Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05915

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05910 and LRK55_RS05915 are separated by 11 nucleotidesLRK55_RS05915 and LRK55_RS05920 are separated by 4 nucleotidesLRK55_RS05920 and LRK55_RS05925 are separated by 56 nucleotides LRK55_RS05910: LRK55_RS05910 - cardiolipin synthase, at 1,277,411 to 1,278,805 _RS05910 LRK55_RS05915: LRK55_RS05915 - prolyl oligopeptidase family serine peptidase, at 1,278,817 to 1,279,599 _RS05915 LRK55_RS05920: LRK55_RS05920 - hypothetical protein, at 1,279,604 to 1,280,038 _RS05920 LRK55_RS05925: LRK55_RS05925 - bifunctional nicotinamidase/pyrazinamidase, at 1,280,095 to 1,280,748 _RS05925 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -3 -2 -1 0 1at 1277.900 kb on + strand, within LRK55_RS05910at 1277.900 kb on + strand, within LRK55_RS05910at 1277.900 kb on + strand, within LRK55_RS05910at 1277.900 kb on + strand, within LRK55_RS05910at 1277.901 kb on - strand, within LRK55_RS05910at 1277.901 kb on - strand, within LRK55_RS05910at 1277.945 kb on + strand, within LRK55_RS05910at 1277.945 kb on + strand, within LRK55_RS05910at 1277.945 kb on + strand, within LRK55_RS05910at 1277.946 kb on - strand, within LRK55_RS05910at 1278.101 kb on + strand, within LRK55_RS05910at 1278.101 kb on + strand, within LRK55_RS05910at 1278.102 kb on - strand, within LRK55_RS05910at 1278.102 kb on - strand, within LRK55_RS05910at 1278.102 kb on - strand, within LRK55_RS05910at 1278.102 kb on - strand, within LRK55_RS05910at 1278.371 kb on + strand, within LRK55_RS05910at 1278.371 kb on + strand, within LRK55_RS05910at 1278.371 kb on + strand, within LRK55_RS05910at 1278.372 kb on - strand, within LRK55_RS05910at 1278.372 kb on - strand, within LRK55_RS05910at 1278.372 kb on - strand, within LRK55_RS05910at 1278.500 kb on + strand, within LRK55_RS05910at 1278.510 kb on + strand, within LRK55_RS05910at 1278.536 kb on + strand, within LRK55_RS05910at 1278.737 kb on + strandat 1278.738 kb on - strandat 1278.803 kb on + strandat 1278.803 kb on + strandat 1278.803 kb on + strandat 1278.926 kb on - strand, within LRK55_RS05915at 1278.926 kb on - strand, within LRK55_RS05915at 1279.204 kb on + strand, within LRK55_RS05915at 1279.205 kb on - strand, within LRK55_RS05915at 1279.205 kb on - strand, within LRK55_RS05915at 1279.205 kb on - strand, within LRK55_RS05915at 1279.366 kb on + strand, within LRK55_RS05915at 1279.367 kb on - strand, within LRK55_RS05915at 1279.498 kb on + strand, within LRK55_RS05915at 1279.500 kb on + strand, within LRK55_RS05915at 1279.501 kb on - strand, within LRK55_RS05915at 1279.662 kb on + strand, within LRK55_RS05920at 1279.662 kb on + strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.663 kb on - strand, within LRK55_RS05920at 1279.776 kb on + strand, within LRK55_RS05920at 1279.776 kb on + strand, within LRK55_RS05920at 1279.777 kb on - strand, within LRK55_RS05920at 1279.786 kb on - strand, within LRK55_RS05920at 1279.786 kb on - strand, within LRK55_RS05920at 1279.963 kb on - strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.983 kb on + strand, within LRK55_RS05920at 1279.984 kb on - strand, within LRK55_RS05920at 1279.984 kb on - strand, within LRK55_RS05920at 1279.984 kb on - strand, within LRK55_RS05920at 1280.029 kb on + strandat 1280.030 kb on - strandat 1280.062 kb on + strandat 1280.063 kb on - strandat 1280.333 kb on - strand, within LRK55_RS05925at 1280.333 kb on - strand, within LRK55_RS05925at 1280.464 kb on + strand, within LRK55_RS05925at 1280.464 kb on + strand, within LRK55_RS05925at 1280.464 kb on + strand, within LRK55_RS05925at 1280.465 kb on - strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.582 kb on + strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925at 1280.583 kb on - strand, within LRK55_RS05925

