Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19260

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS19245 and LRK55_RS19250 overlap by 7 nucleotidesLRK55_RS19250 and LRK55_RS19255 overlap by 17 nucleotidesLRK55_RS19255 and LRK55_RS19260 overlap by 4 nucleotidesLRK55_RS19260 and LRK55_RS19265 are separated by 67 nucleotidesLRK55_RS19265 and LRK55_RS19270 are separated by 15 nucleotides LRK55_RS19245: LRK55_RS19245 - TrbC family F-type conjugative pilus assembly protein, at 194,734 to 196,014 _RS19245 LRK55_RS19250: LRK55_RS19250 - S26 family signal peptidase, at 196,008 to 196,532 _RS19250 LRK55_RS19255: LRK55_RS19255 - hypothetical protein, at 196,516 to 196,899 _RS19255 LRK55_RS19260: LRK55_RS19260 - type IV secretion system protein TraC, at 196,896 to 199,325 _RS19260 LRK55_RS19265: LRK55_RS19265 - TraA family conjugative transfer protein, at 199,393 to 199,773 _RS19265 LRK55_RS19270: LRK55_RS19270 - TraV family lipoprotein, at 199,789 to 200,547 _RS19270 Position (kb) 196 197 198 199 200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 196.014 kb on + strandat 196.015 kb on - strandat 196.015 kb on - strandat 196.064 kb on - strand, within LRK55_RS19250at 196.108 kb on + strand, within LRK55_RS19250at 196.109 kb on - strand, within LRK55_RS19250at 196.126 kb on + strand, within LRK55_RS19250at 196.126 kb on + strand, within LRK55_RS19250at 196.127 kb on - strand, within LRK55_RS19250at 196.127 kb on - strand, within LRK55_RS19250at 196.152 kb on + strand, within LRK55_RS19250at 196.153 kb on - strand, within LRK55_RS19250at 196.196 kb on - strand, within LRK55_RS19250at 196.196 kb on - strand, within LRK55_RS19250at 196.262 kb on - strand, within LRK55_RS19250at 196.313 kb on - strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.318 kb on + strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.319 kb on - strand, within LRK55_RS19250at 196.366 kb on + strand, within LRK55_RS19250at 196.367 kb on - strand, within LRK55_RS19250at 196.381 kb on - strand, within LRK55_RS19250at 196.595 kb on + strand, within LRK55_RS19255at 196.595 kb on + strand, within LRK55_RS19255at 196.595 kb on + strand, within LRK55_RS19255at 196.601 kb on + strand, within LRK55_RS19255at 196.602 kb on - strand, within LRK55_RS19255at 196.608 kb on + strand, within LRK55_RS19255at 196.609 kb on - strand, within LRK55_RS19255at 196.623 kb on - strand, within LRK55_RS19255at 196.636 kb on + strand, within LRK55_RS19255at 196.987 kb on + strandat 196.987 kb on + strandat 196.987 kb on + strandat 196.987 kb on + strandat 196.988 kb on - strandat 196.988 kb on - strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.030 kb on + strandat 197.031 kb on - strandat 197.031 kb on - strandat 197.031 kb on - strandat 197.031 kb on - strandat 197.031 kb on - strandat 197.031 kb on - strandat 197.104 kb on + strandat 197.143 kb on + strand, within LRK55_RS19260at 197.144 kb on - strand, within LRK55_RS19260at 197.288 kb on + strand, within LRK55_RS19260at 197.288 kb on + strand, within LRK55_RS19260at 197.289 kb on - strand, within LRK55_RS19260at 197.315 kb on + strand, within LRK55_RS19260at 197.316 kb on - strand, within LRK55_RS19260at 197.423 kb on + strand, within LRK55_RS19260at 197.446 kb on + strand, within LRK55_RS19260at 197.446 kb on + strand, within LRK55_RS19260at 197.446 kb on + strand, within LRK55_RS19260at 197.446 kb on + strand, within LRK55_RS19260at 197.447 kb on - strand, within LRK55_RS19260at 197.447 kb on - strand, within LRK55_RS19260at 197.558 kb on - strand, within LRK55_RS19260at 197.558 kb on - strand, within