Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02760

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02755 and LRK55_RS02760 are separated by 90 nucleotidesLRK55_RS02760 and LRK55_RS02765 overlap by 1 nucleotides LRK55_RS02755: LRK55_RS02755 - GNAT family N-acetyltransferase, at 594,745 to 595,815 _RS02755 LRK55_RS02760: LRK55_RS02760 - phosphopantetheine-binding protein, at 595,906 to 596,178 _RS02760 LRK55_RS02765: LRK55_RS02765 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 596,178 to 597,407 _RS02765 Position (kb) 595 596 597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.920 kb on + strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.921 kb on - strand, within LRK55_RS02755at 594.947 kb on + strand, within LRK55_RS02755at 594.977 kb on + strand, within LRK55_RS02755at 594.977 kb on + strand, within LRK55_RS02755at 594.977 kb on + strand, within LRK55_RS02755at 594.978 kb on - strand, within LRK55_RS02755at 594.978 kb on - strand, within LRK55_RS02755at 594.978 kb on - strand, within LRK55_RS02755at 594.978 kb on - strand, within LRK55_RS02755at 594.978 kb on - strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.019 kb on + strand, within LRK55_RS02755at 595.020 kb on + strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.020 kb on - strand, within LRK55_RS02755at 595.049 kb on + strand, within LRK55_RS02755at 595.050 kb on - strand, within LRK55_RS02755at 595.050 kb on - strand, within LRK55_RS02755at 595.089 kb on - strand, within LRK55_RS02755at 595.089 kb on - strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.181 kb on + strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.182 kb on - strand, within LRK55_RS02755at 595.334 kb on + strand, within LRK55_RS02755at 595.334 kb on + strand, within LRK55_RS02755at 595.334 kb on + strand, within LRK55_RS02755at 595.335 kb on - strand, within LRK55_RS02755at 595.637 kb on + strand, within LRK55_RS02755at 595.638 kb on - strand, within LRK55_RS02755at 595.638 kb on - strand, within LRK55_RS02755at 595.819 kb on + strandat 595.819 kb on + strandat 595.819 kb on + strandat 595.820 kb on - strandat 595.820 kb on - strandat 595.820 kb on - strandat 595.820 kb on - strandat 595.820 kb on - strandat 595.833 kb on + strandat 595.833 kb on + strandat 595.834 kb on - strandat 596.556 kb on + strand, within LRK55_RS02765at 596.556 kb on + strand, within LRK55_RS02765at 596.556 kb on + strand, within LRK55_RS02765at 596.557 kb on - strand, within LRK55_RS02765at 596.557 kb on - strand, within LRK55_RS02765at 596.557 kb on - strand, within LRK55_RS02765at 596.557 kb on - strand, within LRK55_RS02765at 596.557 kb on - strand, within LRK55_RS02765at 596.641 kb on - strand, within LRK55_RS02765at 596.661 kb on + strand, within LRK55_RS02765at 596.661 kb on + strand, within LRK55_RS02765at 596.662 kb on - strand, within LRK55_RS02765at 596.662 kb on - strand, within LRK55_RS02765at 596.662 kb on - strand, within LRK55_RS02765at 596.662 kb on - strand, within LRK55_RS02765at 596.662 kb on - strand, within LRK55_RS02765at 596.778 kb on + strand, within LRK55_RS02765at 596.778 kb on + strand, within LRK55_RS02765at 596.778 kb on + strand, within LRK55_RS02765at 596.778 kb on + strand, within LRK55_RS02765at 596.779 kb on - strand, within LRK55_RS02765at 596.779 kb on - strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.063 kb on + strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.064 kb on - strand, within LRK55_RS02765at 597.141 kb on + strand, within LRK55_RS02765

