Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18740 and LRK55_RS18745 overlap by 4 nucleotides LRK55_RS18745 and LRK55_RS18750 are separated by 73 nucleotides LRK55_RS18750 and LRK55_RS18755 are separated by 108 nucleotides
LRK55_RS18740: LRK55_RS18740 - efflux RND transporter periplasmic adaptor subunit, at 87,777 to 88,874
_RS18740
LRK55_RS18745: LRK55_RS18745 - TolC family protein, at 88,871 to 90,034
_RS18745
LRK55_RS18750: LRK55_RS18750 - hypothetical protein, at 90,108 to 90,608
_RS18750
LRK55_RS18755: LRK55_RS18755 - arsenate reductase (glutaredoxin), at 90,717 to 91,154
_RS18755
Position (kb) 88
89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.973 kb on - strand, within LRK55_RS18740 at 87.973 kb on - strand, within LRK55_RS18740 at 88.409 kb on - strand, within LRK55_RS18740 at 88.409 kb on - strand, within LRK55_RS18740 at 88.653 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.739 kb on + strand, within LRK55_RS18740 at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 89.078 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.186 kb on + strand, within LRK55_RS18745 at 89.186 kb on + strand, within LRK55_RS18745 at 89.187 kb on - strand, within LRK55_RS18745 at 89.187 kb on - strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.794 kb on - strand, within LRK55_RS18745 at 89.794 kb on - strand, within LRK55_RS18745 at 89.937 kb on + strand at 89.937 kb on + strand at 89.937 kb on + strand at 89.937 kb on + strand at 89.937 kb on + strand at 89.937 kb on + strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand at 90.119 kb on + strand at 90.119 kb on + strand at 90.120 kb on - strand at 90.130 kb on - strand at 90.164 kb on + strand, within LRK55_RS18750 at 90.165 kb on - strand, within LRK55_RS18750 at 90.181 kb on + strand, within LRK55_RS18750 at 90.181 kb on + strand, within LRK55_RS18750 at 90.181 kb on + strand, within LRK55_RS18750 at 90.181 kb on + strand, within LRK55_RS18750 at 90.181 kb on + strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.182 kb on - strand, within LRK55_RS18750 at 90.470 kb on + strand, within LRK55_RS18750 at 90.470 kb on + strand, within LRK55_RS18750 at 90.470 kb on + strand, within LRK55_RS18750 at 90.470 kb on + strand, within LRK55_RS18750 at 90.470 kb on + strand, within LRK55_RS18750 at 90.471 kb on - strand, within LRK55_RS18750 at 90.471 kb on - strand, within LRK55_RS18750 at 90.471 kb on - strand, within LRK55_RS18750 at 90.471 kb on - strand, within LRK55_RS18750 at 90.563 kb on + strand at 90.563 kb on + strand at 90.563 kb on + strand at 90.563 kb on + strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.564 kb on - strand at 90.584 kb on + strand at 90.584 kb on + strand at 90.585 kb on - strand at 90.585 kb on - strand at 90.639 kb on + strand at 90.639 kb on + strand at 90.639 kb on + strand at 90.640 kb on - strand at 90.640 kb on - strand at 90.649 kb on - strand at 90.660 kb on + strand at 90.660 kb on + strand at 90.661 kb on - strand at 90.661 kb on - strand at 90.661 kb on - strand at 90.667 kb on + strand at 90.668 kb on - strand at 90.763 kb on - strand, within LRK55_RS18755 at 90.822 kb on + strand, within LRK55_RS18755 at 90.822 kb on + strand, within LRK55_RS18755 at 90.822 kb on + strand, within LRK55_RS18755 at 90.822 kb on + strand, within LRK55_RS18755 at 91.016 kb on + strand, within LRK55_RS18755 at 91.016 kb on + strand, within LRK55_RS18755 at 91.017 kb on - strand, within LRK55_RS18755 at 91.026 kb on + strand, within LRK55_RS18755 at 91.027 kb on - strand, within LRK55_RS18755
