Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18220

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,952,035	+		LRK55_RS18215	0.38	-0.6
3,952,035	+		LRK55_RS18215	0.38	+0.6
3,952,035	+		LRK55_RS18215	0.38	+0.3
3,952,035	+		LRK55_RS18215	0.38	-0.4
3,952,035	+		LRK55_RS18215	0.38	-0.5
3,952,035	+		LRK55_RS18215	0.38	+0.8
3,952,035	+		LRK55_RS18215	0.38	-0.1
3,952,035	+		LRK55_RS18215	0.38	+0.3
3,952,035	+		LRK55_RS18215	0.38	+0.9
3,952,036	-		LRK55_RS18215	0.38	-1.1
3,952,036	-		LRK55_RS18215	0.38	-2.5
3,952,036	-		LRK55_RS18215	0.38	+0.1
3,952,111	-		LRK55_RS18215	0.47	+0.5
3,952,290	-		LRK55_RS18215	0.68	-0.4
3,952,593	+				-0.2
3,952,609	+				+0.1
3,952,609	+				+0.4
3,952,610	-				-1.7
3,952,610	-				-3.3
3,952,610	-				-0.3
3,952,621	+				-0.7
3,952,621	+				-1.5
3,952,621	+				+1.6
3,952,621	+				+0.3
3,952,621	+				+0.1
3,952,621	+				-1.7
3,952,621	+				-1.6
3,952,621	+				-1.5
3,952,622	-				-2.4
3,952,622	-				+0.2
3,952,622	-				+1.5
3,952,622	-				+0.9
3,952,622	-				-1.8
3,952,622	-				+0.4
3,952,622	-				+0.4
3,952,622	-				+3.3
3,952,622	-				+0.5
3,952,622	-				-0.4
3,952,622	-				-0.6
3,952,622	-				-2.1
3,952,622	-				+0.9
3,952,622	-				-0.5
3,952,637	+				+0.4
3,952,637	+				-3.4
3,952,637	+				+0.1
3,952,637	+				-3.1
3,952,637	+				-0.0
3,952,637	+				+0.8
3,952,637	+				-1.3
3,952,637	+				-2.4
3,952,637	+				-2.0
3,952,637	+				+0.1
3,952,637	+				-0.4
3,952,637	+				+0.1
3,952,637	+				-1.8
3,952,637	+				-3.2
3,952,637	+				+1.5
3,952,637	+				+1.9
3,952,637	+				-0.2
3,952,637	+				+0.2
3,952,637	+				-0.4
3,952,637	+				-0.5
3,952,638	-				+0.3
3,952,638	-				-0.3
3,952,638	-				-0.1
3,952,638	-				+0.0
3,952,638	-				+1.0
3,952,638	-				+1.0
3,952,638	-				-1.6
3,952,638	-				+0.8
3,952,638	-				-0.1
3,952,638	-				+0.5
3,952,638	-				+0.5
3,952,638	-				-0.2
3,952,638	-				-0.4
3,952,638	-				-1.3
3,952,638	-				+0.3
3,952,638	-				+1.1
3,952,665	-				+0.3
3,952,708	+				-0.8
3,952,708	+				-0.5
3,952,709	-				+1.0
3,952,713	-				-2.0
3,952,716	+				+0.4
3,952,717	-				-1.9
3,952,725	-				-0.1
3,952,725	-				+1.2
3,952,729	+				-1.4
3,952,729	+				-1.3
3,952,729	+				-0.5
3,952,729	+				+0.2
3,952,729	+				-0.8
3,952,729	+				+0.9
3,952,729	+				+1.0
3,952,729	+				+0.4
3,952,729	+				+1.5
3,952,729	+				+0.0
3,952,729	+				+1.2
3,952,729	+				-1.9
3,952,729	+				+1.1
3,952,729	+				+0.3
3,952,729	+				+0.1
3,952,729	+				-0.0
3,952,729	+				-1.5
3,952,729	+				+0.0
3,952,730	-				-0.3
3,952,730	-				-1.9
3,952,730	-				-0.3
3,952,730	-				+0.5
3,952,730	-				+1.5
3,952,730	-				-2.5
3,952,730	-				-1.0
3,952,730	-				-0.5
3,952,730	-				+0.8
3,952,730	-				+0.5
3,952,730	-				-0.7
3,952,730	-				-2.0
3,952,730	-				+0.9
3,952,730	-				-0.2
3,952,730	-				+1.3
3,952,730	-				-2.5
3,952,813	+				-1.0
3,952,813	+				-1.0
3,952,813	+				-3.1
3,952,813	+				+0.5
3,952,813	+				-2.9
3,952,813	+				+0.1