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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594,920 + LRK55_RS02755 0.16 -0.5
594,920 + LRK55_RS02755 0.16 -0.2
594,920 + LRK55_RS02755 0.16 +0.7
594,920 + LRK55_RS02755 0.16 -0.6
594,920 + LRK55_RS02755 0.16 -0.5
594,920 + LRK55_RS02755 0.16 +1.8
594,920 + LRK55_RS02755 0.16 -0.4
594,921 - LRK55_RS02755 0.16 -2.1
594,921 - LRK55_RS02755 0.16 -0.7
594,921 - LRK55_RS02755 0.16 -0.4
594,921 - LRK55_RS02755 0.16 -0.1
594,921 - LRK55_RS02755 0.16 -4.0
594,921 - LRK55_RS02755 0.16 -3.3
594,921 - LRK55_RS02755 0.16 -0.0
594,921 - LRK55_RS02755 0.16 +0.6
594,921 - LRK55_RS02755 0.16 -0.5
594,921 - LRK55_RS02755 0.16 -1.0
594,921 - LRK55_RS02755 0.16 -2.8
594,921 - LRK55_RS02755 0.16 -1.4
594,921 - LRK55_RS02755 0.16 +0.8
594,921 - LRK55_RS02755 0.16 -1.3
594,921 - LRK55_RS02755 0.16 -0.3
594,947 + LRK55_RS02755 0.19 -2.0
594,977 + LRK55_RS02755 0.22 -1.6
594,977 + LRK55_RS02755 0.22 -0.3
594,977 + LRK55_RS02755 0.22 -1.0
594,978 - LRK55_RS02755 0.22 -0.6
594,978 - LRK55_RS02755 0.22 -1.3
594,978 - LRK55_RS02755 0.22 -1.3
594,978 - LRK55_RS02755 0.22 -0.5
594,978 - LRK55_RS02755 0.22 -1.1
595,019 + LRK55_RS02755 0.26 -0.4
595,019 + LRK55_RS02755 0.26 -0.3
595,019 + LRK55_RS02755 0.26 +0.5
595,019 + LRK55_RS02755 0.26 +0.3
595,019 + LRK55_RS02755 0.26 -0.1
595,019 + LRK55_RS02755 0.26 -0.2
595,019 + LRK55_RS02755 0.26 -1.3
595,019 + LRK55_RS02755 0.26 +0.2
595,020 + LRK55_RS02755 0.26 -0.0
595,020 - LRK55_RS02755 0.26 -3.0
595,020 - LRK55_RS02755 0.26 -1.8
595,020 - LRK55_RS02755 0.26 +1.0
595,020 - LRK55_RS02755 0.26 -1.0
595,020 - LRK55_RS02755 0.26 -0.8
595,020 - LRK55_RS02755 0.26 -0.4
595,020 - LRK55_RS02755 0.26 +0.1
595,020 - LRK55_RS02755 0.26 -0.9
595,020 - LRK55_RS02755 0.26 -0.4
595,020 - LRK55_RS02755 0.26 -0.0
595,049 + LRK55_RS02755 0.28 -1.9
595,050 - LRK55_RS02755 0.28 +0.3
595,050 - LRK55_RS02755 0.28 +1.3
595,089 - LRK55_RS02755 0.32 -0.6
595,089 - LRK55_RS02755 0.32 +1.1
595,181 + LRK55_RS02755 0.41 -0.3
595,181 + LRK55_RS02755 0.41 -3.1
595,181 + LRK55_RS02755 0.41 -0.3
595,181 + LRK55_RS02755 0.41 +0.2
595,181 + LRK55_RS02755 0.41 -0.9
595,181 + LRK55_RS02755 0.41 -0.3
595,181 + LRK55_RS02755 0.41 +0.6
595,181 + LRK55_RS02755 0.41 -1.8
595,181 + LRK55_RS02755 0.41 -1.3
595,182 - LRK55_RS02755 0.41 -1.1
595,182 - LRK55_RS02755 0.41 -0.6
595,182 - LRK55_RS02755 0.41 -0.7
595,182 - LRK55_RS02755 0.41 -1.3
595,182 - LRK55_RS02755 0.41 +0.5
595,182 - LRK55_RS02755 0.41 +1.5
595,182 - LRK55_RS02755 0.41 +0.3
595,182 - LRK55_RS02755 0.41 +0.1
595,182 - LRK55_RS02755 0.41 +0.1
595,334 + LRK55_RS02755 0.55 -0.4
595,334 + LRK55_RS02755 0.55 -1.4
595,334 + LRK55_RS02755 0.55 -0.1
595,335 - LRK55_RS02755 0.55 -0.3
595,637 + LRK55_RS02755 0.83 -1.9
595,638 - LRK55_RS02755 0.83 +0.4
595,638 - LRK55_RS02755 0.83 -0.2
595,819 + +0.6
595,819 + -0.1
595,819 + -1.9
595,820 - -0.3
595,820 - +1.1
595,820 - -0.8
595,820 - +0.2
595,820 - +0.8
595,833 + +0.4
595,833 + -0.4
595,834 - +0.3
596,556 + LRK55_RS02765 0.31 +0.3
596,556 + LRK55_RS02765 0.31 -0.5
596,556 + LRK55_RS02765 0.31 -0.6
596,557 - LRK55_RS02765 0.31 +0.8
596,557 - LRK55_RS02765 0.31 -2.1
596,557 - LRK55_RS02765 0.31 +0.1
596,557 - LRK55_RS02765 0.31 -1.6
596,557 - LRK55_RS02765 0.31 -0.7
596,641 - LRK55_RS02765 0.38 -0.6
596,661 + LRK55_RS02765 0.39 -0.4
596,661 + LRK55_RS02765 0.39 +1.1
596,662 - LRK55_RS02765 0.39 +0.1
596,662 - LRK55_RS02765 0.39 -1.5
596,662 - LRK55_RS02765 0.39 -0.5
596,662 - LRK55_RS02765 0.39 -0.7
596,662 - LRK55_RS02765 0.39 +0.5
596,778 + LRK55_RS02765 0.49 -0.2
596,778 + LRK55_RS02765 0.49 -1.7
596,778 + LRK55_RS02765 0.49 -0.8
596,778 + LRK55_RS02765 0.49 -0.9
596,779 - LRK55_RS02765 0.49 -0.7
596,779 - LRK55_RS02765 0.49 +0.4
597,063 + LRK55_RS02765 0.72 -1.3
597,063 + LRK55_RS02765 0.72 -0.2
597,063 + LRK55_RS02765 0.72 -0.5
597,063 + LRK55_RS02765 0.72 -0.5
597,063 + LRK55_RS02765 0.72 -1.3
597,063 + LRK55_RS02765 0.72 -1.1
597,063 + LRK55_RS02765 0.72 -1.7
597,063 + LRK55_RS02765 0.72 -0.6
597,063 + LRK55_RS02765 0.72 -1.1
597,063 + LRK55_RS02765 0.72 -2.4
597,063 + LRK55_RS02765 0.72 -0.9
597,064 - LRK55_RS02765 0.72 -0.5
597,064 - LRK55_RS02765 0.72 -0.5
597,064 - LRK55_RS02765 0.72 -1.1
597,064 - LRK55_RS02765 0.72 +0.7
597,064 - LRK55_RS02765 0.72 -1.3
597,064 - LRK55_RS02765 0.72 -0.4
597,064 - LRK55_RS02765 0.72 -0.9
597,064 - LRK55_RS02765 0.72 -0.6
597,064 - LRK55_RS02765 0.72 -1.4
597,064 - LRK55_RS02765 0.72 -0.6
597,141 + LRK55_RS02765 0.78 -0.0

Or see this region's nucleotide sequence