Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01650

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01640 and LRK55_RS01645 are separated by 52 nucleotidesLRK55_RS01645 and LRK55_RS01650 are separated by 43 nucleotidesLRK55_RS01650 and LRK55_RS01655 overlap by 4 nucleotidesLRK55_RS01655 and LRK55_RS01660 are separated by 354 nucleotides LRK55_RS01640: LRK55_RS01640 - endonuclease III, at 347,612 to 348,247 _RS01640 LRK55_RS01645: LRK55_RS01645 - class I SAM-dependent methyltransferase, at 348,300 to 348,908 _RS01645 LRK55_RS01650: LRK55_RS01650 - sensor domain-containing protein, at 348,952 to 349,869 _RS01650 LRK55_RS01655: LRK55_RS01655 - PadR family transcriptional regulator, at 349,866 to 350,231 _RS01655 LRK55_RS01660: LRK55_RS01660 - hypothetical protein, at 350,586 to 350,969 _RS01660 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2 3at 348.071 kb on - strand, within LRK55_RS01640at 348.164 kb on + strand, within LRK55_RS01640at 348.164 kb on + strand, within LRK55_RS01640at 348.165 kb on - strand, within LRK55_RS01640at 348.165 kb on - strand, within LRK55_RS01640at 348.224 kb on + strandat 348.224 kb on + strandat 348.245 kb on + strandat 348.246 kb on - strandat 348.361 kb on + strand, within LRK55_RS01645at 348.361 kb on + strand, within LRK55_RS01645at 348.362 kb on - strand, within LRK55_RS01645at 348.362 kb on - strand, within LRK55_RS01645at 348.362 kb on - strand, within LRK55_RS01645at 348.412 kb on + strand, within LRK55_RS01645at 348.412 kb on + strand, within LRK55_RS01645at 348.412 kb on + strand, within LRK55_RS01645at 348.412 kb on + strand, within LRK55_RS01645at 348.413 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.554 kb on - strand, within LRK55_RS01645at 348.561 kb on + strand, within LRK55_RS01645at 348.561 kb on + strand, within LRK55_RS01645at 348.561 kb on + strand, within LRK55_RS01645at 348.561 kb on + strand, within LRK55_RS01645at 348.562 kb on - strand, within LRK55_RS01645at 348.562 kb on - strand, within LRK55_RS01645at 348.670 kb on + strand, within LRK55_RS01645at 348.670 kb on + strand, within LRK55_RS01645at 348.670 kb on + strand, within LRK55_RS01645at 348.670 kb on + strand, within LRK55_RS01645at 348.670 kb on + strand, within LRK55_RS01645at 348.671 kb on - strand, within LRK55_RS01645at 348.787 kb on + strand, within LRK55_RS01645at 348.787 kb on + strand, within LRK55_RS01645at 348.787 kb on + strand, within LRK55_RS01645at 348.788 kb on - strand, within LRK55_RS01645at 348.788 kb on - strand, within LRK55_RS01645at 348.788 kb on - strand, within LRK55_RS01645at 348.788 kb on - strand, within LRK55_RS01645at 348.788 kb on - strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.790 kb on + strand, within LRK55_RS01645at 348.791 kb on - strand, within LRK55_RS01645at 348.791 kb on - strand, within LRK55_RS01645at 348.791 kb on - strand, within LRK55_RS01645at 348.791 kb on - strand, within LRK55_RS01645at 348.883 kb on + strandat 348.883 kb on + strandat 348.895 kb on + strandat 348.896 kb on - strandat 348.896 kb on - strandat 348.896 kb on - strandat 348.896 kb on - strandat 348.938 kb on + strandat 348.938 kb on + strandat 348.939 kb on - strandat 348.939 kb on - strandat 348.939 kb on - strandat 348.939 kb on - strandat 348.939 kb on - strandat 348.970 kb on + strandat 349.226 kb