Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18010

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,906,666	+		LRK55_RS18005	0.33	+0.0
3,906,667	-		LRK55_RS18005	0.33	+1.8
3,906,667	-		LRK55_RS18005	0.33	+0.0
3,906,667	-		LRK55_RS18005	0.33	-0.5
3,906,759	+		LRK55_RS18005	0.42	-0.3
3,906,759	+		LRK55_RS18005	0.42	+1.5
3,906,759	+		LRK55_RS18005	0.42	+0.5
3,906,759	+		LRK55_RS18005	0.42	+0.3
3,906,759	+		LRK55_RS18005	0.42	-1.5
3,906,759	+		LRK55_RS18005	0.42	+1.1
3,906,759	+		LRK55_RS18005	0.42	+1.5
3,906,759	+		LRK55_RS18005	0.42	+0.3
3,906,759	+		LRK55_RS18005	0.42	+0.5
3,906,759	+		LRK55_RS18005	0.42	-2.0
3,906,759	+		LRK55_RS18005	0.42	-0.7
3,906,759	+		LRK55_RS18005	0.42	-0.1
3,906,760	-		LRK55_RS18005	0.42	+0.8
3,906,760	-		LRK55_RS18005	0.42	-0.3
3,906,760	-		LRK55_RS18005	0.42	-1.3
3,906,760	-		LRK55_RS18005	0.42	+0.6
3,906,760	-		LRK55_RS18005	0.42	+0.4
3,906,760	-		LRK55_RS18005	0.42	+1.7
3,906,760	-		LRK55_RS18005	0.42	-0.7
3,906,760	-		LRK55_RS18005	0.42	+0.5
3,906,760	-		LRK55_RS18005	0.42	-0.0
3,906,760	-		LRK55_RS18005	0.42	-0.1
3,906,784	+		LRK55_RS18005	0.45	-0.7
3,906,784	+		LRK55_RS18005	0.45	+2.7
3,906,785	-		LRK55_RS18005	0.45	+1.8
3,906,840	+		LRK55_RS18005	0.50	+0.7
3,906,840	+		LRK55_RS18005	0.50	+0.3
3,906,840	+		LRK55_RS18005	0.50	+0.3
3,906,840	+		LRK55_RS18005	0.50	+0.7
3,906,840	+		LRK55_RS18005	0.50	+0.5
3,906,840	+		LRK55_RS18005	0.50	+1.5
3,906,840	+		LRK55_RS18005	0.50	-0.8
3,906,840	+		LRK55_RS18005	0.50	-0.5
3,906,840	+		LRK55_RS18005	0.50	-0.7
3,906,840	+		LRK55_RS18005	0.50	-0.0
3,906,840	+		LRK55_RS18005	0.50	-0.6
3,906,840	+		LRK55_RS18005	0.50	-0.5
3,906,840	+		LRK55_RS18005	0.50	+2.5
3,906,840	+		LRK55_RS18005	0.50	+1.8
3,906,841	-		LRK55_RS18005	0.50	+1.5
3,906,841	-		LRK55_RS18005	0.50	+1.6
3,906,841	-		LRK55_RS18005	0.50	+0.2
3,906,841	-		LRK55_RS18005	0.50	+0.9
3,906,841	-		LRK55_RS18005	0.50	-0.1
3,906,841	-		LRK55_RS18005	0.50	-2.2
3,906,841	-		LRK55_RS18005	0.50	+1.1
3,906,841	-		LRK55_RS18005	0.50	+0.9
3,906,921	+		LRK55_RS18005	0.58	-1.5
3,906,922	-		LRK55_RS18005	0.58	+1.0
3,906,922	-		LRK55_RS18005	0.58	+1.8
3,906,990	+		LRK55_RS18005	0.65	+0.2
3,906,990	+		LRK55_RS18005	0.65	+0.9
