Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18890

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
117,315	+		LRK55_RS18885	0.31	+0.2
117,315	+		LRK55_RS18885	0.31	+0.4
117,315	+		LRK55_RS18885	0.31	-0.9
117,315	+		LRK55_RS18885	0.31	-0.8
117,315	+		LRK55_RS18885	0.31	-0.4
117,315	+		LRK55_RS18885	0.31	+0.6
117,315	+		LRK55_RS18885	0.31	+1.6
117,316	-		LRK55_RS18885	0.31	+0.1
117,316	-		LRK55_RS18885	0.31	-0.8
117,316	-		LRK55_RS18885	0.31	+0.7
117,316	-		LRK55_RS18885	0.31	+0.1
117,316	-		LRK55_RS18885	0.31	+3.3
117,316	-		LRK55_RS18885	0.31	+0.5
117,316	-		LRK55_RS18885	0.31	-0.1
117,331	+		LRK55_RS18885	0.32	-2.1
117,331	+		LRK55_RS18885	0.32	+0.0
117,331	+		LRK55_RS18885	0.32	+0.7
117,331	+		LRK55_RS18885	0.32	+0.1
117,332	-		LRK55_RS18885	0.32	+0.0
117,332	-		LRK55_RS18885	0.32	-1.5
117,332	-		LRK55_RS18885	0.32	-0.1
117,417	+		LRK55_RS18885	0.40	+0.5
117,418	-		LRK55_RS18885	0.40	-1.9
117,496	+		LRK55_RS18885	0.46	+1.0
117,496	+		LRK55_RS18885	0.46	-3.2
117,496	+		LRK55_RS18885	0.46	-1.5
117,496	+		LRK55_RS18885	0.46	+0.4
117,529	+		LRK55_RS18885	0.49	+0.3
117,530	-		LRK55_RS18885	0.49	-2.8
117,530	-		LRK55_RS18885	0.49	-0.0
117,582	+		LRK55_RS18885	0.54	-0.4
117,582	+		LRK55_RS18885	0.54	-1.0
117,582	+		LRK55_RS18885	0.54	-0.3
117,582	+		LRK55_RS18885	0.54	-0.7
117,582	+		LRK55_RS18885	0.54	+0.1
117,582	+		LRK55_RS18885	0.54	-0.4
117,582	+		LRK55_RS18885	0.54	+0.2
117,582	+		LRK55_RS18885	0.54	-0.1
117,582	+		LRK55_RS18885	0.54	-0.4
117,582	+		LRK55_RS18885	0.54	+0.6
117,582	+		LRK55_RS18885	0.54	+0.6
117,583	-		LRK55_RS18885	0.54	-0.2
117,583	-		LRK55_RS18885	0.54	-0.1
117,583	-		LRK55_RS18885	0.54	-2.8
117,583	-		LRK55_RS18885	0.54	+0.1
117,610	+		LRK55_RS18885	0.56	+0.0
117,610	+		LRK55_RS18885	0.56	+0.6
117,693	+		LRK55_RS18885	0.63	+0.5
117,694	-		LRK55_RS18885	0.63	+0.0
117,694	-		LRK55_RS18885	0.63	+1.8
117,700	+		LRK55_RS18885	0.64	+0.3
117,700	+		LRK55_RS18885	0.64	+0.1
117,704	+		LRK55_RS18885	0.64	-0.2
117,704	+		LRK55_RS18885	0.64	-0.7
117,704	+		LRK55_RS18885	0.64	+0.5
117,704	+		LRK55_RS18885	0.64	+1.1
117,704	+		LRK55_RS18885	0.64	-1.1
117,705	-		LRK55_RS18885	0.64	-0.5
117,705	-		LRK55_RS18885	0.64	-0.4
117,705	-		LRK55_RS18885	0.64	+0.3
117,705	-		LRK55_RS18885	0.64	-1.4
117,815	+		LRK55_RS18885	0.74	+1.7
117,815	+		LRK55_RS18885	0.74	-3.0
117,815	+		LRK55_RS18885	0.74	+2.2
117,815	+		LRK55_RS18885	0.74	-0.1
117,815	+		LRK55_RS18885	0.74	+0.0
117,815	+		LRK55_RS18885	0.74	-3.7
117,816	-		LRK55_RS18885	0.74	+0.5
117,816	-		LRK55_RS18885	0.74	-0.7
117,845	-		LRK55_RS18885	0.76	+0.2
