Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09635

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,102,947	-		LRK55_RS09630	0.16	+0.4
2,102,973	+		LRK55_RS09630	0.19	-2.0
2,102,973	+		LRK55_RS09630	0.19	-0.6
2,102,973	+		LRK55_RS09630	0.19	+0.3
2,102,973	+		LRK55_RS09630	0.19	-0.3
2,102,974	-		LRK55_RS09630	0.19	+0.5
2,102,974	-		LRK55_RS09630	0.19	+0.2
2,103,006	+		LRK55_RS09630	0.23	-0.6
2,103,006	+		LRK55_RS09630	0.23	+0.3
2,103,006	+		LRK55_RS09630	0.23	-1.2
2,103,006	+		LRK55_RS09630	0.23	-0.1
2,103,007	-		LRK55_RS09630	0.23	-0.4
2,103,007	-		LRK55_RS09630	0.23	-1.0
2,103,007	-		LRK55_RS09630	0.23	+0.5
2,103,007	-		LRK55_RS09630	0.23	-0.2
2,103,060	+		LRK55_RS09630	0.29	+0.6
2,103,060	+		LRK55_RS09630	0.29	-0.0
2,103,060	+		LRK55_RS09630	0.29	-0.6
2,103,060	+		LRK55_RS09630	0.29	-2.5
2,103,060	+		LRK55_RS09630	0.29	+1.0
2,103,060	+		LRK55_RS09630	0.29	-0.6
2,103,060	+		LRK55_RS09630	0.29	+1.7
2,103,060	+		LRK55_RS09630	0.29	+0.0
2,103,061	-		LRK55_RS09630	0.29	-0.3
2,103,061	-		LRK55_RS09630	0.29	-0.7
2,103,061	-		LRK55_RS09630	0.29	-0.1
2,103,061	-		LRK55_RS09630	0.29	+0.7
2,103,061	-		LRK55_RS09630	0.29	+0.5
2,103,061	-		LRK55_RS09630	0.29	-0.9
2,103,061	-		LRK55_RS09630	0.29	+0.2
2,103,061	-		LRK55_RS09630	0.29	+0.6
2,103,061	-		LRK55_RS09630	0.29	+1.0
2,103,061	-		LRK55_RS09630	0.29	-0.5
2,103,061	-		LRK55_RS09630	0.29	+0.4
2,103,061	-		LRK55_RS09630	0.29	+0.0
2,103,061	-		LRK55_RS09630	0.29	-0.0
2,103,061	-		LRK55_RS09630	0.29	-0.6
2,103,072	+		LRK55_RS09630	0.30	-0.7
2,103,072	+		LRK55_RS09630	0.30	-2.2
2,103,072	+		LRK55_RS09630	0.30	-0.3
2,103,072	+		LRK55_RS09630	0.30	-0.1
2,103,073	-		LRK55_RS09630	0.30	-0.5
2,103,073	-		LRK55_RS09630	0.30	-0.8
2,103,073	-		LRK55_RS09630	0.30	-0.1
2,103,073	-		LRK55_RS09630	0.30	-0.0
2,103,273	+		LRK55_RS09630	0.53	-0.4
2,103,273	+		LRK55_RS09630	0.53	-1.0
2,103,273	+		LRK55_RS09630	0.53	+0.1
2,103,273	+		LRK55_RS09630	0.53	+0.3
2,103,274	-		LRK55_RS09630	0.54	+0.3
2,103,274	-		LRK55_RS09630	0.54	-1.4
2,103,366	+		LRK55_RS09630	0.64	+0.8
2,103,366	+		LRK55_RS09630	0.64	+0.7
2,103,551	+		LRK55_RS09630	0.85	-0.0
2,103,551	+		LRK55_RS09630	0.85	+1.2
2,103,551	+		LRK55_RS09630	0.85	-0.4
2,103,551	+		LRK55_RS09630	0.85	-0.6
2,103,551	+		LRK55_RS09630	0.85	-0.3
2,103,551	+		LRK55_RS09630	0.85	-0.0