on + strand, within LRK55_RS01650at 349.226 kb on + strand, within LRK55_RS01650at 349.226 kb on + strand, within LRK55_RS01650at 349.226 kb on + strand, within LRK55_RS01650at 349.226 kb on + strand, within LRK55_RS01650at 349.227 kb on - strand, within LRK55_RS01650at 349.227 kb on - strand, within LRK55_RS01650at 349.259 kb on + strand, within LRK55_RS01650at 349.259 kb on + strand, within LRK55_RS01650at 349.259 kb on + strand, within LRK55_RS01650at 349.259 kb on + strand, within LRK55_RS01650at 349.259 kb on + strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.260 kb on - strand, within LRK55_RS01650at 349.338 kb on - strand, within LRK55_RS01650at 349.505 kb on + strand, within LRK55_RS01650at 349.505 kb on + strand, within LRK55_RS01650at 349.505 kb on + strand, within LRK55_RS01650at 349.505 kb on + strand, within LRK55_RS01650at 349.505 kb on + strand, within LRK55_RS01650at 349.506 kb on - strand, within LRK55_RS01650at 349.506 kb on - strand, within LRK55_RS01650at 349.506 kb on - strand, within LRK55_RS01650at 349.506 kb on - strand, within LRK55_RS01650at 349.506 kb on - strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.538 kb on + strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.539 kb on - strand, within LRK55_RS01650at 349.554 kb on - strand, within LRK55_RS01650at 349.554 kb on - strand, within LRK55_RS01650at 349.554 kb on - strand, within LRK55_RS01650at 349.554 kb on - strand, within LRK55_RS01650at 349.554 kb on - strand, within LRK55_RS01650at 349.661 kb on + strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.662 kb on - strand, within LRK55_RS01650at 349.691 kb on + strand, within LRK55_RS01650at 349.691 kb on + strand, within LRK55_RS01650at 349.691 kb on + strand, within LRK55_RS01650at 349.778 kb on + strandat 349.778 kb on + strandat 349.778 kb on + strandat 349.778 kb on + strandat 349.779 kb on - strandat 349.842 kb on - strandat 349.941 kb on + strand, within LRK55_RS01655at 349.942 kb on - strand, within LRK55_RS01655at 349.942 kb on - strand, within LRK55_RS01655at 349.942 kb on - strand, within LRK55_RS01655at 349.942 kb on - strand, within LRK55_RS01655at 349.969 kb on + strand, within LRK55_RS01655at 349.969 kb on + strand, within LRK55_RS01655at 349.969 kb on + strand, within LRK55_RS01655at 349.970 kb on - strand, within LRK55_RS01655at 349.972 kb on + strand, within LRK55_RS01655at 349.972 kb on + strand, within LRK55_RS01655at 349.972 kb on + strand, within LRK55_RS01655at 349.972 kb on + strand, within LRK55_RS01655at 349.973 kb on - strand, within LRK55_RS01655at 349.973 kb on - strand, within LRK55_RS01655at 350.053 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.125 kb on + strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.126 kb on - strand, within LRK55_RS01655at 350.245 kb on - strandat 350.275 kb on - strandat 350.302 kb on + strandat 350.302 kb on + strandat 350.302 kb on + strandat 350.302 kb on + strandat 350.302 kb on + strandat 350.302 kb on + strandat 350.303 kb on - strandat 350.303 kb on - strandat 350.360 kb on + strandat 350.540 kb on + strandat 350.540 kb on + strandat 350.541 kb on - strandat 350.541 kb on - strandat 350.541 kb on - strandat 350.579 kb on + strandat 350.580 kb on - strandat 350.580 kb on - strandat 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.718 kb on + strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660at 350.719 kb on - strand, within LRK55_RS01660