3,952,813	+				-3.7
3,952,813	+				-0.0
3,952,813	+				-0.9
3,952,813	+				-1.5
3,952,813	+				+1.3
3,952,813	+				-1.6
3,952,813	+				-0.2
3,952,813	+				+0.5
3,952,813	+				-0.9
3,952,813	+				-0.2
3,952,813	+				-0.1
3,952,813	+				+0.8
3,952,813	+				+1.0
3,952,813	+				-0.8
3,952,813	+				-0.3
3,952,814	-				-3.2
3,952,814	-				+1.0
3,952,814	-				-1.0
3,952,814	-				-0.1
3,952,814	-				+1.7
3,952,814	-				-0.7
3,952,814	-				+0.5
3,952,814	-				-0.7
3,952,814	-				+0.8
3,952,814	-				+0.7
3,952,814	-				+0.3
3,952,814	-				-0.8
3,952,814	-				+0.1
3,952,814	-				-3.0
3,952,814	-				+0.5
3,952,814	-				-1.5
3,952,817	+				-1.2
3,952,817	+				-0.5
3,952,817	+				-1.6
3,952,817	+				-0.1
3,952,817	+				+0.2
3,952,817	+				-1.1
3,952,817	+				-2.0
3,952,818	-				-2.3
3,952,818	-				+0.3
3,952,818	-				+0.6
3,952,818	-				+1.4
3,952,818	-				+0.2
3,952,818	-				+0.7
3,952,818	-				-0.9
3,952,818	-				+1.4
3,952,818	-				+0.9
3,952,818	-				-0.7
3,952,818	-				+1.0
3,952,829	+				-0.3
3,952,829	+				-1.3
3,952,829	+				-1.1
3,952,829	+				-3.0
3,952,829	+				+0.2
3,952,829	+				+0.3
3,952,829	+				+0.6
3,952,829	+				-1.0
3,952,830	-				-1.1
3,952,830	-				+0.7
3,952,830	-				-0.3
3,952,830	-				-0.0
3,952,849	+				-2.4
3,952,849	+				-0.6
3,952,849	+				-0.8
3,952,849	+				-0.9
3,952,850	-				-2.0
3,952,850	-				+1.3
3,952,933	+		LRK55_RS18220	0.26	-0.5
3,952,933	+		LRK55_RS18220	0.26	-0.2
3,952,933	+		LRK55_RS18220	0.26	-1.3
3,952,934	-		LRK55_RS18220	0.27	+0.8
3,952,934	-		LRK55_RS18220	0.27	+0.5
3,952,934	-		LRK55_RS18220	0.27	+0.5
3,952,934	-		LRK55_RS18220	0.27	+0.4
3,952,979	+		LRK55_RS18220	0.54	-0.8
3,952,979	+		LRK55_RS18220	0.54	-0.6
3,952,979	+		LRK55_RS18220	0.54	-0.1
3,952,980	-		LRK55_RS18220	0.54	-1.1
3,952,980	-		LRK55_RS18220	0.54	+0.0
3,952,980	-		LRK55_RS18220	0.54	+0.3
3,952,980	-		LRK55_RS18220	0.54	-0.6
3,952,980	-		LRK55_RS18220	0.54	-2.9
3,952,980	-		LRK55_RS18220	0.54	+0.5
3,953,081	-				-0.5
3,953,081	-				+0.2
3,953,138	+		LRK55_RS18225	0.10	-2.8
3,953,138	+		LRK55_RS18225	0.10	+0.0
3,953,138	+		LRK55_RS18225	0.10	+0.2
3,953,138	+		LRK55_RS18225	0.10	-1.1
3,953,138	+		LRK55_RS18225	0.10	+1.3
3,953,139	-		LRK55_RS18225	0.10	-2.0
3,953,139	-		LRK55_RS18225	0.10	-0.8
3,953,139	-		LRK55_RS18225	0.10	-0.7
3,953,139	-		LRK55_RS18225	0.10	-1.0
3,953,139	-		LRK55_RS18225	0.10	+0.9
3,953,139	-		LRK55_RS18225	0.10	-2.1
3,953,139	-		LRK55_RS18225	0.10	+1.0
3,953,151	+		LRK55_RS18225	0.12	-0.2
3,953,180	-		LRK55_RS18225	0.17	-0.9
3,953,193	+		LRK55_RS18225	0.19	-2.6
3,953,193	+		LRK55_RS18225	0.19	+1.6
3,953,193	+		LRK55_RS18225	0.19	-0.4
3,953,193	+		LRK55_RS18225	0.19	-0.1
3,953,217	+		LRK55_RS18225	0.23	+0.1
3,953,217	+		LRK55_RS18225	0.23	+0.7
3,953,256	+		LRK55_RS18225	0.30	-2.3
3,953,256	+		LRK55_RS18225	0.30	+1.3
3,953,292	+		LRK55_RS18225	0.36	+0.5
3,953,293	-		LRK55_RS18225	0.36	-1.3