2,103,551	+		LRK55_RS09630	0.85	+0.6
2,103,551	+		LRK55_RS09630	0.85	+0.3
2,103,551	+		LRK55_RS09630	0.85	+0.6
2,103,551	+		LRK55_RS09630	0.85	+0.6
2,103,551	+		LRK55_RS09630	0.85	+0.5
2,103,551	+		LRK55_RS09630	0.85	+0.6
2,103,551	+		LRK55_RS09630	0.85	-0.4
2,103,551	+		LRK55_RS09630	0.85	+0.4
2,103,551	+		LRK55_RS09630	0.85	+1.6
2,103,552	-		LRK55_RS09630	0.86	+0.6
2,103,552	-		LRK55_RS09630	0.86	-1.4
2,103,552	-		LRK55_RS09630	0.86	+0.2
2,103,552	-		LRK55_RS09630	0.86	-0.4
2,103,552	-		LRK55_RS09630	0.86	+0.8
2,103,552	-		LRK55_RS09630	0.86	+0.4
2,103,552	-		LRK55_RS09630	0.86	+0.5
2,103,552	-		LRK55_RS09630	0.86	+1.1
2,103,552	-		LRK55_RS09630	0.86	-0.3
2,103,552	-		LRK55_RS09630	0.86	-0.1
2,103,552	-		LRK55_RS09630	0.86	+0.4
2,103,552	-		LRK55_RS09630	0.86	-0.1
2,103,552	-		LRK55_RS09630	0.86	+0.5
2,103,552	-		LRK55_RS09630	0.86	-0.4
2,103,552	-		LRK55_RS09630	0.86	+2.3
2,103,554	+		LRK55_RS09630	0.86	-0.1
2,103,554	+		LRK55_RS09630	0.86	-0.6
2,103,554	+		LRK55_RS09630	0.86	-0.5
2,103,554	+		LRK55_RS09630	0.86	+0.2
2,103,555	-		LRK55_RS09630	0.86	+0.7
2,103,555	-		LRK55_RS09630	0.86	-0.2
2,103,555	-		LRK55_RS09630	0.86	+0.2
2,103,555	-		LRK55_RS09630	0.86	+0.2
2,103,555	-		LRK55_RS09630	0.86	+0.8
2,103,555	-		LRK55_RS09630	0.86	-0.8
2,103,556	-		LRK55_RS09630	0.86	-0.5
2,103,639	+				+0.0
2,103,639	+				-0.3
2,103,639	+				-0.3
2,103,639	+				+0.6
2,103,639	+				+0.5
2,103,639	+				-0.2
2,103,639	+				+0.1
2,103,639	+				+0.6
2,103,639	+				+0.3
2,103,639	+				+0.8
2,103,639	+				-0.1
2,103,639	+				+0.3
2,103,639	+				-1.4
2,103,639	+				-1.7
2,103,639	+				-0.1
2,103,639	+				-0.3
2,103,639	+				-0.1
2,103,640	-				-0.6
2,103,640	-				-0.9
2,103,640	-				-0.1
2,103,640	-				-0.0
2,103,640	-				-0.0
2,103,640	-				-0.1
2,103,640	-				+0.4
2,103,640	-				-0.4
2,103,640	-				+0.6
2,103,640	-				+0.4
2,103,640	-				-0.3
2,103,640	-				-0.1
2,103,640	-				+0.5
2,103,640	-				+0.6
2,103,640	-				+0.8
2,103,640	-				-0.9
2,103,640	-				+0.5
2,103,640	-				-1.1
2,103,640	-				-0.5
2,103,640	-				+0.6
2,103,640	-				-2.3
2,103,640	-				-3.6
2,103,640	-				+0.6
2,103,640	-				-1.2
2,103,640	-				-0.2
2,103,640	-				+0.1
2,103,640	-				+0.3
2,103,640	-				-0.3
2,103,640	-				-2.0
2,103,640	-				+0.9
2,103,640	-				+1.1
2,103,679	+				-0.1