117,845	-		LRK55_RS18885	0.76	+0.1
117,891	+		LRK55_RS18885	0.80	-1.5
117,891	+		LRK55_RS18885	0.80	+0.3
117,891	+		LRK55_RS18885	0.80	+0.5
117,892	-		LRK55_RS18885	0.80	+0.7
117,892	-		LRK55_RS18885	0.80	-3.8
117,892	-		LRK55_RS18885	0.80	-1.0
117,892	-		LRK55_RS18885	0.80	-1.5
117,892	-		LRK55_RS18885	0.80	-1.2
117,935	-		LRK55_RS18885	0.84	-0.5
117,947	+		LRK55_RS18885	0.85	-2.2
117,947	+		LRK55_RS18885	0.85	-0.3
117,947	+		LRK55_RS18885	0.85	+0.0
117,947	+		LRK55_RS18885	0.85	-1.3
117,947	+		LRK55_RS18885	0.85	-0.8
117,947	+		LRK55_RS18885	0.85	-0.2
117,947	+		LRK55_RS18885	0.85	-0.3
117,947	+		LRK55_RS18885	0.85	-1.1
117,947	+		LRK55_RS18885	0.85	+0.4
117,947	+		LRK55_RS18885	0.85	+0.5
117,947	+		LRK55_RS18885	0.85	-0.9
117,947	+		LRK55_RS18885	0.85	+0.7
117,947	+		LRK55_RS18885	0.85	-1.7
117,947	+		LRK55_RS18885	0.85	+0.5
117,947	+		LRK55_RS18885	0.85	-0.9
117,947	+		LRK55_RS18885	0.85	+0.1
117,947	+		LRK55_RS18885	0.85	-0.7
117,948	-		LRK55_RS18885	0.85	-0.6
117,948	-		LRK55_RS18885	0.85	-0.5
117,948	-		LRK55_RS18885	0.85	-0.5
117,948	-		LRK55_RS18885	0.85	+0.2
117,948	-		LRK55_RS18885	0.85	+1.3
117,948	-		LRK55_RS18885	0.85	-0.1
117,948	-		LRK55_RS18885	0.85	+0.2
117,948	-		LRK55_RS18885	0.85	+0.2
117,948	-		LRK55_RS18885	0.85	+0.4
117,948	-		LRK55_RS18885	0.85	-0.4
117,948	-		LRK55_RS18885	0.85	-1.2
117,948	-		LRK55_RS18885	0.85	+1.5
117,964	+		LRK55_RS18885	0.87	-0.2
117,965	-		LRK55_RS18885	0.87	-2.2
118,104	+				+0.2
118,104	+				-0.8
118,104	+				+0.2
118,105	-				-0.4
118,105	-				-1.7
118,145	+				-0.0
118,146	-				+0.1
118,178	-				+1.0
118,212	+				+0.1
118,212	+				-1.4
118,226	+				+1.6
118,235	-				-1.7
118,236	+				+0.5
118,236	+				-0.1
118,236	+				-0.2
118,236	+				-2.9
118,237	-				+0.7
118,237	-				+0.5
118,242	+				-0.6
118,243	-				+1.2
118,243	-				-0.2
118,315	+				+1.0
118,316	-				-1.4
118,316	-				-0.5
118,386	-				-1.2
118,386	-				-1.0
118,386	-				+1.9
118,386	-				-1.1
118,386	-				-2.2
118,412	-		LRK55_RS18890	0.12	-0.2
118,412	-		LRK55_RS18890	0.12	-0.4
118,412	-		LRK55_RS18890	0.12	+0.1
118,412	-		LRK55_RS18890	0.12	+0.7
118,412	-		LRK55_RS18890	0.12	-0.0
118,431	+		LRK55_RS18890	0.14	+0.5
118,431	+		LRK55_RS18890	0.14	+2.9
118,431	+		LRK55_RS18890	0.14	+0.5
118,431	+		LRK55_RS18890	0.14	-1.4
118,431	+		LRK55_RS18890	0.14	-0.2
118,431	+		LRK55_RS18890	0.14	-0.2
118,431	+		LRK55_RS18890	0.14	-0.1
118,632	+		LRK55_RS18890	0.34	+0.1
118,632	+		LRK55_RS18890	0.34	-0.7
118,632	+		LRK55_RS18890	0.34	+1.5
118,632	+		LRK55_RS18890	0.34	-2.7
118,632	+		LRK55_RS18890	0.34	+0.1