3,906,990	+		LRK55_RS18005	0.65	-1.2
3,906,991	-		LRK55_RS18005	0.65	-1.9
3,906,991	-		LRK55_RS18005	0.65	+0.5
3,907,038	+		LRK55_RS18005	0.70	+0.1
3,907,047	+		LRK55_RS18005	0.71	-0.2
3,907,047	+		LRK55_RS18005	0.71	+0.8
3,907,047	+		LRK55_RS18005	0.71	+0.6
3,907,047	+		LRK55_RS18005	0.71	+1.5
3,907,047	+		LRK55_RS18005	0.71	+0.3
3,907,047	+		LRK55_RS18005	0.71	+0.2
3,907,047	+		LRK55_RS18005	0.71	+2.1
3,907,047	+		LRK55_RS18005	0.71	-1.5
3,907,047	+		LRK55_RS18005	0.71	+1.3
3,907,047	+		LRK55_RS18005	0.71	+0.5
3,907,047	+		LRK55_RS18005	0.71	+0.6
3,907,047	+		LRK55_RS18005	0.71	+0.4
3,907,047	+		LRK55_RS18005	0.71	+0.1
3,907,047	+		LRK55_RS18005	0.71	+1.7
3,907,047	+		LRK55_RS18005	0.71	-1.3
3,907,047	+		LRK55_RS18005	0.71	-0.1
3,907,047	+		LRK55_RS18005	0.71	-3.0
3,907,047	+		LRK55_RS18005	0.71	+1.2
3,907,048	-		LRK55_RS18005	0.71	+0.7
3,907,048	-		LRK55_RS18005	0.71	+0.3
3,907,048	-		LRK55_RS18005	0.71	+0.6
3,907,048	-		LRK55_RS18005	0.71	+0.0
3,907,048	-		LRK55_RS18005	0.71	-2.3
3,907,048	-		LRK55_RS18005	0.71	-3.5
3,907,048	-		LRK55_RS18005	0.71	+0.0
3,907,048	-		LRK55_RS18005	0.71	-0.4
3,907,048	-		LRK55_RS18005	0.71	-0.6
3,907,048	-		LRK55_RS18005	0.71	+0.4
3,907,048	-		LRK55_RS18005	0.71	+1.5
3,907,048	-		LRK55_RS18005	0.71	-1.1
3,907,048	-		LRK55_RS18005	0.71	-1.9
3,907,048	-		LRK55_RS18005	0.71	-2.5
3,907,048	-		LRK55_RS18005	0.71	+1.1
3,907,048	-		LRK55_RS18005	0.71	-1.7
3,907,048	-		LRK55_RS18005	0.71	-1.3
3,907,048	-		LRK55_RS18005	0.71	-0.6
3,907,048	-		LRK55_RS18005	0.71	+1.2
3,907,048	-		LRK55_RS18005	0.71	-0.0
3,907,048	-		LRK55_RS18005	0.71	+0.0
3,907,048	-		LRK55_RS18005	0.71	+0.9
3,907,048	-		LRK55_RS18005	0.71	+1.4
3,907,048	-		LRK55_RS18005	0.71	+0.7
3,907,048	-		LRK55_RS18005	0.71	+0.0
3,907,048	-		LRK55_RS18005	0.71	+0.5
3,907,062	+		LRK55_RS18005	0.72	+0.8
3,907,092	+		LRK55_RS18005	0.75	+0.4
3,907,092	+		LRK55_RS18005	0.75	-0.0
3,907,092	+		LRK55_RS18005	0.75	-0.7
3,907,098	+		LRK55_RS18005	0.76	+0.2
3,907,098	+		LRK55_RS18005	0.76	+0.2
3,907,098	+		LRK55_RS18005	0.76	+0.4
3,907,098	+		LRK55_RS18005	0.76	+0.6
3,907,098	+		LRK55_RS18005	0.76	+0.7
3,907,098	+		LRK55_RS18005	0.76	-0.3
3,907,098	+		LRK55_RS18005	0.76	-0.8