LRK55_RS19260at 197.604 kb on + strand, within LRK55_RS19260at 197.604 kb on + strand, within LRK55_RS19260at 197.604 kb on + strand, within LRK55_RS19260at 197.604 kb on + strand, within LRK55_RS19260at 197.604 kb on + strand, within LRK55_RS19260at 197.605 kb on - strand, within LRK55_RS19260at 197.605 kb on - strand, within LRK55_RS19260at 197.857 kb on + strand, within LRK55_RS19260at 197.858 kb on - strand, within LRK55_RS19260at 197.891 kb on - strand, within LRK55_RS19260at 198.140 kb on - strand, within LRK55_RS19260at 198.305 kb on + strand, within LRK55_RS19260at 198.305 kb on + strand, within LRK55_RS19260at 198.337 kb on + strand, within LRK55_RS19260at 198.337 kb on + strand, within LRK55_RS19260at 198.337 kb on + strand, within LRK55_RS19260at 198.337 kb on + strand, within LRK55_RS19260at 198.338 kb on - strand, within LRK55_RS19260at 198.338 kb on - strand, within LRK55_RS19260at 198.338 kb on - strand, within LRK55_RS19260at 198.506 kb on + strand, within LRK55_RS19260at 198.507 kb on - strand, within LRK55_RS19260at 198.507 kb on - strand, within LRK55_RS19260at 198.517 kb on + strand, within LRK55_RS19260at 198.568 kb on + strand, within LRK55_RS19260at 198.568 kb on + strand, within LRK55_RS19260at 198.569 kb on - strand, within LRK55_RS19260at 198.569 kb on - strand, within LRK55_RS19260at 198.668 kb on - strand, within LRK55_RS19260at 198.752 kb on + strand, within LRK55_RS19260at 198.796 kb on + strand, within LRK55_RS19260at 198.797 kb on - strand, within LRK55_RS19260at 198.797 kb on - strand, within LRK55_RS19260at 198.797 kb on - strand, within LRK55_RS19260at 198.797 kb on - strand, within LRK55_RS19260at 198.797 kb on - strand, within LRK55_RS19260at 199.003 kb on + strand, within LRK55_RS19260at 199.004 kb on - strand, within LRK55_RS19260at 199.315 kb on + strandat 199.319 kb on + strandat 199.319 kb on + strandat 199.320 kb on - strandat 199.436 kb on + strand, within LRK55_RS19265at 199.436 kb on + strand, within LRK55_RS19265at 199.436 kb on + strand, within LRK55_RS19265at 199.437 kb on - strand, within LRK55_RS19265at 199.580 kb on + strand, within LRK55_RS19265at 199.580 kb on + strand, within LRK55_RS19265at 199.581 kb on - strand, within LRK55_RS19265at 199.581 kb on - strand, within LRK55_RS19265at 199.836 kb on + strandat 199.837 kb on - strandat 199.837 kb on - strandat 200.012 kb on + strand, within LRK55_RS19270at 200.078 kb on - strand, within LRK55_RS19270at 200.219 kb on + strand, within LRK55_RS19270at 200.220 kb on - strand, within LRK55_RS19270

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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196,014 + -1.4
196,015 - +0.4
196,015 - +0.1
196,064 - LRK55_RS19250 0.11 +1.1
196,108 + LRK55_RS19250 0.19 +0.7
196,109 - LRK55_RS19250 0.19 -0.2
196,126 + LRK55_RS19250 0.22 +2.0
196,126 + LRK55_RS19250 0.22 -0.5
196,127 - LRK55_RS19250 0.23 -0.9
196,127 - LRK55_RS19250 0.23 +0.3
196,152 + LRK55_RS19250 0.27 -3.2
196,153 - LRK55_RS19250 0.28 -2.2
196,196 - LRK55_RS19250 0.36 -0.9
196,196 - LRK55_RS19250 0.36 +0.9
196,262 - LRK55_RS19250 0.48 -0.5
196,313 - LRK55_RS19250 0.58 -0.8
196,318 + LRK55_RS19250 0.59 -0.3
196,318 + LRK55_RS19250 0.59 +1.6
196,318 + LRK55_RS19250 0.59 -1.8
196,318 + LRK55_RS19250 0.59 +0.5
196,318 + LRK55_RS19250 0.59 -2.2
196,318 + LRK55_RS19250 0.59 -0.2
196,318 + LRK55_RS19250 0.59 -0.2
196,318 + LRK55_RS19250 0.59 -0.5
196,318 + LRK55_RS19250 0.59 -2.5
196,318 + LRK55_RS19250 0.59 +0.7
196,318 + LRK55_RS19250 0.59 -1.5
196,318 + LRK55_RS19250 0.59 -3.5
196,319 - LRK55_RS19250 0.59 -0.4
196,319 - LRK55_RS19250 0.59 -3.2