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 87,972 + LRK55_RS18740 0.18 -1.3 87,972 + LRK55_RS18740 0.18 -2.6 87,972 + LRK55_RS18740 0.18 -0.8 87,972 + LRK55_RS18740 0.18 +0.1 87,973 - LRK55_RS18740 0.18 -0.3 87,973 - LRK55_RS18740 0.18 -2.5 88,409 - LRK55_RS18740 0.58 +0.2 88,409 - LRK55_RS18740 0.58 -1.0 88,653 + LRK55_RS18740 0.80 +0.5 88,663 + LRK55_RS18740 0.81 +0.0 88,663 + LRK55_RS18740 0.81 +0.1 88,663 + LRK55_RS18740 0.81 +0.4 88,739 + LRK55_RS18740 0.88 -2.2 88,868 + -0.0 88,868 + +0.0 88,868 + +0.9 88,868 + +1.0 88,868 + -2.1 88,869 - -0.3 88,869 - +0.6 88,869 - -0.0 88,869 - -0.3 88,869 - +0.8 88,869 - +1.6 88,869 - +0.0 88,869 - +0.1 89,078 + LRK55_RS18745 0.18 +0.1 89,171 + LRK55_RS18745 0.26 -2.7 89,171 + LRK55_RS18745 0.26 +0.6 89,171 + LRK55_RS18745 0.26 -1.1 89,186 + LRK55_RS18745 0.27 -0.1 89,186 + LRK55_RS18745 0.27 -1.4 89,187 - LRK55_RS18745 0.27 -0.5 89,187 - LRK55_RS18745 0.27 -0.9 89,793 + LRK55_RS18745 0.79 -1.2 89,793 + LRK55_RS18745 0.79 +0.2 89,793 + LRK55_RS18745 0.79 +0.4 89,793 + LRK55_RS18745 0.79 +0.0 89,793 + LRK55_RS18745 0.79 +0.7 89,794 - LRK55_RS18745 0.79 -2.4 89,794 - LRK55_RS18745 0.79 -0.9 89,937 + -1.2 89,937 + +0.5 89,937 + +0.2 89,937 + +0.6 89,937 + +0.2 89,937 + -0.6 89,938 - +0.1 89,938 - +0.3 89,938 - +0.1 89,938 - +0.1 89,938 - +1.2 89,938 - -0.7 89,938 - -0.2 90,119 + -0.6 90,119 + +0.2 90,120 - -1.5 90,130 - -0.6 90,164 + LRK55_RS18750 0.11 +0.1 90,165 - LRK55_RS18750 0.11 +0.0 90,181 + LRK55_RS18750 0.15 +0.4 90,181 + LRK55_RS18750 0.15 -1.0 90,181 + LRK55_RS18750 0.15 -0.2 90,181 + LRK55_RS18750 0.15 -0.9 90,181 + LRK55_RS18750 0.15 +1.3 90,182 - LRK55_RS18750 0.15 -0.5 90,182 - LRK55_RS18750 0.15 -1.6 90,182 - LRK55_RS18750 0.15 +2.4 90,182 - LRK55_RS18750 0.15 -0.3 90,182 - LRK55_RS18750 0.15 -0.6 90,182 - LRK55_RS18750 0.15 +0.3 90,182 - LRK55_RS18750 0.15 -0.2 90,182 - LRK55_RS18750 0.15 -0.1 90,470 + LRK55_RS18750 0.72 +0.2 90,470 + LRK55_RS18750 0.72 -0.3 90,470 + LRK55_RS18750 0.72 -0.1 90,470 + LRK55_RS18750 0.72 +1.0 90,470 + LRK55_RS18750 0.72 -0.1 90,471 - LRK55_RS18750 0.72 +0.1 90,471 - LRK55_RS18750 0.72 -0.1 90,471 - LRK55_RS18750 0.72 +0.0 90,471 - LRK55_RS18750 0.72 +0.1 90,563 + -0.3 90,563 + +1.6 90,563 + +0.4 90,563 + +1.3 90,564 - +0.0 90,564 - +0.8 90,564 - -0.2 90,564 - -0.9 90,564 - -2.5 90,564 - +0.8 90,564 - +0.4 90,564 - -0.1 90,584 + +0.1 90,584 + +0.1 90,585 - -2.0 90,585 - +0.1 90,639 + +1.0 90,639 + +0.7 90,639 + -0.7 90,640 - -2.4 90,640 - -1.4 90,649 - +0.6 90,660 + -0.4 90,660 + -1.4 90,661 - +1.3 90,661 - +1.4 90,661 - -0.7 90,667 + +1.1 90,668 - -0.3 90,763 - LRK55_RS18755 0.11 -0.9 90,822 + LRK55_RS18755 0.24 -0.2 90,822 + LRK55_RS18755 0.24 +2.0 90,822 + LRK55_RS18755 0.24 +0.5 90,822 + LRK55_RS18755 0.24 +1.3 91,016 + LRK55_RS18755 0.68 +0.1 91,016 + LRK55_RS18755 0.68 -0.5 91,017 - LRK55_RS18755 0.68 -0.2 91,026 + LRK55_RS18755 0.71 +1.1 91,027 - LRK55_RS18755 0.71 -1.4
Or see this region's nucleotide sequence