.9
2,133,637	-		LRK55_RS09755	0.24	+0.4
2,133,637	-		LRK55_RS09755	0.24	+0.3
2,133,637	-		LRK55_RS09755	0.24	-0.4
2,133,637	-		LRK55_RS09755	0.24	+0.5
2,133,637	-		LRK55_RS09755	0.24	-0.5
2,133,637	-		LRK55_RS09755	0.24	+0.8
2,133,637	-		LRK55_RS09755	0.24	-1.6
2,133,637	-		LRK55_RS09755	0.24	+0.2
2,133,687	+		LRK55_RS09755	0.28	-0.9
2,133,687	+		LRK55_RS09755	0.28	+0.0
2,133,687	+		LRK55_RS09755	0.28	-0.1
2,133,687	+		LRK55_RS09755	0.28	+0.6
2,133,687	+		LRK55_RS09755	0.28	+0.4
2,133,687	+		LRK55_RS09755	0.28	+0.6
2,133,687	+		LRK55_RS09755	0.28	+0.7
2,133,687	+		LRK55_RS09755	0.28	+0.5
2,133,687	+		LRK55_RS09755	0.28	+0.4
2,133,688	-		LRK55_RS09755	0.28	-0.0
2,133,688	-		LRK55_RS09755	0.28	+0.2
2,133,688	-		LRK55_RS09755	0.28	+0.3
2,133,688	-		LRK55_RS09755	0.28	+0.8
2,133,688	-		LRK55_RS09755	0.28	-1.9
2,133,688	-		LRK55_RS09755	0.28	+0.4
2,133,688	-		LRK55_RS09755	0.28	-0.2
2,133,688	-		LRK55_RS09755	0.28	-0.5
2,133,688	-		LRK55_RS09755	0.28	-0.3
2,133,688	-		LRK55_RS09755	0.28	-0.8
2,133,688	-		LRK55_RS09755	0.28	-0.4
2,133,688	-		LRK55_RS09755	0.28	+0.2
2,133,810	+		LRK55_RS09755	0.38	+0.2
2,133,810	+		LRK55_RS09755	0.38	-0.2
2,133,811	-		LRK55_RS09755	0.38	-0.1
2,133,811	-		LRK55_RS09755	0.38	+0.5
2,133,811	-		LRK55_RS09755	0.38	+0.5
2,133,811	-		LRK55_RS09755	0.38	+2.2
2,133,811	-		LRK55_RS09755	0.38	+0.2
2,133,969	+		LRK55_RS09755	0.50	+0.3
2,133,970	-		LRK55_RS09755	0.51	+0.7
2,134,023	+		LRK55_RS09755	0.55	+0.0
2,134,023	+		LRK55_RS09755	0.55	+1.5
2,134,024	-		LRK55_RS09755	0.55	+0.8
2,134,024	-		LRK55_RS09755	0.55	+0.8
2,134,125	+		LRK55_RS09755	0.63	-0.2
2,134,125	+		LRK55_RS09755	0.63	+1.1
2,134,125	+		LRK55_RS09755	0.63	-1.8
2,134,125	+		LRK55_RS09755	0.63	-0.1
2,134,125	+		LRK55_RS09755	0.63	-0.1
2,134,125	+		LRK55_RS09755	0.63	-0.3
2,134,125	+		LRK55_RS09755	0.63	+0.9
2,134,125	+		LRK55_RS09755	0.63	-0.6
2,134,125	+		LRK55_RS09755	0.63	-1.4
2,134,126	-		LRK55_RS09755	0.63	+0.6
2,134,126	-		LRK55_RS09755	0.63	+0.3
2,134,126	-		LRK55_RS09755	0.63	+0.2
2,134,126	-		LRK55_RS09755	0.63	+0.4
2,134,126	-		LRK55_RS09755	0.63	-0.5
2,134,126	-		LRK55_RS09755	0.63	-1.4
2,134,126	-		LRK55_RS09755	0.63	-0.9
2,134,195	-		LRK55_RS09755	0.69	+0.2
2,134,204	-		LRK55_RS09755	0.69	+0.5
2,134,374	+		LRK55_RS09755	0.83	+0.5
2,134,374	+		LRK55_RS09755	0.83	-0.3
2,134,374	+		LRK55_RS09755	0.83	+0.2
2,134,374	+		LRK55_RS09755	0.83	+0.4
2,134,374	+		LRK55_RS09755	0.83	-0.1
2,134,374	+		LRK55_RS09755	0.83	+0.1
2,134,375	-		LRK55_RS09755	0.83	+1.9
2,134,375	-		LRK55_RS09755	0.83	+0.0
2,134,375	-		LRK55_RS09755	0.83	+0.0
2,134,375	-		LRK55_RS09755	0.83	-2.0
2,134,375	-		LRK55_RS09755	0.83	-0.9
2,134,512	-				+0.0
2,134,614	+				-1.3
2,134,614	+				+0.0
2,134,614	+				+0.2
2,134,615	-				+0.1
2,134,615	-				-1.3
2,134,615	-				+0.6
2,134,634	+				-0.2
2,134,855	+				+0.3
2,134,855	+				+0.0
2,134,855	+				+0.9
2,134,855	+				+0.2
2,134,855	+				+0.8
2,134,855	+				-1.2
2,134,855	+				+0.8
2,134,855	+				+1.7
2,134,855	+				-0.2
2,134,856	-				+0.1
2,134,856	-				+0.3
2,134,856	-				-1.6
2,134,856	-				-0.9
2,134,856	-				+0.1
2,134,856	-				+0.7
2,134,856	-				-0.0
2,134,957	+		LRK55_RS09760	0.12	-0.4
2,134,957	+		LRK55_RS09760	0.12	+0.5
2,134,957	+		LRK55_RS09760	0.12	-0.4
2,134,958	-		LRK55_RS09760	0.12	-0.2
2,134,958	-		LRK55_RS09760	0.12	-0.1
2,135,140	+		LRK55_RS09760	0.23	+1.6
2,135,141	-		LRK55_RS09760	0.23	+1.8
2,135,141	-		LRK55_RS09760	0.23	-0.4
2,135,141	-		LRK55_RS09760	0.23	-0.4
2,135,141	-		LRK55_RS09760	0.23	+1.0
2,135,452	+		LRK55_RS09760	0.41	+1.4
2,135,452	+		LRK55_RS09760	0.41	-0.2
2,135,452	+		LRK55_RS09760	0.41	-0.4
2,135,452	+		LRK55_RS09760	0.41	-0.1
2,135,452	+		LRK55_RS09760	0.41	+1.1
2,135,453	-		LRK55_RS09760	0.41	-0.1
2,135,453	-		LRK55_RS09760	0.41	-1.4
2,135,453	-		LRK55_RS09760	0.41	+1.2
2,135,453	-		LRK55_RS09760	0.41	+1.2
2,135,453	-		LRK55_RS09760	0.41	+0.5
2,135,453	-		LRK55_RS09760	0.41	-0.1
2,135,453	-		LRK55_RS09760	0.41	-0.8
2,135,453	-		LRK55_RS09760	0.41	+0.2
2,135,453	-		LRK55_RS09760	0.41	-0.5
2,135,453	-		LRK55_RS09760	0.41	+0.2
2,135,453	-		LRK55_RS09760	0.41	+0.4