Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS03955 and LRK55_RS03960 overlap by 4 nucleotides LRK55_RS03960 and LRK55_RS03965 are separated by 22 nucleotides LRK55_RS03965 and LRK55_RS03970 are separated by 362 nucleotides
LRK55_RS03955: LRK55_RS03955 - chemotaxis protein CheW, at 842,137 to 842,676
_RS03955
LRK55_RS03960: LRK55_RS03960 - response regulator, at 842,673 to 843,044
_RS03960
LRK55_RS03965: LRK55_RS03965 - response regulator, at 843,067 to 843,477
_RS03965
LRK55_RS03970: LRK55_RS03970 - glutathione synthase, at 843,840 to 844,817
_RS03970
Position (kb) 843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.630 kb on + strand at 842.666 kb on + strand at 842.666 kb on + strand at 842.666 kb on + strand at 842.666 kb on + strand at 842.667 kb on - strand at 842.667 kb on - strand at 842.667 kb on - strand at 842.667 kb on - strand at 842.695 kb on + strand at 842.850 kb on - strand, within LRK55_RS03960 at 842.850 kb on - strand, within LRK55_RS03960 at 843.143 kb on + strand, within LRK55_RS03965 at 843.143 kb on + strand, within LRK55_RS03965 at 843.143 kb on + strand, within LRK55_RS03965 at 843.144 kb on + strand, within LRK55_RS03965 at 843.144 kb on - strand, within LRK55_RS03965 at 843.144 kb on - strand, within LRK55_RS03965 at 843.144 kb on - strand, within LRK55_RS03965 at 843.144 kb on - strand, within LRK55_RS03965 at 843.511 kb on - strand at 843.511 kb on - strand at 843.511 kb on - strand at 843.511 kb on - strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.545 kb on + strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.546 kb on - strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.588 kb on + strand at 843.589 kb on - strand at 843.589 kb on - strand at 843.589 kb on - strand at 843.618 kb on + strand at 843.619 kb on - strand at 843.619 kb on - strand at 843.619 kb on - strand at 843.648 kb on + strand at 843.687 kb on + strand at 843.687 kb on + strand at 843.687 kb on + strand at 843.688 kb on - strand at 843.688 kb on - strand at 843.767 kb on + strand at 843.767 kb on + strand at 843.767 kb on + strand at 843.767 kb on + strand at 843.768 kb on - strand at 843.768 kb on - strand at 843.768 kb on - strand at 843.768 kb on - strand at 843.768 kb on - strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.770 kb on + strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.771 kb on - strand at 843.772 kb on + strand at 843.773 kb on - strand at 843.773 kb on - strand at 843.773 kb on - strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.783 kb on + strand at 843.784 kb on - strand at 843.784 kb on - strand at 843.784 kb on - strand at 843.785 kb on + strand at 843.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 842,630 + -0.7 842,666 + -0.1 842,666 + +0.6 842,666 + +0.5 842,666 + +0.8 842,667 - +0.1 842,667 - +0.2 842,667 - -0.3 842,667 - -0.3 842,695 + -1.2 842,850 - LRK55_RS03960 0.48 -0.0 842,850 - LRK55_RS03960 0.48 -1.2 843,143 + LRK55_RS03965 0.18 -1.4 843,143 + LRK55_RS03965 0.18 -0.0 843,143 + LRK55_RS03965 0.18 +0.7 843,144 + LRK55_RS03965 0.19 -0.2 843,144 - LRK55_RS03965 0.19 +0.1 843,144 - LRK55_RS03965 0.19 +1.3 843,144 - LRK55_RS03965 0.19 +1.1 843,144 - LRK55_RS03965 0.19 +1.2 843,511 - +0.6 843,511 - -0.2 843,511 - -0.4 843,511 - -1.5 843,545 + +0.0 843,545 + -0.8 843,545 + +0.5 843,545 + +0.4 843,545 + +0.1 843,545 + -2.0 843,545 + -0.6 843,545 + -0.5 843,545 + -0.9 843,546 - -0.6 843,546 - +0.9 843,546 - +1.3 843,546 - +0.5 843,546 - -0.1 843,546 - +0.8 843,546 - +0.7 843,546 - +0.1 843,546 - +1.0 843,546 - +0.9 843,588 + +0.4 843,588 + -0.8 843,588 + +0.9 843,588 + +0.7 843,588 + +0.1 843,588 + +1.6 843,588 + +0.1 843,589 - -0.2 843,589 - -0.4 843,589 - -0.6 843,618 + +0.8 843,619 - +0.1 843,619 - +0.3 843,619 - -0.4 843,648 + +0.8 843,687 + -0.6 843,687 + -0.3 843,687 + +0.4 843,688 - +0.3 843,688 - -2.1 843,767 + -1.5 843,767 + +0.7 843,767 + -2.9 843,767 + +0.5 843,768 - +0.8 843,768 - +0.5 843,768 - +0.2 843,768 - -0.9 843,768 - +0.2 843,770 + -2.0 843,770 + +0.3 843,770 + +0.1 843,770 + +1.1 843,770 + +0.1 843,770 + +0.4 843,770 + -0.3 843,770 + +1.1 843,770 + +0.4 843,770 + -0.3 843,770 + -0.5 843,771 - -0.1 843,771 - -0.4 843,771 - -0.6 843,771 - -1.7 843,771 - -0.0 843,771 - -0.3 843,771 - +2.4 843,771 - +0.4 843,771 - +0.1 843,771 - -0.4 843,771 - +0.2 843,771 - -0.7 843,771 - +0.2 843,771 - +0.3 843,771 - +0.1 843,771 - -2.1 843,772 + +0.3 843,773 - +0.7 843,773 - +0.3 843,773 - +2.2 843,783 + -0.0 843,783 + -0.0 843,783 + -0.7 843,783 + +1.1 843,783 + +0.1 843,783 + +0.2 843,783 + +0.1 843,783 + -0.2 843,783 + +1.1 843,783 + -1.2 843,783 + -0.4 843,784 - -0.7 843,784 - -1.1 843,784 - +0.5 843,785 + +0.2 843,786 - -0.1
Or see this region's nucleotide sequence