118,632	+		LRK55_RS18890	0.34	-0.4
118,632	+		LRK55_RS18890	0.34	+1.8
118,632	+		LRK55_RS18890	0.34	-3.5
118,632	+		LRK55_RS18890	0.34	+0.5
118,632	+		LRK55_RS18890	0.34	+0.2
118,632	+		LRK55_RS18890	0.34	-0.8
118,632	+		LRK55_RS18890	0.34	-0.2
118,632	+		LRK55_RS18890	0.34	-0.0
118,632	+		LRK55_RS18890	0.34	+0.1
118,632	+		LRK55_RS18890	0.34	-2.5
118,632	+		LRK55_RS18890	0.34	+0.4
118,632	+		LRK55_RS18890	0.34	-1.0
118,633	-		LRK55_RS18890	0.34	-0.8
118,633	-		LRK55_RS18890	0.34	+2.2
118,633	-		LRK55_RS18890	0.34	-2.1
118,633	-		LRK55_RS18890	0.34	+0.2
118,633	-		LRK55_RS18890	0.34	+0.1
118,633	-		LRK55_RS18890	0.34	-0.0
118,633	-		LRK55_RS18890	0.34	-1.0
118,633	-		LRK55_RS18890	0.34	-0.9
118,633	-		LRK55_RS18890	0.34	-0.4
118,633	-		LRK55_RS18890	0.34	+1.0
118,633	-		LRK55_RS18890	0.34	+0.1
118,633	-		LRK55_RS18890	0.34	+1.4
118,633	-		LRK55_RS18890	0.34	+0.5
118,633	-		LRK55_RS18890	0.34	+1.0
118,633	-		LRK55_RS18890	0.34	-0.1
118,633	-		LRK55_RS18890	0.34	+0.1
118,633	-		LRK55_RS18890	0.34	-0.2
118,761	+		LRK55_RS18890	0.47	-0.3
118,761	+		LRK55_RS18890	0.47	+0.3
118,761	+		LRK55_RS18890	0.47	-2.8
118,761	+		LRK55_RS18890	0.47	-0.5
118,762	-		LRK55_RS18890	0.47	-1.2
118,762	-		LRK55_RS18890	0.47	+2.0
118,762	-		LRK55_RS18890	0.47	+0.7
118,762	-		LRK55_RS18890	0.47	-3.5
118,762	-		LRK55_RS18890	0.47	-0.7
118,762	-		LRK55_RS18890	0.47	-0.2
118,762	-		LRK55_RS18890	0.47	+0.6
118,762	-		LRK55_RS18890	0.47	+0.0
118,813	+		LRK55_RS18890	0.52	+0.8
118,813	+		LRK55_RS18890	0.52	-1.3
118,814	-		LRK55_RS18890	0.52	-0.7
118,814	-		LRK55_RS18890	0.52	+0.5
118,814	-		LRK55_RS18890	0.52	+0.4
118,861	-		LRK55_RS18890	0.57	-0.1
118,861	-		LRK55_RS18890	0.57	-0.8
118,861	-		LRK55_RS18890	0.57	-1.3
118,897	+		LRK55_RS18890	0.60	-0.4
118,898	-		LRK55_RS18890	0.60	-0.4
118,899	+		LRK55_RS18890	0.60	-0.9
118,899	+		LRK55_RS18890	0.60	-0.1
118,899	+		LRK55_RS18890	0.60	+0.5
118,899	+		LRK55_RS18890	0.60	-1.9
118,900	-		LRK55_RS18890	0.60	+0.6
118,900	-		LRK55_RS18890	0.60	-2.0
118,900	-		LRK55_RS18890	0.60	-0.1
118,900	-		LRK55_RS18890	0.60	-1.6
119,094	+		LRK55_RS18890	0.79	-0.0
119,094	+		LRK55_RS18890	0.79	-0.0
119,095	-		LRK55_RS18890	0.80	-0.1
119,095	-		LRK55_RS18890	0.80	-0.3
119,095	-		LRK55_RS18890	0.80	-1.7
119,095	-		LRK55_RS18890	0.80	-0.3
119,095	-		LRK55_RS18890	0.80	+0.6
119,110	+		LRK55_RS18890	0.81	-0.1
119,239	-				+1.0
119,300	+				-0.4
119,301	-				-0.2
119,301	-				-0.1
119,318	+				-0.5
119,318	+				-0.3
119,318	+				+0.9
119,318	+				-0.0
119,319	-				+0.9
119,319	-				-2.1
119,319	-				-0.1
119,319	-				+0.1
119,449	+				-0.4
