Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05975

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05965 and LRK55_RS05970 overlap by 6 nucleotidesLRK55_RS05970 and LRK55_RS05975 are separated by 232 nucleotidesLRK55_RS05975 and LRK55_RS05980 are separated by 215 nucleotidesLRK55_RS05980 and LRK55_RS05985 are separated by 40 nucleotides LRK55_RS05965: LRK55_RS05965 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 1,284,815 to 1,285,378 _RS05965 LRK55_RS05970: LRK55_RS05970 - hypothetical protein, at 1,285,373 to 1,285,618 _RS05970 LRK55_RS05975: LRK55_RS05975 - L,D-transpeptidase family protein, at 1,285,851 to 1,287,494 _RS05975 LRK55_RS05980: LRK55_RS05980 - murein L,D-transpeptidase catalytic domain family protein, at 1,287,710 to 1,288,378 _RS05980 LRK55_RS05985: LRK55_RS05985 - hypothetical protein, at 1,288,419 to 1,288,799 _RS05985 Position (kb) 1285 1286 1287 1288Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1285.238 kb on + strand, within LRK55_RS05965at 1285.238 kb on + strand, within LRK55_RS05965at 1285.238 kb on + strand, within LRK55_RS05965at 1285.238 kb on + strand, within LRK55_RS05965at 1285.238 kb on + strand, within LRK55_RS05965at 1285.239 kb on - strand, within LRK55_RS05965at 1285.239 kb on - strand, within LRK55_RS05965at 1285.239 kb on - strand, within LRK55_RS05965at 1285.239 kb on - strand, within LRK55_RS05965at 1285.449 kb on + strand, within LRK55_RS05970at 1285.622 kb on + strandat 1285.622 kb on + strandat 1285.623 kb on - strandat 1285.727 kb on + strandat 1285.727 kb on + strandat 1285.727 kb on + strandat 1285.728 kb on - strandat 1285.728 kb on - strandat 1285.728 kb on - strandat 1285.948 kb on + strandat 1285.948 kb on + strandat 1285.949 kb on - strandat 1285.949 kb on - strandat 1286.002 kb on + strandat 1286.002 kb on + strandat 1286.003 kb on - strandat 1286.003 kb on - strandat 1286.039 kb on - strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.161 kb on + strand, within LRK55_RS05975at 1286.162 kb on - strand, within LRK55_RS05975at 1286.162 kb on - strand, within LRK55_RS05975at 1286.162 kb on - strand, within LRK55_RS05975at 1286.162 kb on - strand, within LRK55_RS05975at 1286.212 kb on + strand, within LRK55_RS05975at 1286.212 kb on + strand, within LRK55_RS05975at 1286.212 kb on + strand, within LRK55_RS05975at 1286.212 kb on + strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.213 kb on - strand, within LRK55_RS05975at 1286.378 kb on - strand, within LRK55_RS05975at 1286.461 kb on + strand, within LRK55_RS05975at 1286.461 kb on + strand, within LRK55_RS05975at 1286.461 kb on + strand, within LRK55_RS05975at 1286.461 kb on + strand, within LRK55_RS05975at 1286.462 kb on - strand, within LRK55_RS05975at 1286.462 kb on - strand, within LRK55_RS05975at 1286.462 kb on - strand, within LRK55_RS05975at 1286.462 kb on - strand, within LRK55_RS05975at 1286.548 kb on + strand, within LRK55_RS05975at 1286.548 kb on + strand, within LRK55_RS05975at 1286.549 kb on - strand, within LRK55_RS05975at 1286.549 kb on - strand, within LRK55_RS05975at 1286.549 kb on - strand, within LRK55_RS05975at 1286.549 kb on - strand, within LRK55_RS05975at 1286.551 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.719 kb on + strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.720 kb on - strand, within LRK55_RS05975at 1286.945 kb on - strand, within LRK55_RS05975at 1286.945 kb on - strand, within LRK55_RS05975at 1286.945 kb on - strand, within LRK55_RS05975at 1286.945 kb on - strand, within LRK55_RS05975at 1286.945 kb on - strand, within LRK55_RS05975at 1286.947 kb on + strand, within LRK55_RS05975at 1286.947 kb on + strand, within LRK55_RS05975at 1286.947 kb on + strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1286.948 kb on - strand, within LRK55_RS05975at 1287.100 kb on + strand, within LRK55_RS05975at 1287.101 kb on - strand, within LRK55_RS05975at 1287.223 kb on + strand, within LRK55_RS05975at 1287.223 kb on + strand, within LRK55_RS05975at 1287.224 kb on - strand, within LRK55_RS05975at 1287.328 kb on + strand, within LRK55_RS05975at 1287.329 kb on - strand, within LRK55_RS05975at 1287.329 kb on - strand, within LRK55_RS05975at 1287.329 kb on - strand, within LRK55_RS05975at 1287.329 kb on - strand, within LRK55_RS05975at 1287.329 kb on - strand, within LRK55_RS05975at 1287.569 kb on - strandat 1287.569 kb on - strandat 1287.569 kb on - strandat 1287.629 kb on + strandat 1287.630 kb on - strandat 1287.887 kb on + strand, within LRK55_RS05980at 1287.950 kb on + strand, within LRK55_RS05980at 1287.950 kb on + strand, within LRK55_RS05980at 1287.950 kb on + strand, within LRK55_RS05980at 1287.951 kb on - strand, within LRK55_RS05980at 1288.064 kb on + strand, within LRK55_RS05980at 1288.064 kb on + strand, within LRK55_RS05980at 1288.065 kb on - strand, within LRK55_RS05980at 1288.065 kb on - strand, within LRK55_RS05980at 1288.065 kb on - strand, within LRK55_RS05980at 1288.065 kb on - strand, within LRK55_RS05980at 1288.082 kb on + strand, within LRK55_RS05980at 1288.082 kb on + strand, within LRK55_RS05980at 1288.083 kb on - strand, within LRK55_RS05980at 1288.163 kb on + strand, within LRK55_RS05980at 1288.163 kb on + strand, within LRK55_RS05980at 1288.163 kb on + strand, within LRK55_RS05980at 1288.163 kb on + strand, within LRK55_RS05980at 1288.163 kb on + strand, within LRK55_RS05980at 1288.211 kb on + strand, within LRK55_RS05980at 1288.212 kb on - strand, within LRK55_RS05980at 1288.212 kb on - strand, within LRK55_RS05980at 1288.277 kb on + strand, within LRK55_RS05980at 1288.277 kb on + strand, within LRK55_RS05980at 