Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00760 and LRK55_RS00765 are separated by 140 nucleotides LRK55_RS00765 and LRK55_RS00770 are separated by 145 nucleotides LRK55_RS00770 and LRK55_RS00775 are separated by 3 nucleotides LRK55_RS00775 and LRK55_RS00780 are separated by 98 nucleotides
LRK55_RS00760: LRK55_RS00760 - Hsp20/alpha crystallin family protein, at 169,651 to 170,109
_RS00760
LRK55_RS00765: LRK55_RS00765 - peroxiredoxin, at 170,250 to 170,732
_RS00765
LRK55_RS00770: LRK55_RS00770 - hypothetical protein, at 170,878 to 171,309
_RS00770
LRK55_RS00775: LRK55_RS00775 - helix-turn-helix domain-containing protein, at 171,313 to 171,537
_RS00775
LRK55_RS00780: LRK55_RS00780 - DNA gyrase subunit A, at 171,636 to 174,209
_RS00780
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.931 kb on + strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 169.932 kb on - strand, within LRK55_RS00760 at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.115 kb on + strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.116 kb on - strand at 170.216 kb on - strand at 170.216 kb on - strand at 170.309 kb on + strand, within LRK55_RS00765 at 170.309 kb on + strand, within LRK55_RS00765 at 170.309 kb on + strand, within LRK55_RS00765 at 170.310 kb on - strand, within LRK55_RS00765 at 170.310 kb on - strand, within LRK55_RS00765 at 170.310 kb on - strand, within LRK55_RS00765 at 170.310 kb on - strand, within LRK55_RS00765 at 170.427 kb on + strand, within LRK55_RS00765 at 170.428 kb on - strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.484 kb on + strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.485 kb on - strand, within LRK55_RS00765 at 170.634 kb on + strand, within LRK55_RS00765 at 170.634 kb on + strand, within LRK55_RS00765 at 170.635 kb on - strand, within LRK55_RS00765 at 170.635 kb on - strand, within LRK55_RS00765 at 170.635 kb on - strand, within LRK55_RS00765 at 170.776 kb on - strand at 170.785 kb on + strand at 170.785 kb on + strand at 170.785 kb on + strand at 170.786 kb on - strand at 170.801 kb on - strand at 170.823 kb on + strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.824 kb on - strand at 170.828 kb on + strand at 170.828 kb on + strand at 170.828 kb on + strand at 170.829 kb on - strand at 170.829 kb on - strand at 170.829 kb on - strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.830 kb on + strand at 170.831 kb on - strand at 170.831 kb on - strand at 170.831 kb on - strand at 170.831 kb on - strand at 170.831 kb on - strand at 170.831 kb on - strand at 170.912 kb on + strand at 170.913 kb on - strand at 170.913 kb on - strand at 170.991 kb on + strand, within LRK55_RS00770 at 170.992 kb on - strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.005 kb on + strand, within LRK55_RS00770 at 171.006 kb on - strand, within LRK55_RS00770 at 171.006 kb on - strand, within LRK55_RS00770 at 171.032 kb on + strand, within LRK55_RS00770 at 171.032 kb on + strand, within LRK55_RS00770 at 171.032 kb on + strand, within LRK55_RS00770 at 171.032 kb on + strand, within LRK55_RS00770 at 171.032 kb on + strand, within LRK55_RS00770 at 171.033 kb on - strand, within LRK55_RS00770 at 171.033 kb on - strand, within LRK55_RS00770 at 171.033 kb on - strand, within LRK55_RS00770 at 171.033 kb on - strand, within LRK55_RS00770 at 171.170 kb on + strand, within LRK55_RS00770 at 171.170 kb on + strand, within LRK55_RS00770 at 171.171 kb on - strand, within LRK55_RS00770 at 171.171 kb on - strand, within LRK55_RS00770 at 171.206 kb on + strand, within LRK55_RS00770 at 171.207 kb on - strand, within LRK55_RS00770 at 171.207 kb on - strand, within LRK55_RS00770 at 171.207 kb on - strand, within LRK55_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 169,931 + LRK55_RS00760 0.61 -0.3 169,931 + LRK55_RS00760 0.61 +0.6 169,931 + LRK55_RS00760 0.61 +0.1 169,931 + LRK55_RS00760 0.61 -1.8 169,931 + LRK55_RS00760 0.61 +0.3 169,931 + LRK55_RS00760 0.61 -1.2 169,931 + LRK55_RS00760 0.61 -0.2 169,931 + LRK55_RS00760 0.61 +0.6 169,931 + LRK55_RS00760 0.61 -0.3 169,931 + LRK55_RS00760 0.61 +0.8 169,931 + LRK55_RS00760 0.61 -0.4 169,932 - LRK55_RS00760 0.61 +0.2 169,932 - LRK55_RS00760 0.61 -1.1 169,932 - LRK55_RS00760 0.61 +0.9 169,932 - LRK55_RS00760 0.61 +0.4 169,932 - LRK55_RS00760 0.61 +0.2 169,932 - LRK55_RS00760 0.61 +0.8 170,115 + +1.0 170,115 + +2.5 170,115 + -0.0 170,115 + -0.3 170,115 + -0.1 170,115 + +0.0 170,115 + +1.0 170,115 + +1.0 170,115 + +0.2 170,115 + +0.5 170,115 + -0.2 170,115 + +0.6 170,115 + +0.1 170,115 + -1.5 170,115 + -1.4 170,115 + +1.2 170,115 + -0.0 170,115 + -0.8 170,115 + +1.7 170,115 + +0.3 170,115 + +0.7 170,115 + -0.5 170,115 + +1.1 170,116 - +0.3 170,116 - -1.2 170,116 - -1.3 170,116 - -0.1 170,116 - +0.6 170,116 - -0.3 170,116 - +0.4 170,116 - +2.5 170,116 - +0.2 170,116 - +0.6 170,116 - -0.0 170,116 - +0.2 170,116 - -0.0 170,116 - +0.6 170,116 - -0.2 170,116 - +1.0 170,116 - -0.5 170,116 - +1.3 170,116 - +0.0 170,116 - -1.6 170,216 - +0.7 170,216 - +0.3 170,309 + LRK55_RS00765 0.12 -0.0 170,309 + LRK55_RS00765 0.12 +1.3 170,309 + LRK55_RS00765 0.12 +0.7 170,310 - LRK55_RS00765 0.12 -2.3 170,310 - LRK55_RS00765 0.12 -2.1 170,310 - LRK55_RS00765 0.12 -0.6 170,310 - LRK55_RS00765 0.12 +0.2 170,427 + LRK55_RS00765 0.37 -1.1 170,428 - LRK55_RS00765 0.37 -0.9 170,484 + LRK55_RS00765 0.48 +0.8 170,484 + LRK55_RS00765 0.48 +0.7 170,484 + LRK55_RS00765 0.48 +0.5 170,484 + LRK55_RS00765 0.48 +0.3 170,484 + LRK55_RS00765 0.48 +0.6 170,484 + LRK55_RS00765 0.48 -0.2 170,484 + LRK55_RS00765 0.48 -0.2 170,484 + LRK55_RS00765 0.48 +0.5 170,484 + LRK55_RS00765 0.48 -0.2 170,484 + LRK55_RS00765 0.48 -0.1 170,484 + LRK55_RS00765 0.48 +0.4 170,484 + LRK55_RS00765 0.48 +0.7 170,485 - LRK55_RS00765 0.49 -0.7 170,485 - LRK55_RS00765 0.49 -0.2 170,485 - LRK55_RS00765 0.49 +1.3 170,485 - LRK55_RS00765 0.49 +0.5 170,485 - LRK55_RS00765 0.49 -0.7 170,485 - LRK55_RS00765 0.49 +0.6 170,485 - LRK55_RS00765 0.49 +0.6 170,485 - LRK55_RS00765 0.49 +1.6 170,485 - LRK55_RS00765 0.49 +0.6 170,485 - LRK55_RS00765 0.49 +1.1 170,485 - LRK55_RS00765 0.49 -0.5 170,485 - LRK55_RS00765 0.49 -1.1 170,634 + LRK55_RS00765 0.80 +0.3 170,634 + LRK55_RS00765 0.80 +0.5 170,635 - LRK55_RS00765 0.80 +0.7 170,635 - LRK55_RS00765 0.80 +0.3 170,635 - LRK55_RS00765 0.80 -0.2 170,776 - -0.1 170,785 + +0.3 170,785 + +0.4 170,785 + -0.0 170,786 - -0.3 170,801 - -0.3 170,823 + +1.1 170,824 - +0.9 170,824 - -0.7 170,824 - +0.6 170,824 - +1.2 170,824 - +0.6 170,824 - +0.9 170,824 - +0.1 170,824 - -0.4 170,828 + +0.2 170,828 + +0.5 170,828 + +0.6 170,829 - -0.0 170,829 - -2.8 170,829 - +0.5 170,830 + -0.1 170,830 + -0.8 170,830 + -1.1 170,830 + -0.5 170,830 + -0.2 170,830 + -0.6 170,830 + +0.1 170,830 + +0.2 170,830 + -0.1 170,831 - -0.9 170,831 - -0.2 170,831 - -0.2 170,831 - +0.6 170,831 - -0.7 170,831 - -0.4 170,912 + -1.8 170,913 - +0.1 170,913 - +0.2 170,991 + LRK55_RS00770 0.26 +0.6 170,992 - LRK55_RS00770 0.26 -2.4 171,005 + LRK55_RS00770 0.29 -0.5 171,005 + LRK55_RS00770 0.29 +0.9 171,005 + LRK55_RS00770 0.29 +0.2 171,005 + LRK55_RS00770 0.29 -1.4 171,005 + LRK55_RS00770 0.29 -0.1 171,005 + LRK55_RS00770 0.29 +2.2 171,006 - LRK55_RS00770 0.30 +1.2 171,006 - LRK55_RS00770 0.30 -0.7 171,032 + LRK55_RS00770 0.36 -0.4 171,032 + LRK55_RS00770 0.36 -0.4 171,032 + LRK55_RS00770 0.36 -0.4 171,032 + LRK55_RS00770 0.36 -1.1 171,032 + LRK55_RS00770 0.36 +0.5 171,033 - LRK55_RS00770 0.36 +0.2 171,033 - LRK55_RS00770 0.36 +0.2 171,033 - LRK55_RS00770 0.36 +0.2 171,033 - LRK55_RS00770 0.36 -0.7 171,170 + LRK55_RS00770 0.68 -0.6 171,170 + LRK55_RS00770 0.68 +0.6 171,171 - LRK55_RS00770 0.68 -0.5 171,171 - LRK55_RS00770 0.68 +0.1 171,206 + LRK55_RS00770 0.76 +0.5 171,207 - LRK55_RS00770 0.76 +0.2 171,207 - LRK55_RS00770 0.76 -0.8 171,207 - LRK55_RS00770 0.76 -0.2
Or see this region's nucleotide sequence