2,103,715	+				-0.1
2,103,715	+				-0.2
2,103,715	+				-0.6
2,103,715	+				-1.3
2,103,715	+				+0.1
2,103,715	+				+0.1
2,103,715	+				+0.6
2,103,715	+				+1.4
2,103,715	+				+0.9
2,103,715	+				+1.2
2,103,716	-				+1.2
2,103,716	-				+0.3
2,103,716	-				-0.5
2,103,716	-				-0.4
2,103,716	-				+0.3
2,103,716	-				+0.8
2,103,716	-				-0.6
2,104,130	+		LRK55_RS09635	0.39	+1.2
2,104,130	+		LRK55_RS09635	0.39	-0.8
2,104,130	+		LRK55_RS09635	0.39	-1.3
2,104,130	+		LRK55_RS09635	0.39	-1.1
2,104,130	+		LRK55_RS09635	0.39	+0.9
2,104,130	+		LRK55_RS09635	0.39	-0.7
2,104,130	+		LRK55_RS09635	0.39	+0.1
2,104,131	-		LRK55_RS09635	0.39	+0.9
2,104,131	-		LRK55_RS09635	0.39	+0.8
2,104,131	-		LRK55_RS09635	0.39	+0.5
2,104,131	-		LRK55_RS09635	0.39	+0.4
2,104,131	-		LRK55_RS09635	0.39	+0.8
2,104,133	+		LRK55_RS09635	0.39	+0.9
2,104,133	+		LRK55_RS09635	0.39	+0.4
2,104,133	+		LRK55_RS09635	0.39	-0.5
2,104,133	+		LRK55_RS09635	0.39	+0.8
2,104,133	+		LRK55_RS09635	0.39	-0.6
2,104,133	+		LRK55_RS09635	0.39	+0.2
2,104,134	-		LRK55_RS09635	0.39	-0.0
2,104,134	-		LRK55_RS09635	0.39	-0.6
2,104,134	-		LRK55_RS09635	0.39	+1.3
2,104,134	-		LRK55_RS09635	0.39	+0.6
2,104,134	-		LRK55_RS09635	0.39	-0.4
2,104,134	-		LRK55_RS09635	0.39	-0.2
2,104,134	-		LRK55_RS09635	0.39	-2.6
2,104,134	-		LRK55_RS09635	0.39	-0.1
2,104,775	+				+0.7
2,104,776	-				+1.0
2,104,776	-				+0.4
2,104,776	-				+0.5
2,104,921	+		LRK55_RS09640	0.12	+1.4
2,104,921	+		LRK55_RS09640	0.12	-0.3
2,104,921	+		LRK55_RS09640	0.12	+0.1
2,104,922	-		LRK55_RS09640	0.12	+0.4
2,104,922	-		LRK55_RS09640	0.12	+1.5
2,104,922	-		LRK55_RS09640	0.12	-0.4
2,104,922	-		LRK55_RS09640	0.12	-2.9
2,105,009	-		LRK55_RS09640	0.26	+1.2
2,105,323	+		LRK55_RS09640	0.74	-0.2
2,105,323	+		LRK55_RS09640	0.74	-0.3
2,105,323	+		LRK55_RS09640	0.74	+0.2
2,105,323	+		LRK55_RS09640	0.74	-0.4
2,105,323	+		LRK55_RS09640	0.74	+0.3
2,105,350	+		LRK55_RS09640	0.78	+0.5
2,105,350	+		LRK55_RS09640	0.78	+0.8
2,105,350	+		LRK55_RS09640	0.78	+0.9
2,105,351	-		LRK55_RS09640	0.78	-3.2
2,105,351	-		LRK55_RS09640	0.78	+0.2
2,105,351	-		LRK55_RS09640	0.78	-2.4
2,105,419	+		LRK55_RS09640	0.89	-0.6
2,105,420	-		LRK55_RS09640	0.89	+1.2
2,105,437	-				-0.0
2,105,677	-		LRK55_RS09645	0.26	+1.4
2,105,677	-		LRK55_RS09645	0.26	+1.0
2,105,677	-		LRK55_RS09645	0.26	+0.4