1288.277 kb on + strand, within LRK55_RS05980at 1288.277 kb on + strand, within LRK55_RS05980at 1288.278 kb on - strand, within LRK55_RS05980at 1288.278 kb on - strand, within LRK55_RS05980at 1288.289 kb on + strand, within LRK55_RS05980at 1288.289 kb on + strand, within LRK55_RS05980at 1288.289 kb on + strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.290 kb on - strand, within LRK55_RS05980at 1288.293 kb on - strand, within LRK55_RS05980at 1288.293 kb on - strand, within LRK55_RS05980at 1288.293 kb on - strand, within LRK55_RS05980at 1288.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,285,238 + LRK55_RS05965 0.75 +0.2
1,285,238 + LRK55_RS05965 0.75 -0.4
1,285,238 + LRK55_RS05965 0.75 -0.9
1,285,238 + LRK55_RS05965 0.75 +1.6
1,285,238 + LRK55_RS05965 0.75 -2.0
1,285,239 - LRK55_RS05965 0.75 -0.1
1,285,239 - LRK55_RS05965 0.75 -1.1
1,285,239 - LRK55_RS05965 0.75 +0.7
1,285,239 - LRK55_RS05965 0.75 +0.1
1,285,449 + LRK55_RS05970 0.31 -0.7
1,285,622 + +0.0
1,285,622 + +0.5
1,285,623 - -0.4
1,285,727 + +0.7
1,285,727 + +0.5
1,285,727 + -0.5
1,285,728 - +0.6
1,285,728 - -0.8
1,285,728 - -0.4
1,285,948 + +0.3
1,285,948 + +0.0
1,285,949 - -1.5
1,285,949 - -0.1
1,286,002 + +0.3
1,286,002 + +0.1
1,286,003 - +0.3
1,286,003 - -2.1
1,286,039 - LRK55_RS05975 0.11 +0.8
1,286,161 + LRK55_RS05975 0.19 +0.1
1,286,161 + LRK55_RS05975 0.19 -0.6
1,286,161 + LRK55_RS05975 0.19 -0.5
1,286,161 + LRK55_RS05975 0.19 -0.1
1,286,161 + LRK55_RS05975 0.19 -0.9
1,286,161 + LRK55_RS05975 0.19 +2.9
1,286,162 - LRK55_RS05975 0.19 +0.5
1,286,162 - LRK55_RS05975 0.19 +0.5
1,286,162 - LRK55_RS05975 0.19 +0.1
1,286,162 - LRK55_RS05975 0.19 +1.6
1,286,212 + LRK55_RS05975 0.22 +0.6
1,286,212 + LRK55_RS05975 0.22 -0.6
1,286,212 + LRK55_RS05975 0.22 +0.2
1,286,212 + LRK55_RS05975 0.22 -0.7
1,286,213 - LRK55_RS05975 0.22 +0.3
1,286,213 - LRK55_RS05975 0.22 +0.4
1,286,213 - LRK55_RS05975 0.22 +0.0
1,286,213 - LRK55_RS05975 0.22 +1.0
1,286,213 - LRK55_RS05975 0.22 -0.9
1,286,213 - LRK55_RS05975 0.22 +0.3
1,286,213 - LRK55_RS05975 0.22 +0.4
1,286,213 - LRK55_RS05975 0.22 +1.1
1,286,213 - LRK55_RS05975 0.22 -1.5
1,286,378 - LRK55_RS05975 0.32 +0.6
1,286,461 + LRK55_RS05975 0.37 -1.0
1,286,461 + LRK55_RS05975 0.37 +0.3
1,286,461 + LRK55_RS05975 0.37 +0.7
1,286,461 + LRK55_RS05975 0.37 +0.2
1,286,462 - LRK55_RS05975 0.37 -0.2
1,286,462 - LRK55_RS05975 0.37 +0.6
1,286,462 - LRK55_RS05975 0.37 -0.3
1,286,462 - LRK55_RS05975 0.37 +0.3
1,286,548 + LRK55_RS05975 0.42 -0.5
1,286,548 + LRK55_RS05975 0.42 -0.2
1,286,549 - LRK55_RS05975 0.42 +0.4
1,286,549 - LRK55_RS05975 0.42 -0.2
1,286,549 - LRK55_RS05975 0.42 +1.0
1,286,549 - LRK55_RS05975 0.42 +0.7
1,286,551 + LRK55_RS05975 0.43 -0.5
1,286,719 + LRK55_RS05975 0.53 +0.6
1,286,719 + LRK55_RS05975 0.53 +0.3
1,286,719 + LRK55_RS05975 0.53 -0.3