3,907,098	+		LRK55_RS18005	0.76	-1.7
3,907,098	+		LRK55_RS18005	0.76	-0.4
3,907,098	+		LRK55_RS18005	0.76	-0.6
3,907,099	-		LRK55_RS18005	0.76	+1.0
3,907,099	-		LRK55_RS18005	0.76	+0.2
3,907,099	-		LRK55_RS18005	0.76	-1.3
3,907,099	-		LRK55_RS18005	0.76	-2.1
3,907,099	-		LRK55_RS18005	0.76	-0.9
3,907,099	-		LRK55_RS18005	0.76	-0.9
3,907,099	-		LRK55_RS18005	0.76	+0.1
3,907,099	-		LRK55_RS18005	0.76	+0.5
3,907,099	-		LRK55_RS18005	0.76	+2.4
3,907,099	-		LRK55_RS18005	0.76	+0.7
3,907,099	-		LRK55_RS18005	0.76	+0.2
3,907,232	+		LRK55_RS18005	0.89	-0.4
3,907,232	+		LRK55_RS18005	0.89	+1.0
3,907,232	+		LRK55_RS18005	0.89	+1.6
3,907,232	+		LRK55_RS18005	0.89	-0.6
3,907,232	+		LRK55_RS18005	0.89	+1.1
3,907,233	-		LRK55_RS18005	0.89	-1.7
3,907,233	-		LRK55_RS18005	0.89	-2.2
3,907,233	-		LRK55_RS18005	0.89	+2.9
3,907,479	+				+0.1
3,907,479	+				-1.7
3,907,479	+				-1.3
3,907,479	+				-2.0
3,907,480	-				-3.1
3,907,480	-				+1.2
3,907,480	-				+0.4
3,907,480	-				-0.1
3,907,480	-				-3.6
3,907,600	+				+0.8
3,907,600	+				-1.2
3,907,600	+				+0.5
3,907,600	+				-1.0
3,907,600	+				-0.7
3,907,600	+				+0.5
3,907,601	-				-0.7
3,907,601	-				+2.1
3,907,601	-				+0.3
3,907,601	-				-1.3
3,907,601	-				+0.7
3,907,601	-				+0.2
3,907,601	-				-1.3
3,907,601	-				-2.1
3,907,614	-				-0.2
3,907,721	-		LRK55_RS18010	0.14	+0.3
3,907,721	-		LRK55_RS18010	0.14	+1.1
3,907,994	-		LRK55_RS18010	0.59	-0.7
3,908,095	+		LRK55_RS18010	0.76	+1.9
3,908,095	+		LRK55_RS18010	0.76	-0.4
3,908,096	-		LRK55_RS18010	0.76	-1.2
3,908,238	-				-0.7
3,908,241	+				-0.5
3,908,241	+				-0.2
3,908,241	+				+0.1
3,908,241	+				+0.6
3,908,241	+				-2.7
3,908,241	+				-2.1
3,908,241	+				-0.4
3,908,241	+				+0.1
3,908,241	+				-0.6
3,908,241	+				+1.0
3,908,241	+				+0.3
3,908,241	+				+0.7
3,908,241	+				-1.7
3,908,241	+				+0.1
3,908,242	-				-0.0
3,908,242	-				-0.0
3,908,242	-				-1.1
3,908,242	-				-0.3
3,908,242	-				+0.5
3,908,242	-				-0.7
3,908,242	-				+2.6
3,908,242	-				-0.9
3,908,242	-				-0.1
3,908,242	-				-0.7
3,908,242	-				+0.1
3,908,244	+				+0.7
3,908,244	+				+0.7
3,908,244	+				+1.3
3,908,244	+				-0.8
3,908,244	+				+1.1
3,908,244	+				-0.5
3,908,244	+				-0.4
3,908,244	+				+1.2
3,908,244	+				+0.6
