Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02180

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02175 and LRK55_RS02180 are separated by 190 nucleotidesLRK55_RS02180 and LRK55_RS02185 are separated by 119 nucleotidesLRK55_RS02185 and LRK55_RS02190 are separated by 304 nucleotides LRK55_RS02175: LRK55_RS02175 - glycine zipper 2TM domain-containing protein, at 475,680 to 476,207 _RS02175 LRK55_RS02180: LRK55_RS02180 - cysteine--tRNA ligase, at 476,398 to 477,768 _RS02180 LRK55_RS02185: LRK55_RS02185 - SufE family protein, at 477,888 to 478,322 _RS02185 LRK55_RS02190: LRK55_RS02190 - TonB-dependent siderophore receptor, at 478,627 to 480,726 _RS02190 Position (kb) 476 477 478Strain fitness (log2 ratio) -1 0 1 2at 475.531 kb on + strandat 475.532 kb on - strandat 475.532 kb on - strandat 475.532 kb on - strandat 475.543 kb on - strandat 475.544 kb on + strandat 475.544 kb on + strandat 475.544 kb on + strandat 475.544 kb on + strandat 475.544 kb on + strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 475.545 kb on - strandat 476.251 kb on - strandat 476.283 kb on - strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.290 kb on + strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.291 kb on - strandat 476.330 kb on + strandat 476.330 kb on + strandat 476.331 kb on - strandat 476.331 kb on - strandat 476.340 kb on + strandat 476.340 kb on + strandat 476.340 kb on + strandat 476.340 kb on + strandat 476.340 kb on + strandat 476.340 kb on + strandat 476.341 kb on - strandat 477.792 kb on + strandat 477.792 kb on + strandat 477.793 kb on - strandat 478.374 kb on + strandat 478.374 kb on + strandat 478.374 kb on + strandat 478.374 kb on + strandat 478.375 kb on - strandat 478.453 kb on + strandat 478.454 kb on - strandat 478.454 kb on - strandat 478.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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475,531 + +0.6
475,532 - -0.8
475,532 - -0.5
475,532 - -0.8
475,543 - +0.1
475,544 + -0.6
475,544 + +0.6
475,544 + -0.0
475,544 + +0.4
475,544 + -0.7
475,545 - +1.1
475,545 - -0.0
475,545 - -0.7
475,545 - -0.1
475,545 - +2.1
475,545 - +0.6
475,545 - +0.2
475,545 - +1.2
475,545 - -0.5
476,251 - -0.9
476,283 - -1.7
476,290 + +0.1
476,290 + +0.3
476,290 + -0.7
476,290 + -1.6
476,290 + -1.2
476,290 + +0.4
476,290 + -0.6
476,290 + +0.7
476,291 - +0.4
476,291 - -0.4
476,291 - +2.2
476,291 - +0.3
476,291 - +0.1
476,291 - +0.1
476,291 - -0.1
476,291 - +0.1
476,291 - +0.9
476,291 - -0.5
476,291 - -0.3
476,291 - +2.2
476,330 + +0.5
476,330 + -0.4
476,331 - +0.7
476,331 - +0.1
476,340 + +0.6
476,340 + +1.1
476,340 + +0.8
476,340 + -1.5
476,340 + +0.4
476,340 + -0.2
476,341 - -1.3
477,792 + -1.7
477,792 + -0.5
477,793 - -0.7
478,374 + -0.3
478,374 + -0.1
478,374 + -1.3
478,374 + +0.8
478,375 - +0.6
478,453 + -1.6
478,454 - -1.5
478,454 - +1.1
478,759 + +0.1

Or see this region's nucleotide sequence