1,286,719 + LRK55_RS05975 0.53 +0.4
1,286,719 + LRK55_RS05975 0.53 -0.9
1,286,719 + LRK55_RS05975 0.53 -0.5
1,286,720 - LRK55_RS05975 0.53 +0.7
1,286,720 - LRK55_RS05975 0.53 +0.2
1,286,720 - LRK55_RS05975 0.53 -0.1
1,286,720 - LRK55_RS05975 0.53 -0.8
1,286,720 - LRK55_RS05975 0.53 -0.1
1,286,720 - LRK55_RS05975 0.53 -1.7
1,286,945 - LRK55_RS05975 0.67 -0.2
1,286,945 - LRK55_RS05975 0.67 -2.3
1,286,945 - LRK55_RS05975 0.67 -0.8
1,286,945 - LRK55_RS05975 0.67 -1.9
1,286,945 - LRK55_RS05975 0.67 -0.1
1,286,947 + LRK55_RS05975 0.67 -0.4
1,286,947 + LRK55_RS05975 0.67 +2.5
1,286,947 + LRK55_RS05975 0.67 +0.6
1,286,948 - LRK55_RS05975 0.67 +0.1
1,286,948 - LRK55_RS05975 0.67 +0.7
1,286,948 - LRK55_RS05975 0.67 -0.7
1,286,948 - LRK55_RS05975 0.67 -0.1
1,286,948 - LRK55_RS05975 0.67 -0.2
1,286,948 - LRK55_RS05975 0.67 +0.2
1,287,100 + LRK55_RS05975 0.76 +0.5
1,287,101 - LRK55_RS05975 0.76 +0.0
1,287,223 + LRK55_RS05975 0.83 -1.4
1,287,223 + LRK55_RS05975 0.83 -1.2
1,287,224 - LRK55_RS05975 0.84 -0.6
1,287,328 + LRK55_RS05975 0.90 +0.7
1,287,329 - LRK55_RS05975 0.90 -0.9
1,287,329 - LRK55_RS05975 0.90 -1.1
1,287,329 - LRK55_RS05975 0.90 -1.1
1,287,329 - LRK55_RS05975 0.90 -0.8
1,287,329 - LRK55_RS05975 0.90 -0.7
1,287,569 - -0.7
1,287,569 - +0.2
1,287,569 - -0.4
1,287,629 + +0.7
1,287,630 - -0.2
1,287,887 + LRK55_RS05980 0.26 +0.3
1,287,950 + LRK55_RS05980 0.36 -0.2
1,287,950 + LRK55_RS05980 0.36 -0.1
1,287,950 + LRK55_RS05980 0.36 -0.6
1,287,951 - LRK55_RS05980 0.36 -0.8
1,288,064 + LRK55_RS05980 0.53 +0.7
1,288,064 + LRK55_RS05980 0.53 +0.4
1,288,065 - LRK55_RS05980 0.53 -1.0
1,288,065 - LRK55_RS05980 0.53 -0.7
1,288,065 - LRK55_RS05980 0.53 +0.9
1,288,065 - LRK55_RS05980 0.53 +0.3
1,288,082 + LRK55_RS05980 0.56 -0.7
1,288,082 + LRK55_RS05980 0.56 -0.4
1,288,083 - LRK55_RS05980 0.56 -1.5
1,288,163 + LRK55_RS05980 0.68 +0.8
1,288,163 + LRK55_RS05980 0.68 +1.1
1,288,163 + LRK55_RS05980 0.68 -0.1
1,288,163 + LRK55_RS05980 0.68 +0.4
1,288,163 + LRK55_RS05980 0.68 -0.1
1,288,211 + LRK55_RS05980 0.75 -1.3
1,288,212 - LRK55_RS05980 0.75 -0.5
1,288,212 - LRK55_RS05980 0.75 +1.0
1,288,277 + LRK55_RS05980 0.85 +0.4
1,288,277 + LRK55_RS05980 0.85 +0.1
1,288,277 + LRK55_RS05980 0.85 +1.7
1,288,277 + LRK55_RS05980 0.85 +0.4
1,288,278 - LRK55_RS05980 0.85 -0.4
1,288,278 - LRK55_RS05980 0.85 +0.8
1,288,289 + LRK55_RS05980 0.87 +2.7
1,288,289 + LRK55_RS05980 0.87 -0.5
1,288,289 + LRK55_RS05980 0.87 +0.9
1,288,290 - LRK55_RS05980 0.87 +0.3
1,288,290 - LRK55_RS05980 0.87 +0.8
1,288,290 - LRK55_RS05980 0.87 +0.8
1,288,290 - LRK55_RS05980 0.87 +0.1
1,288,290 - LRK55_RS05980 0.87 -1.0
1,288,290 - LRK55_RS05980 0.87 -0.7
1,288,293 - LRK55_RS05980 0.87 -0.5
1,288,293 - LRK55_RS05980 0.87 +1.0
1,288,293 - LRK55_RS05980 0.87 +0.1
1,288,326 - -0.8

Or see this region's nucleotide sequence