3,908,244	+				-2.7
3,908,245	-				+0.0
3,908,245	-				-1.9
3,908,245	-				+0.8
3,908,245	-				-0.2
3,908,245	-				-0.3
3,908,247	+				+1.9
3,908,247	+				+0.2
3,908,247	+				-1.1
3,908,247	+				+1.7
3,908,247	+				-0.7
3,908,248	-				-1.5
3,908,248	-				+1.0
3,908,248	-				+0.8
3,908,248	-				+0.2
3,908,248	-				+0.5
3,908,248	-				+0.9
3,908,248	-				+0.2
3,908,248	-				+0.4
3,908,248	-				+0.0
3,908,248	-				-0.2
3,908,248	-				+0.6
3,908,248	-				+0.7
3,908,271	+				+0.2
3,908,271	+				+0.3
3,908,271	+				+0.3
3,908,272	-				-0.7
3,908,272	-				+0.0
3,908,318	+				-1.8
3,908,318	+				+0.4
3,908,318	+				+0.7
3,908,319	-				-2.0
3,908,319	-				-2.9
3,908,319	-				-2.1
3,908,377	+		LRK55_RS18015	0.13	-0.5
3,908,377	+		LRK55_RS18015	0.13	+1.1
3,908,377	+		LRK55_RS18015	0.13	-0.2
3,908,377	+		LRK55_RS18015	0.13	+0.5
3,908,378	-		LRK55_RS18015	0.13	-1.0
3,908,386	+		LRK55_RS18015	0.15	-0.4
3,908,386	+		LRK55_RS18015	0.15	+0.9
3,908,387	-		LRK55_RS18015	0.15	-1.3
3,908,387	-		LRK55_RS18015	0.15	+0.5
3,908,443	+		LRK55_RS18015	0.24	-0.5
3,908,444	-		LRK55_RS18015	0.25	-2.4
3,908,444	-		LRK55_RS18015	0.25	+2.0
3,908,444	-		LRK55_RS18015	0.25	-0.3
3,908,444	-		LRK55_RS18015	0.25	-2.4
3,908,477	-		LRK55_RS18015	0.30	-0.8
3,908,477	-		LRK55_RS18015	0.30	-1.6
3,908,503	+		LRK55_RS18015	0.35	+0.7
3,908,547	+		LRK55_RS18015	0.42	+0.3
3,908,547	+		LRK55_RS18015	0.42	+0.8
3,908,547	+		LRK55_RS18015	0.42	+0.3
3,908,548	-		LRK55_RS18015	0.42	+0.6
3,908,647	+		LRK55_RS18015	0.59	-1.7
3,908,647	+		LRK55_RS18015	0.59	-0.1
3,908,647	+		LRK55_RS18015	0.59	+0.6
3,908,647	+		LRK55_RS18015	0.59	-1.7
3,908,647	+		LRK55_RS18015	0.59	+0.1
3,908,647	+		LRK55_RS18015	0.59	-1.9
3,908,648	-		LRK55_RS18015	0.59	-0.9
3,908,648	-		LRK55_RS18015	0.59	-2.0
3,908,648	-		LRK55_RS18015	0.59	+0.9
3,908,648	-		LRK55_RS18015	0.59	-1.0
3,908,648	-		LRK55_RS18015	0.59	+0.9
3,908,648	-		LRK55_RS18015	0.59	+1.0
3,908,653	+		LRK55_RS18015	0.60	+1.1
3,908,653	+		LRK55_RS18015	0.60	-1.4
3,908,653	+		LRK55_RS18015	0.60	-1.5
3,908,653	+		LRK55_RS18015	0.60	+0.2
3,908,653	+		LRK55_RS18015	0.60	-1.1
3,908,653	+		LRK55_RS18015	0.60	+0.4
3,908,653	+		LRK55_RS18015	0.60	+0.7
3,908,653	+		LRK55_RS18015	0.60	-1.2