3,953,293	-		LRK55_RS18225	0.36	+2.2
3,953,293	-		LRK55_RS18225	0.36	-0.5
3,953,293	-		LRK55_RS18225	0.36	-0.9
3,953,293	-		LRK55_RS18225	0.36	+0.0
3,953,336	-		LRK55_RS18225	0.43	-0.9
3,953,336	-		LRK55_RS18225	0.43	-2.6
3,953,372	+		LRK55_RS18225	0.50	+0.1
3,953,372	+		LRK55_RS18225	0.50	-0.4
3,953,372	+		LRK55_RS18225	0.50	-2.0
3,953,372	+		LRK55_RS18225	0.50	+0.3
3,953,372	+		LRK55_RS18225	0.50	-0.7
3,953,372	+		LRK55_RS18225	0.50	-1.1
3,953,373	-		LRK55_RS18225	0.50	+0.2
3,953,373	-		LRK55_RS18225	0.50	+0.1
3,953,544	+		LRK55_RS18225	0.79	-2.8
3,953,545	-		LRK55_RS18225	0.79	-1.3
3,953,551	+		LRK55_RS18225	0.80	-1.1
3,953,553	+		LRK55_RS18225	0.80	-3.2
3,953,553	+		LRK55_RS18225	0.80	+0.5
3,953,554	-		LRK55_RS18225	0.80	+1.5
3,953,610	+		LRK55_RS18225	0.90	-0.0
3,953,610	+		LRK55_RS18225	0.90	+0.0
3,953,610	+		LRK55_RS18225	0.90	+0.5
3,953,611	-				-0.3
3,953,611	-				+0.8
3,953,611	-				-0.6
3,953,658	+				+0.3
3,953,662	+				-3.4
3,953,662	+				-1.3
3,953,662	+				-0.2
3,953,662	+				+0.5
3,953,663	-				+0.3
3,953,663	-				+0.0
3,953,663	-				+1.0
3,953,663	-				-0.2
3,953,680	+				+0.8
3,953,680	+				-2.5
3,953,680	+				-1.1
3,953,680	+				+1.7
3,953,680	+				-2.5
3,953,680	+				+2.0
3,953,681	-				-2.6
3,953,681	-				-0.2
3,953,681	-				+0.4
3,953,749	+		LRK55_RS18230	0.10	-2.3
3,953,749	+		LRK55_RS18230	0.10	+1.6
3,953,749	+		LRK55_RS18230	0.10	-0.1
3,953,749	+		LRK55_RS18230	0.10	-1.0
3,953,749	+		LRK55_RS18230	0.10	-0.4
3,953,750	-		LRK55_RS18230	0.10	+1.0
3,953,750	-		LRK55_RS18230	0.10	+0.7
3,953,750	-		LRK55_RS18230	0.10	-2.4
3,953,750	-		LRK55_RS18230	0.10	-1.5
3,953,772	+		LRK55_RS18230	0.14	+0.4
3,953,772	+		LRK55_RS18230	0.14	+0.5
3,953,772	+		LRK55_RS18230	0.14	-2.0
3,953,772	+		LRK55_RS18230	0.14	-0.7
3,953,773	-		LRK55_RS18230	0.14	-1.5
3,953,773	-		LRK55_RS18230	0.14	+1.5
3,953,777	+		LRK55_RS18230	0.14	+1.0
3,953,777	+		LRK55_RS18230	0.14	-1.2
3,953,777	+		LRK55_RS18230	0.14	+0.3
3,953,777	+		LRK55_RS18230	0.14	-0.7
3,953,777	+		LRK55_RS18230	0.14	+0.3
3,953,777	+		LRK55_RS18230	0.14	-0.5
3,953,777	+		LRK55_RS18230	0.14	+0.0
3,953,778	-		LRK55_RS18230	0.14	-1.6
3,953,778	-		LRK55_RS18230	0.14	-1.9
3,953,778	-		LRK55_RS18230	0.14	+0.5
3,953,784	+		LRK55_RS18230	0.15	-0.4
3,953,784	+		LRK55_RS18230	0.15	+1.2
3,953,785	-		LRK55_RS18230	0.15	+1.1
3,953,893	+		LRK55_RS18230	0.31	-0.6
3,953,893	+		LRK55_RS18230	0.31	-0.4
3,953,893	+		LRK55_RS18230	0.31	-2.2
3,953,894	-		LRK55_RS18230	0.31	-1.1
3,953,894	-		LRK55_RS18230	0.31	-0.2
3,953,894	-		LRK55_RS18230	0.31	-0.0
3,953,894	-		LRK55_RS18230	0.31	-3.0
3,953,894	-		LRK55_RS18230	0.31	+0.1
3,953,906	+		LRK55_RS18230	0.33	+0.3
3,953,906	+		LRK55_RS18230	0.33	-1.3
3,953,906	+		LRK55_RS18230	0.33	+0.2
3,953,906	+		LRK55_RS18230	0.33	+0.0
3,953,906	+		LRK55_RS18230	0.33	+0.6
3,953,907	-		LRK55_RS18230	0.33	+1.3
3,953,907	-		LRK55_RS18230	0.33	-0.6
3,953,907	-		LRK55_RS18230	0.33	-2.7