196,319 - LRK55_RS19250 0.59 -2.2
196,319 - LRK55_RS19250 0.59 +0.6
196,319 - LRK55_RS19250 0.59 -1.7
196,319 - LRK55_RS19250 0.59 -0.7
196,319 - LRK55_RS19250 0.59 -2.9
196,319 - LRK55_RS19250 0.59 -0.1
196,319 - LRK55_RS19250 0.59 +1.5
196,319 - LRK55_RS19250 0.59 +1.3
196,319 - LRK55_RS19250 0.59 -1.2
196,319 - LRK55_RS19250 0.59 -1.4
196,319 - LRK55_RS19250 0.59 -1.1
196,319 - LRK55_RS19250 0.59 -2.1
196,319 - LRK55_RS19250 0.59 -2.0
196,366 + LRK55_RS19250 0.68 +0.5
196,367 - LRK55_RS19250 0.68 -0.4
196,381 - LRK55_RS19250 0.71 -2.1
196,595 + LRK55_RS19255 0.21 -1.4
196,595 + LRK55_RS19255 0.21 -0.7
196,595 + LRK55_RS19255 0.21 +1.3
196,601 + LRK55_RS19255 0.22 +1.1
196,602 - LRK55_RS19255 0.22 -1.1
196,608 + LRK55_RS19255 0.24 -1.5
196,609 - LRK55_RS19255 0.24 -2.0
196,623 - LRK55_RS19255 0.28 -0.2
196,636 + LRK55_RS19255 0.31 -2.5
196,987 + -0.8
196,987 + +0.7
196,987 + +0.0
196,987 + -1.7
196,988 - +0.6
196,988 - -2.4
197,030 + -1.9
197,030 + +0.6
197,030 + -0.3
197,030 + -0.4
197,030 + -0.0
197,030 + -1.5
197,030 + +0.1
197,030 + -1.5
197,030 + +0.1
197,030 + +1.5
197,031 - -1.0
197,031 - +0.0
197,031 - +0.2
197,031 - -0.9
197,031 - +0.4
197,031 - -3.5
197,104 + +0.8
197,143 + LRK55_RS19260 0.10 -3.4
197,144 - LRK55_RS19260 0.10 -0.4
197,288 + LRK55_RS19260 0.16 -1.5
197,288 + LRK55_RS19260 0.16 -2.2
197,289 - LRK55_RS19260 0.16 -0.7
197,315 + LRK55_RS19260 0.17 -0.0
197,316 - LRK55_RS19260 0.17 +2.0
197,423 + LRK55_RS19260 0.22 -0.2
197,446 + LRK55_RS19260 0.23 +0.7
197,446 + LRK55_RS19260 0.23 -0.2
197,446 + LRK55_RS19260 0.23 +0.1
197,446 + LRK55_RS19260 0.23 -2.8
197,447 - LRK55_RS19260 0.23 +0.3
197,447 - LRK55_RS19260 0.23 -2.5
197,558 - LRK55_RS19260 0.27 -0.5
197,558 - LRK55_RS19260 0.27 -0.2
197,604 + LRK55_RS19260 0.29 -4.1
197,604 + LRK55_RS19260 0.29 +1.2
197,604 + LRK55_RS19260 0.29 +0.6
197,604 + LRK55_RS19260 0.29 +0.3
197,604 + LRK55_RS19260 0.29 +0.3
197,605 - LRK55_RS19260 0.29 -1.1
197,605 - LRK55_RS19260 0.29 +0.1
197,857 + LRK55_RS19260 0.40 -0.1
197,858 - LRK55_RS19260 0.40 +0.3
197,891 - LRK55_RS19260 0.41 +0.1
198,140 - LRK55_RS19260 0.51 -0.9
198,305 + LRK55_RS19260 0.58 +1.0
198,305 + LRK55_RS19260 0.58 +0.3
198,337 + LRK55_RS19260 0.59 -0.1
198,337 + LRK55_RS19260 0.59 +1.5
198,337 + LRK55_RS19260 0.59 +0.5
198,337 + LRK55_RS19260 0.59 +0.0
198,338 - LRK55_RS19260 0.59 +1.6
198,338 - LRK55_RS19260 0.59 -0.9
198,338 - LRK55_RS19260 0.59 -0.5
198,506 + LRK55_RS19260 0.66 -0.0
198,507 - LRK55_RS19260 0.66 -0.4
198,507 - LRK55_RS19260 0.66 -0.5
198,517 + LRK55_RS19260 0.67 -0.4
198,568 + LRK55_RS19260 0.69 -0.1
198,568 + LRK55_RS19260 0.69 -0.6
198,569 - LRK55_RS19260 0.69 +0.0
198,569 - LRK55_RS19260 0.69 -1.7
198,668 - LRK55_RS19260 0.73 +0.6
198,752 + LRK55_RS19260 0.76 +1.9
198,796 + LRK55_RS19260 0.78 -0.2
198,797 - LRK55_RS19260 0.78 +0.4
198,797 - LRK55_RS19260 0.78 -0.3
198,797 - LRK55_RS19260 0.78 +1.0
198,797 - LRK55_RS19260 0.78 -2.1
198,797 - LRK55_RS19260 0.78 -2.9
199,003 + LRK55_RS19260 0.87 +0.9
199,004 - LRK55_RS19260 0.87 +1.3
199,315 + -1.0
199,319 + -0.7
199,319 + +0.3
199,320 - +3.1
199,436 + LRK55_RS19265 0.11 -4.0
199,436 + LRK55_RS19265 0.11 -0.1
199,436 + LRK55_RS19265 0.11 -1.2
199,437 - LRK55_RS19265 0.12 +1.0
199,580 + LRK55_RS19265 0.49 +0.1
199,580 + LRK55_RS19265 0.49 -3.4
199,581 - LRK55_RS19265 0.49 +0.3
199,581 - LRK55_RS19265 0.49 -0.0
199,836 + +0.0
199,837 - -0.2
199,837 - -0.4
200,012 + LRK55_RS19270 0.29 -0.1
200,078 - LRK55_RS19270 0.38 +0.7
200,219 + LRK55_RS19270 0.57 -0.4
200,220 - LRK55_RS19270 0.57 +0.8

Or see this region's nucleotide sequence