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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348,071 - LRK55_RS01640 0.72 +0.0
348,164 + LRK55_RS01640 0.87 -0.1
348,164 + LRK55_RS01640 0.87 +1.9
348,165 - LRK55_RS01640 0.87 +0.1
348,165 - LRK55_RS01640 0.87 -0.0
348,224 + +0.1
348,224 + +0.2
348,245 + +0.2
348,246 - +0.1
348,361 + LRK55_RS01645 0.10 +0.0
348,361 + LRK55_RS01645 0.10 +0.0
348,362 - LRK55_RS01645 0.10 +0.2
348,362 - LRK55_RS01645 0.10 +0.2
348,362 - LRK55_RS01645 0.10 -0.2
348,412 + LRK55_RS01645 0.18 +0.3
348,412 + LRK55_RS01645 0.18 -0.4
348,412 + LRK55_RS01645 0.18 -0.9
348,412 + LRK55_RS01645 0.18 -0.0
348,413 - LRK55_RS01645 0.19 -0.0
348,554 - LRK55_RS01645 0.42 +0.2
348,554 - LRK55_RS01645 0.42 +0.7
348,554 - LRK55_RS01645 0.42 +0.1
348,554 - LRK55_RS01645 0.42 -0.1
348,554 - LRK55_RS01645 0.42 -0.3
348,554 - LRK55_RS01645 0.42 +0.6
348,561 + LRK55_RS01645 0.43 +0.5
348,561 + LRK55_RS01645 0.43 +0.1
348,561 + LRK55_RS01645 0.43 -0.8
348,561 + LRK55_RS01645 0.43 -1.7
348,562 - LRK55_RS01645 0.43 +0.4
348,562 - LRK55_RS01645 0.43 +0.4
348,670 + LRK55_RS01645 0.61 -0.0
348,670 + LRK55_RS01645 0.61 -0.6
348,670 + LRK55_RS01645 0.61 -1.3
348,670 + LRK55_RS01645 0.61 +0.8
348,670 + LRK55_RS01645 0.61 +1.1
348,671 - LRK55_RS01645 0.61 -0.3
348,787 + LRK55_RS01645 0.80 +0.1
348,787 + LRK55_RS01645 0.80 -0.4
348,787 + LRK55_RS01645 0.80 -0.2
348,788 - LRK55_RS01645 0.80 -0.5
348,788 - LRK55_RS01645 0.80 -1.2
348,788 - LRK55_RS01645 0.80 +0.1
348,788 - LRK55_RS01645 0.80 +0.5
348,788 - LRK55_RS01645 0.80 -0.3
348,790 + LRK55_RS01645 0.80 +0.8
348,790 + LRK55_RS01645 0.80 -0.2
348,790 + LRK55_RS01645 0.80 -0.7
348,790 + LRK55_RS01645 0.80 -0.2
348,790 + LRK55_RS01645 0.80 +1.5
348,790 + LRK55_RS01645 0.80 +0.1
348,790 + LRK55_RS01645 0.80 +0.7
348,790 + LRK55_RS01645 0.80 -0.5
348,790 + LRK55_RS01645 0.80 +1.5
348,790 + LRK55_RS01645 0.80 -0.2
348,791 - LRK55_RS01645 0.81 -0.5
348,791 - LRK55_RS01645 0.81 -1.2
348,791 - LRK55_RS01645 0.81 -1.2
348,791 - LRK55_RS01645 0.81 +3.6
348,883 + +1.0
348,883 + +0.2
348,895 + -1.9
348,896 - +0.5
348,896 - +0.7
348,896 - +0.1
348,896 - -0.9
348,938 + +0.1
348,938 + +0.2
348,939 - +0.8
348,939 - +0.4
348,939 - +0.0
348,939 - +0.5
348,939 - +0.0
348,970 + +0.3
349,226 + LRK55_RS01650 0.30 +0.2
349,226 + LRK55_RS01650 0.30 -0.3
349,226 + LRK55_RS01650 0.30 +0.0
349,226 + LRK55_RS01650 0.30 -1.1
349,226 + LRK55_RS01650 0.30 -0.5
349,227 - LRK55_RS01650 0.30 +0.1
349,227 - LRK55_RS01650 0.30 -1.7
349,259 + LRK55_RS01650 0.33 -0.5
349,259 + LRK55_RS01650 0.33 +2.3
349,259 + LRK55_RS01650 0.33 -1.3
349,259 + LRK55_RS01650 0.33 +0.4
349,259 + LRK55_RS01650 0.33 -0.5
349,260 - LRK55_RS01650 0.34 +1.1
349,260 - LRK55_RS01650 0.34 +1.1
349,260 - LRK55_RS01650 0.34 +1.1
349,260 - LRK55_RS01650 0.34 -0.5
349,260 - LRK55_RS01650 0.34 +0.1
349,260 - LRK55_RS01650 0.34 +0.3
349,338 - LRK55_RS01650 0.42 +0.3
349,505 + LRK55_RS01650 0.60 +0.3
349,505 + LRK55_RS01650 0.60 -0.7
349,505 + LRK55_RS01650 0.60 +0.4
349,505 + LRK55_RS01650 0.60 -0.0
349,505 + LRK55_RS01650 0.60 -0.7
349,506 - LRK55_RS01650 0.60 -0.5
349,506 - LRK55_RS01650 0.60 -0.1
349,506 - LRK55_RS01650 0.60 +0.8
349,506 - LRK55_RS01650 0.60 -1.1
