Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS00965

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS00955 and LRK55_RS00960 are separated by 196 nucleotidesLRK55_RS00960 and LRK55_RS00965 are separated by 35 nucleotidesLRK55_RS00965 and LRK55_RS00970 are separated by 145 nucleotides LRK55_RS00955: LRK55_RS00955 - acyl carrier protein, at 213,201 to 213,440 _RS00955 LRK55_RS00960: LRK55_RS00960 - 3-oxoacyl-ACP reductase FabG, at 213,637 to 214,380 _RS00960 LRK55_RS00965: LRK55_RS00965 - ACP S-malonyltransferase, at 214,416 to 215,363 _RS00965 LRK55_RS00970: LRK55_RS00970 - beta-ketoacyl-ACP synthase III, at 215,509 to 216,483 _RS00970 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1at 213.465 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.514 kb on - strandat 213.521 kb on - strandat 213.638 kb on + strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 213.648 kb on - strandat 215.419 kb on - strandat 215.419 kb on - strandat 215.428 kb on + strandat 215.428 kb on + strandat 215.428 kb on + strandat 215.428 kb on + strandat 215.428 kb on + strandat 215.428 kb on + strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strandat 215.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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213,465 - -1.4
213,514 - -0.6
213,514 - -0.9
213,514 - +0.6
213,514 - +0.2
213,514 - -0.9
213,514 - +1.0
213,514 - +0.6
213,514 - +1.2
213,521 - +0.1
213,638 + -0.8
213,648 - -0.5
213,648 - -0.2
213,648 - +1.6
213,648 - +0.1
213,648 - -0.2
213,648 - -2.2
213,648 - -0.2
213,648 - +0.2
213,648 - -0.4
213,648 - +0.5
213,648 - -3.1
213,648 - -1.3
213,648 - -0.7
213,648 - +0.9
213,648 - -1.1
213,648 - +0.2
213,648 - +1.4
213,648 - -0.3
213,648 - +0.2
213,648 - -0.2
213,648 - -0.7
213,648 - -1.8
213,648 - -0.6
213,648 - +0.2
213,648 - -1.8
213,648 - -1.2
213,648 - -1.2
213,648 - -0.2
213,648 - -1.6
213,648 - -1.6
213,648 - -1.2
213,648 - +1.0
213,648 - -1.4
213,648 - -0.2
213,648 - +0.5
215,419 - +0.9
215,419 - +0.6
215,428 + +0.2
215,428 + +0.2
215,428 + +0.4
215,428 + -0.1
215,428 + -2.9
215,428 + -0.1
215,429 - +0.3
215,429 - +1.2
215,429 - -0.2
215,429 - -1.0
215,429 - +0.3
215,429 - -2.0
215,429 - -0.3
215,429 - -0.4
215,429 - -0.1

Or see this region's nucleotide sequence