Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00095 and LRK55_RS00100 are separated by 304 nucleotides LRK55_RS00100 and LRK55_RS00105 are separated by 83 nucleotides LRK55_RS00105 and LRK55_RS00110 are separated by 129 nucleotides LRK55_RS00110 and LRK55_RS00115 are separated by 66 nucleotides LRK55_RS00115 and LRK55_RS00120 are separated by 72 nucleotides
LRK55_RS00095: LRK55_RS00095 - HU family DNA-binding protein, at 17,640 to 18,020
_RS00095
LRK55_RS00100: LRK55_RS00100 - tRNA-Cys, at 18,325 to 18,398
_RS00100
LRK55_RS00105: LRK55_RS00105 - tRNA-Gly, at 18,482 to 18,557
_RS00105
LRK55_RS00110: LRK55_RS00110 - tRNA-Gly, at 18,687 to 18,762
_RS00110
LRK55_RS00115: LRK55_RS00115 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 18,829 to 19,431
_RS00115
LRK55_RS00120: LRK55_RS00120 - excinuclease ABC subunit UvrC, at 19,504 to 21,330
_RS00120
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.841 kb on + strand, within LRK55_RS00095 at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.038 kb on + strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.039 kb on - strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.056 kb on + strand at 18.057 kb on - strand at 18.057 kb on - strand at 18.057 kb on - strand at 18.057 kb on - strand at 18.057 kb on - strand at 18.057 kb on - strand at 18.079 kb on + strand at 18.079 kb on + strand at 18.079 kb on + strand at 18.080 kb on - strand at 18.080 kb on - strand at 18.173 kb on + strand at 18.173 kb on + strand at 18.173 kb on + strand at 18.173 kb on + strand at 18.174 kb on - strand at 18.174 kb on - strand at 18.174 kb on - strand at 18.174 kb on - strand at 18.442 kb on - strand at 18.538 kb on - strand, within LRK55_RS00105 at 18.538 kb on - strand, within LRK55_RS00105 at 18.538 kb on - strand, within LRK55_RS00105 at 18.538 kb on - strand, within LRK55_RS00105 at 18.600 kb on - strand at 18.600 kb on - strand at 18.600 kb on - strand at 18.600 kb on - strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.646 kb on + strand at 18.647 kb on - strand at 18.647 kb on - strand at 18.647 kb on - strand at 18.647 kb on - strand at 18.647 kb on - strand at 18.781 kb on - strand at 18.781 kb on - strand at 18.784 kb on - strand at 18.784 kb on - strand at 19.523 kb on + strand at 19.523 kb on + strand at 19.523 kb on + strand at 19.524 kb on - strand at 19.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 17,841 + LRK55_RS00095 0.53 -1.4 18,038 + +2.8 18,038 + -1.1 18,038 + -1.6 18,038 + -2.3 18,038 + -0.6 18,038 + -1.6 18,038 + +2.2 18,038 + +0.5 18,038 + -1.3 18,038 + +0.4 18,039 - +0.2 18,039 - -1.0 18,039 - -2.1 18,039 - +0.2 18,039 - +0.7 18,039 - -0.0 18,039 - +0.1 18,039 - +0.1 18,039 - -0.6 18,056 + -0.8 18,056 + -2.7 18,056 + -2.3 18,056 + -0.4 18,056 + +0.2 18,057 - +0.5 18,057 - -0.5 18,057 - +0.6 18,057 - +0.6 18,057 - -1.0 18,057 - +0.7 18,079 + -1.3 18,079 + -0.8 18,079 + -0.0 18,080 - -0.1 18,080 - -1.0 18,173 + -0.2 18,173 + -1.4 18,173 + +0.1 18,173 + -0.3 18,174 - -0.2 18,174 - +0.6 18,174 - -0.4 18,174 - +0.7 18,442 - +0.9 18,538 - LRK55_RS00105 0.74 -0.8 18,538 - LRK55_RS00105 0.74 -0.1 18,538 - LRK55_RS00105 0.74 -1.4 18,538 - LRK55_RS00105 0.74 -0.1 18,600 - +0.2 18,600 - -0.3 18,600 - -0.7 18,600 - -0.3 18,646 + -0.2 18,646 + -0.4 18,646 + +2.2 18,646 + -0.8 18,646 + -1.0 18,646 + +1.6 18,646 + -0.2 18,646 + -0.5 18,647 - +1.0 18,647 - +0.7 18,647 - -0.2 18,647 - +0.4 18,647 - +0.4 18,781 - +0.0 18,781 - +0.3 18,784 - -0.4 18,784 - -0.7 19,523 + -1.4 19,523 + -0.5 19,523 + -2.0 19,524 - -0.4 19,629 + -2.2
Or see this region's nucleotide sequence