Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07445

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,627,849	-		LRK55_RS07440	0.46	+0.4
1,627,934	+		LRK55_RS07440	0.53	-0.6
1,627,934	+		LRK55_RS07440	0.53	+0.3
1,627,935	-		LRK55_RS07440	0.53	-0.9
1,627,935	-		LRK55_RS07440	0.53	-0.5
1,627,935	-		LRK55_RS07440	0.53	+0.5
1,628,019	+		LRK55_RS07440	0.59	-1.6
1,628,019	+		LRK55_RS07440	0.59	-1.2
1,628,020	-		LRK55_RS07440	0.59	-0.3
1,628,061	+		LRK55_RS07440	0.62	+0.1
1,628,061	+		LRK55_RS07440	0.62	+0.3
1,628,061	+		LRK55_RS07440	0.62	+0.1
1,628,061	+		LRK55_RS07440	0.62	-0.4
1,628,140	-		LRK55_RS07440	0.69	+0.2
1,628,235	+		LRK55_RS07440	0.76	+0.2
1,628,250	+		LRK55_RS07440	0.77	-0.2
1,628,251	-		LRK55_RS07440	0.77	+0.4
1,628,251	-		LRK55_RS07440	0.77	+0.4
1,628,251	-		LRK55_RS07440	0.77	-1.6
1,628,251	-		LRK55_RS07440	0.77	+0.8
1,628,472	+				-1.3
1,628,473	-				+0.4
1,628,478	+				+0.4
1,628,478	+				+0.3
1,628,478	+				-0.0
1,628,478	+				-0.0
1,628,478	+				+0.3
1,628,478	+				+0.2
1,628,478	+				-0.7
1,628,478	+				-0.1
1,628,478	+				+0.4
1,628,478	+				+0.6
1,628,478	+				-0.2
1,628,478	+				-0.7
1,628,478	+				+0.4
1,628,478	+				+0.7
1,628,479	-				-0.1
1,628,479	-				+0.1
1,628,479	-				+0.2
1,628,479	-				+0.4
1,628,479	-				-0.6
1,628,479	-				-0.2
1,628,479	-				-0.2
1,628,479	-				+0.3
1,628,487	+				-0.4
1,628,487	+				+0.2
1,628,487	+				-2.4
1,628,488	-				-1.1
1,628,488	-				-0.2
1,628,490	+				+0.5
1,628,490	+				-0.1
1,628,491	-				+0.5
1,628,491	-				+0.5
1,628,547	+				-0.9
1,628,548	-				-0.3
1,628,548	-				-0.6
1,628,552	+				+0.3
1,628,552	+				-0.5
1,628,552	+				+0.8
1,628,553	-				+0.2
1,628,629	-				+0.9
1,628,629	-				-2.0
1,628,828	+		LRK55_RS07445	0.17	-1.0
1,628,846	+		LRK55_RS07445	0.19	+0.0
1,628,867	+		LRK55_RS07445	0.21	+0.2
1,628,867	+		LRK55_RS07445	0.21	+0.8
1,628,867	+		LRK55_RS07445	0.21	-0.3
1,628,867	+		LRK55_RS07445	0.21	-0.1
1,628,868	-		LRK55_RS07445	0.21	+0.5
1,628,868	-		LRK55_RS07445	0.21	+0.4
1,628,868	-		LRK55_RS07445	0.21	+0.7
1,628,868	-		LRK55_RS07445	0.21	+0.7
1,628,868	-		LRK55_RS07445	0.21	-1.2
1,628,868	-		LRK55_RS07445	0.21	-0.2
1,628,868	-		LRK55_RS07445	0.21	-0.3
1,629,131	+		LRK55_RS07445	0.45	-0.3
1,629,132	-		LRK55_RS07445	0.45	+0.3
1,629,155	+		LRK55_RS07445	0.47	-0.5
1,629,156	-		LRK55_RS07445	0.48	-1.9
1,629,156	-		LRK55_RS07445	0.48	-0.7
1,629,254	+		LRK55_RS07445	0.57	+0.5
1,629,254	+		LRK55_RS07445	0.57	-1.4
1,629,276	-		LRK55_RS07445	0.59	-0.3
1,629,317	+		LRK55_RS07445	0.63	+2.0
1,629,317	+		LRK55_RS07445	0.63	-1.6
1,629,317	+		LRK55_RS07445	0.63	-1.2
1,629,317	+		LRK55_RS07445	0.63	+0.3
1,629,317	+		LRK55_RS07445	0.63	+0.1
1,629,317	+		LRK55_RS07445	0.63	-0.2
1,629,318	-		LRK55_RS07445	0.63	-0.5
1,629,318	-		LRK55_RS07445	0.63	-1.2
1,629,318	-		LRK55_RS07445	0.63	+1.6
1,629,318	-		LRK55_RS07445	0.63	+0.5
1,629,455	+		LRK55_RS07445	0.75	-0.7
1,629,456	-		LRK55_RS07445	0.76	-1.7
1,629,456	-		LRK55_RS07445	0.76	+0.1
1,629,787	+				-0.2
1,629,788	-				-0.2