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,277,900 + LRK55_RS05910 0.35 -0.7
1,277,900 + LRK55_RS05910 0.35 -0.5
1,277,900 + LRK55_RS05910 0.35 -1.7
1,277,900 + LRK55_RS05910 0.35 +0.4
1,277,901 - LRK55_RS05910 0.35 +1.3
1,277,901 - LRK55_RS05910 0.35 +1.1
1,277,945 + LRK55_RS05910 0.38 -1.4
1,277,945 + LRK55_RS05910 0.38 +0.4
1,277,945 + LRK55_RS05910 0.38 +0.3
1,277,946 - LRK55_RS05910 0.38 -0.0
1,278,101 + LRK55_RS05910 0.49 +0.8
1,278,101 + LRK55_RS05910 0.49 +1.6
1,278,102 - LRK55_RS05910 0.50 +0.3
1,278,102 - LRK55_RS05910 0.50 +0.4
1,278,102 - LRK55_RS05910 0.50 -1.1
1,278,102 - LRK55_RS05910 0.50 -1.2
1,278,371 + LRK55_RS05910 0.69 +0.6
1,278,371 + LRK55_RS05910 0.69 -0.6
1,278,371 + LRK55_RS05910 0.69 +0.9
1,278,372 - LRK55_RS05910 0.69 -0.3
1,278,372 - LRK55_RS05910 0.69 -1.0
1,278,372 - LRK55_RS05910 0.69 -0.1
1,278,500 + LRK55_RS05910 0.78 +0.5
1,278,510 + LRK55_RS05910 0.79 -0.2
1,278,536 + LRK55_RS05910 0.81 -0.1
1,278,737 + -1.9
1,278,738 - +0.7
1,278,803 + -1.2
1,278,803 + +0.8
1,278,803 + +0.5
1,278,926 - LRK55_RS05915 0.14 +0.2
1,278,926 - LRK55_RS05915 0.14 -0.0
1,279,204 + LRK55_RS05915 0.49 +0.1
1,279,205 - LRK55_RS05915 0.50 +0.4
1,279,205 - LRK55_RS05915 0.50 -0.7
1,279,205 - LRK55_RS05915 0.50 +0.7
1,279,366 + LRK55_RS05915 0.70 -0.3
1,279,367 - LRK55_RS05915 0.70 +0.4
1,279,498 + LRK55_RS05915 0.87 +0.3
1,279,500 + LRK55_RS05915 0.87 -0.5
1,279,501 - LRK55_RS05915 0.87 -0.4
1,279,662 + LRK55_RS05920 0.13 -0.3
1,279,662 + LRK55_RS05920 0.13 +0.8
1,279,663 - LRK55_RS05920 0.14 +1.7
1,279,663 - LRK55_RS05920 0.14 +0.2
1,279,663 - LRK55_RS05920 0.14 -1.5
1,279,663 - LRK55_RS05920 0.14 -1.2
1,279,663 - LRK55_RS05920 0.14 -3.1
1,279,663 - LRK55_RS05920 0.14 +0.4
1,279,663 - LRK55_RS05920 0.14 -0.5
1,279,663 - LRK55_RS05920 0.14 -1.2
1,279,663 - LRK55_RS05920 0.14 -1.3
1,279,663 - LRK55_RS05920 0.14 -0.3
1,279,776 + LRK55_RS05920 0.40 -0.7
1,279,776 + LRK55_RS05920 0.40 -0.9
1,279,777 - LRK55_RS05920 0.40 -0.7
1,279,786 - LRK55_RS05920 0.42 +0.9
1,279,786 - LRK55_RS05920 0.42 +0.4
1,279,963 - LRK55_RS05920 0.83 +0.9
1,279,983 + LRK55_RS05920 0.87 +1.1
1,279,983 + LRK55_RS05920 0.87 -1.1
1,279,983 + LRK55_RS05920 0.87 -0.3
1,279,983 + LRK55_RS05920 0.87 -0.5
1,279,983 + LRK55_RS05920 0.87 +0.4
1,279,983 + LRK55_RS05920 0.87 +1.5
1,279,984 - LRK55_RS05920 0.87 -0.1
1,279,984 - LRK55_RS05920 0.87 +0.6
1,279,984 - LRK55_RS05920 0.87 -0.3
1,280,029 + -0.5
1,280,030 - -0.1
1,280,062 + -0.3
1,280,063 - +0.9
1,280,333 - LRK55_RS05925 0.36 -0.2
1,280,333 - LRK55_RS05925 0.36 -2.1
1,280,464 + LRK55_RS05925 0.56 -2.6
1,280,464 + LRK55_RS05925 0.56 -0.5
1,280,464 + LRK55_RS05925 0.56 +0.2
1,280,465 - LRK55_RS05925 0.57 -0.3
1,280,582 + LRK55_RS05925 0.74 -0.5
1,280,582 + LRK55_RS05925 0.74 -0.2
1,280,582 + LRK55_RS05925 0.74 +0.3
1,280,582 + LRK55_RS05925 0.74 -0.0
1,280,582 + LRK55_RS05925 0.74 -0.0
1,280,582 + LRK55_RS05925 0.74 +1.1
1,280,582 + LRK55_RS05925 0.74 +0.9
1,280,583 - LRK55_RS05925 0.75 -0.3
1,280,583 - LRK55_RS05925 0.75 -0.4
1,280,583 - LRK55_RS05925 0.75 +0.2
1,280,583 - LRK55_RS05925 0.75 +0.2
1,280,583 - LRK55_RS05925 0.75 -0.2
1,280,583 - LRK55_RS05925 0.75 +0.5
1,280,583 - LRK55_RS05925 0.75 +0.6
1,280,583 - LRK55_RS05925 0.75 +0.2
1,280,583 - LRK55_RS05925 0.75 -1.1

Or see this region's nucleotide sequence