119,449	+				+1.2
119,449	+				+1.9
119,449	+				-0.5
119,450	-				+1.0
119,450	-				+0.5
119,484	+				+0.4
119,484	+				+0.0
119,484	+				-0.7
119,485	-				-1.1
119,485	-				-0.6
119,485	-				-0.7
119,538	-		LRK55_RS18895	0.18	+0.0
119,554	+		LRK55_RS18895	0.23	+0.3
119,554	+		LRK55_RS18895	0.23	+2.1
119,554	+		LRK55_RS18895	0.23	+0.5
119,555	-		LRK55_RS18895	0.24	+1.7
119,555	-		LRK55_RS18895	0.24	-0.6
119,555	-		LRK55_RS18895	0.24	-0.1
119,555	-		LRK55_RS18895	0.24	-0.7
119,583	+		LRK55_RS18895	0.33	+0.5
119,584	-		LRK55_RS18895	0.33	+1.1
119,584	-		LRK55_RS18895	0.33	+0.9
119,584	-		LRK55_RS18895	0.33	-1.1
119,584	-		LRK55_RS18895	0.33	+0.4
119,662	+		LRK55_RS18895	0.59	-1.0
119,662	+		LRK55_RS18895	0.59	-0.5
119,662	+		LRK55_RS18895	0.59	-0.7
119,714	-		LRK55_RS18895	0.76	-0.0
119,714	-		LRK55_RS18895	0.76	+0.3
119,785	+				-2.1
119,785	+				+0.2
119,785	+				+0.4
119,785	+				+0.4
119,786	-				-0.2
119,786	-				-0.5
119,786	-				+0.0
119,786	-				+1.9
119,786	-				-0.2
119,799	+				-0.4
119,870	+				+0.3
119,870	+				+0.9
119,870	+				-1.5
119,870	+				-0.6
119,870	+				+0.6
119,871	-				+0.9
119,881	+				+2.1
119,881	+				-0.2
119,881	+				-0.1
119,881	+				-0.5
119,881	+				+0.2
119,881	+				+1.3
119,881	+				-1.1
119,881	+				-2.8
119,881	+				+0.5
119,882	-				-1.5
119,882	-				-2.2
119,882	-				+0.3
119,882	-				+0.5
119,882	-				-0.2
119,885	+				+0.4
119,885	+				+1.6
119,885	+				-2.1
119,885	+				-2.2
119,885	+				-0.9
119,885	+				+0.5
119,885	+				-0.3
119,885	+				+1.0
119,886	-				-1.9
119,886	-				-0.4
119,886	-				+0.2
119,886	-				-1.6
119,886	-				-3.3
119,886	-				-1.7
119,886	-				+0.3
119,886	-				-0.6
119,886	-				+1.9
119,889	+				-0.0
119,889	+				-0.3
119,889	+				-0.5
119,889	+				+0.2
119,890	-				+0.5
119,890	-				+0.7
119,890	-				-0.6
119,946	-				-0.1
119,946	-				-0.2
120,048	+				+1.0
120,048	+				+0.7
120,048	+				+1.0
120,049	-				+0.9
120,055	-				-2.0
120,068	+				+1.0
120,069	-				-2.7
120,089	+				-0.1
120,090	-				+1.0
120,096	+				-0.5
120,096	+				-0.7
120,102	+				+0.3
120,102	+				-1.4
120,102	+				-0.1
120,103	-				-0.7
120,103	-				+0.3
120,106	+				+1.0
120,106	+				-1.2
120,106	+				-0.9
120,106	+				+1.5
120,106	+				+1.3
120,106	+				+0.7
120,106	+				+0.4
120,106	+				-1.4
120,106	+				-2.4
120,106	+				-0.2
120,107	-				-0.9
120,107	-				+0.1
120,107	-				-1.4
120,107	-				-1.4
120,107	-				-0.3
120,107	-				-1.5
120,107	-				-0.2
120,107	-				+0.4
120,144	+				-1.0
120,144	+				-0.0
120,144	+				-0.5
120,145	-				-0.1
120,145	-				-1.1
120,260	-				-0.2