1,629,788	-				+0.2
1,629,788	-				+0.6
1,629,788	-				-0.2
1,629,788	-				+1.0
1,629,809	-				+0.5
1,629,817	+				+0.8
1,629,817	+				-0.5
1,629,817	+				+0.3
1,629,817	+				-2.8
1,629,817	+				-0.1
1,629,817	+				+0.5
1,629,817	+				+0.0
1,629,817	+				+0.0
1,629,818	-				+0.7
1,629,818	-				+1.6
1,629,818	-				+0.0
1,629,818	-				+0.1
1,629,818	-				+1.0
1,629,818	-				+0.0
1,629,818	-				+1.0
1,629,818	-				-0.0
1,629,818	-				+0.4
1,629,883	+		LRK55_RS07450	0.11	-0.5
1,629,883	+		LRK55_RS07450	0.11	-0.1
1,629,883	+		LRK55_RS07450	0.11	+0.4
1,629,901	+		LRK55_RS07450	0.12	-0.3
1,629,901	+		LRK55_RS07450	0.12	-0.4
1,629,901	+		LRK55_RS07450	0.12	-1.8
1,629,901	+		LRK55_RS07450	0.12	+1.8
1,629,902	-		LRK55_RS07450	0.12	-0.9
1,629,902	-		LRK55_RS07450	0.12	-0.6
1,629,902	-		LRK55_RS07450	0.12	-0.5
1,629,902	-		LRK55_RS07450	0.12	+0.1
1,629,919	+		LRK55_RS07450	0.13	+0.6
1,629,920	-		LRK55_RS07450	0.13	+0.5
1,629,920	-		LRK55_RS07450	0.13	-0.8
1,630,096	+		LRK55_RS07450	0.24	-0.8
1,630,096	+		LRK55_RS07450	0.24	+1.2
1,630,096	+		LRK55_RS07450	0.24	+0.0
1,630,097	-		LRK55_RS07450	0.24	-0.3
1,630,097	-		LRK55_RS07450	0.24	+0.4
1,630,097	-		LRK55_RS07450	0.24	+0.9
1,630,097	-		LRK55_RS07450	0.24	+0.2
1,630,117	+		LRK55_RS07450	0.25	-0.4
1,630,117	+		LRK55_RS07450	0.25	-0.0
1,630,117	+		LRK55_RS07450	0.25	-0.1
1,630,117	+		LRK55_RS07450	0.25	-0.0
1,630,117	+		LRK55_RS07450	0.25	+0.7
1,630,117	+		LRK55_RS07450	0.25	-0.1
1,630,151	-		LRK55_RS07450	0.27	+0.7
1,630,288	+		LRK55_RS07450	0.36	-0.9
1,630,289	-		LRK55_RS07450	0.36	-0.2
1,630,309	+		LRK55_RS07450	0.37	+0.0
1,630,309	+		LRK55_RS07450	0.37	-0.6
1,630,310	-		LRK55_RS07450	0.37	-0.8
1,630,310	-		LRK55_RS07450	0.37	+1.0
1,630,384	+		LRK55_RS07450	0.42	+0.4
1,630,399	+		LRK55_RS07450	0.43	-0.7
1,630,400	-		LRK55_RS07450	0.43	-0.5
1,630,400	-		LRK55_RS07450	0.43	-0.6
1,630,462	+		LRK55_RS07450	0.47	-1.8
1,630,462	+		LRK55_RS07450	0.47	+1.1
1,630,462	+		LRK55_RS07450	0.47	+0.1
1,630,462	+		LRK55_RS07450	0.47	+0.4
1,630,463	-		LRK55_RS07450	0.47	+1.1
1,630,463	-		LRK55_RS07450	0.47	-0.5
1,630,463	-		LRK55_RS07450	0.47	+0.4
1,630,463	-		LRK55_RS07450	0.47	-0.2
1,630,463	-		LRK55_RS07450	0.47	+0.7
1,630,463	-		LRK55_RS07450	0.47	+0.5
1,630,501	+		LRK55_RS07450	0.49	-1.9
1,630,502	-		LRK55_RS07450	0.49	+0.3
1,630,648	+		LRK55_RS07450	0.58	+0.9
1,630,648	+		LRK55_RS07450	0.58	+0.7
1,630,648	+		LRK55_RS07450	0.58	+1.4
1,630,649	-		LRK55_RS07450	0.59	-0.3
1,630,649	-		LRK55_RS07450	0.59	-1.0
1,630,649	-		LRK55_RS07450	0.59	-0.5
1,630,649	-		LRK55_RS07450	0.59	+0.1
1,630,649	-		LRK55_RS07450	0.59	-0.3
1,630,666	+		LRK55_RS07450	0.60	-0.8
1,630,666	+		LRK55_RS07450	0.60	-0.3
1,630,666	+		LRK55_RS07450	0.60	-0.5
1,630,666	+		LRK55_RS07450	0.60	+0.8
1,630,667	-		LRK55_RS07450	0.60	+0.5
1,630,667	-		LRK55_RS07450	0.60	-0.3
1,630,690	+		LRK55_RS07450	0.61	+0.5
1,630,690	+		LRK55_RS07450	0.61	+0.2
1,630,691	-		LRK55_RS07450	0.61	-0.2
1,630,691	-		LRK55_RS07450	0.61	+0.2
1,630,691	-		LRK55_RS07450	0.61	-0.8