349,506 - LRK55_RS01650 0.60 +0.3
349,538 + LRK55_RS01650 0.64 -2.1
349,538 + LRK55_RS01650 0.64 +0.2
349,538 + LRK55_RS01650 0.64 +0.0
349,538 + LRK55_RS01650 0.64 -1.1
349,538 + LRK55_RS01650 0.64 -0.5
349,538 + LRK55_RS01650 0.64 -2.2
349,538 + LRK55_RS01650 0.64 -0.4
349,538 + LRK55_RS01650 0.64 +0.6
349,538 + LRK55_RS01650 0.64 -0.1
349,538 + LRK55_RS01650 0.64 -1.0
349,538 + LRK55_RS01650 0.64 +0.8
349,538 + LRK55_RS01650 0.64 +0.3
349,539 - LRK55_RS01650 0.64 -0.4
349,539 - LRK55_RS01650 0.64 -0.2
349,539 - LRK55_RS01650 0.64 -0.1
349,539 - LRK55_RS01650 0.64 -0.9
349,539 - LRK55_RS01650 0.64 +0.1
349,539 - LRK55_RS01650 0.64 +0.1
349,554 - LRK55_RS01650 0.66 +1.3
349,554 - LRK55_RS01650 0.66 -2.5
349,554 - LRK55_RS01650 0.66 -1.9
349,554 - LRK55_RS01650 0.66 -0.1
349,554 - LRK55_RS01650 0.66 -0.2
349,661 + LRK55_RS01650 0.77 -0.4
349,662 - LRK55_RS01650 0.77 -0.7
349,662 - LRK55_RS01650 0.77 -0.4
349,662 - LRK55_RS01650 0.77 -0.3
349,662 - LRK55_RS01650 0.77 -0.3
349,662 - LRK55_RS01650 0.77 -0.1
349,662 - LRK55_RS01650 0.77 -0.7
349,691 + LRK55_RS01650 0.81 -0.2
349,691 + LRK55_RS01650 0.81 +0.3
349,691 + LRK55_RS01650 0.81 -2.1
349,778 + +0.9
349,778 + +0.2
349,778 + -0.6
349,778 + +1.0
349,779 - +0.2
349,842 - +0.6
349,941 + LRK55_RS01655 0.20 -0.3
349,942 - LRK55_RS01655 0.21 +2.0
349,942 - LRK55_RS01655 0.21 -0.0
349,942 - LRK55_RS01655 0.21 +0.6
349,942 - LRK55_RS01655 0.21 +0.5
349,969 + LRK55_RS01655 0.28 -0.7
349,969 + LRK55_RS01655 0.28 -0.9
349,969 + LRK55_RS01655 0.28 +0.2
349,970 - LRK55_RS01655 0.28 -0.4
349,972 + LRK55_RS01655 0.29 -0.7
349,972 + LRK55_RS01655 0.29 -0.4
349,972 + LRK55_RS01655 0.29 +0.4
349,972 + LRK55_RS01655 0.29 -0.2
349,973 - LRK55_RS01655 0.29 -0.6
349,973 - LRK55_RS01655 0.29 -1.4
350,053 + LRK55_RS01655 0.51 -0.3
350,125 + LRK55_RS01655 0.71 -0.9
350,125 + LRK55_RS01655 0.71 -1.0
350,125 + LRK55_RS01655 0.71 -0.6
350,125 + LRK55_RS01655 0.71 -0.8
350,125 + LRK55_RS01655 0.71 +0.8
350,125 + LRK55_RS01655 0.71 -0.2
350,125 + LRK55_RS01655 0.71 -1.1
350,126 - LRK55_RS01655 0.71 -2.5
350,126 - LRK55_RS01655 0.71 -0.9
350,126 - LRK55_RS01655 0.71 -0.2
350,126 - LRK55_RS01655 0.71 -0.1
350,126 - LRK55_RS01655 0.71 -0.2
350,126 - LRK55_RS01655 0.71 -0.0
350,126 - LRK55_RS01655 0.71 +0.4
350,126 - LRK55_RS01655 0.71 -0.5
350,126 - LRK55_RS01655 0.71 -0.3
350,126 - LRK55_RS01655 0.71 +1.0
350,126 - LRK55_RS01655 0.71 -0.2
350,126 - LRK55_RS01655 0.71 +0.5
350,245 - +0.4
350,275 - +0.3
350,302 + -0.3
350,302 + -0.2
350,302 + -0.2
350,302 + -0.8
350,302 + -0.6
350,302 + +0.0
350,303 - -0.5
350,303 - -0.7
350,360 + +0.1
350,540 + -2.2
350,540 + -1.7
350,541 - +0.4
350,541 - +0.2
350,541 - -1.0
350,579 + -0.2
350,580 - +0.7
350,580 - +0.5
350,718 + LRK55_RS01660 0.34 +0.2
350,718 + LRK55_RS01660 0.34 -0.2
350,718 + LRK55_RS01660 0.34 -0.6
350,718 + LRK55_RS01660 0.34 -0.0
350,718 + LRK55_RS01660 0.34 +1.0
350,718 + LRK55_RS01660 0.34 +0.9
350,718 + LRK55_RS01660 0.34 -0.2
350,718 + LRK55_RS01660 0.34 +0.6
350,718 + LRK55_RS01660 0.34 +0.2
350,719 - LRK55_RS01660 0.35 +1.2
350,719 - LRK55_RS01660 0.35 +0.4
350,719 - LRK55_RS01660 0.35 -1.0
350,719 - LRK55_RS01660 0.35 -1.8
350,719 - LRK55_RS01660 0.35 -0.1
350,719 - LRK55_RS01660 0.35 -0.1
350,719 - LRK55_RS01660 0.35 +0.8

Or see this region's nucleotide sequence