3,908,653	+		LRK55_RS18015	0.60	-2.0
3,908,653	+		LRK55_RS18015	0.60	+1.0
3,908,653	+		LRK55_RS18015	0.60	-0.0
3,908,653	+		LRK55_RS18015	0.60	-2.8
3,908,654	-		LRK55_RS18015	0.60	+0.7
3,908,654	-		LRK55_RS18015	0.60	+0.0
3,908,654	-		LRK55_RS18015	0.60	+1.1
3,908,654	-		LRK55_RS18015	0.60	-4.0
3,908,654	-		LRK55_RS18015	0.60	+0.6
3,908,654	-		LRK55_RS18015	0.60	+2.3
3,908,654	-		LRK55_RS18015	0.60	+2.0
3,908,654	-		LRK55_RS18015	0.60	-2.4
3,908,654	-		LRK55_RS18015	0.60	+0.5
3,908,654	-		LRK55_RS18015	0.60	-1.1
3,908,654	-		LRK55_RS18015	0.60	+0.5
3,908,692	+		LRK55_RS18015	0.66	+1.3
3,908,692	+		LRK55_RS18015	0.66	-0.9
3,908,692	+		LRK55_RS18015	0.66	+0.5
3,908,692	+		LRK55_RS18015	0.66	-0.5
3,908,726	+		LRK55_RS18015	0.72	-0.1
3,908,726	+		LRK55_RS18015	0.72	+1.2
3,908,726	+		LRK55_RS18015	0.72	+0.3
3,908,726	+		LRK55_RS18015	0.72	+2.2
3,908,726	+		LRK55_RS18015	0.72	+1.0
3,908,726	+		LRK55_RS18015	0.72	-0.2
3,908,726	+		LRK55_RS18015	0.72	+0.3
3,908,726	+		LRK55_RS18015	0.72	-0.4
3,908,726	+		LRK55_RS18015	0.72	-0.2
3,908,726	+		LRK55_RS18015	0.72	+0.5
3,908,727	-		LRK55_RS18015	0.72	+0.3
3,908,727	-		LRK55_RS18015	0.72	+0.5
3,908,727	-		LRK55_RS18015	0.72	-1.9
3,908,727	-		LRK55_RS18015	0.72	-1.1
3,908,727	-		LRK55_RS18015	0.72	-0.1
3,908,727	-		LRK55_RS18015	0.72	+0.1
3,908,727	-		LRK55_RS18015	0.72	-0.7
3,908,728	+		LRK55_RS18015	0.73	+0.5
3,908,729	-		LRK55_RS18015	0.73	-0.9
3,908,729	-		LRK55_RS18015	0.73	+1.1
3,908,729	-		LRK55_RS18015	0.73	+0.1
3,908,746	-		LRK55_RS18015	0.76	+0.1
3,908,789	-		LRK55_RS18015	0.83	-0.8
3,908,887	+				+0.9
3,908,887	+				+0.4
3,908,888	-				+1.1
3,908,888	-				+0.7
3,908,888	-				-3.1
3,908,902	+				-2.0
3,908,902	+				-2.3
3,908,902	+				-1.1
3,908,902	+				+1.0
3,908,903	-				+0.4
3,908,903	-				-0.0
3,908,903	-				+0.2
3,908,903	-				+0.6
3,908,903	-				+0.9
3,908,903	-				+0.7
3,908,903	-				-0.1
3,908,903	-				-2.5
3,908,903	-				-0.1
3,908,903	-				+0.4
3,908,912	+				+0.4
3,908,913	-				+0.0
3,908,913	-				+1.3
3,908,969	+				+0.0
3,908,970	-				-0.5
3,908,997	-				+1.0
3,908,997	-				-0.1
3,908,997	-				-0.0
3,908,997	-				+0.4
3,909,019	+				-0.8
3,909,019	+				+0.8
3,909,019	+				-0.9
3,909,019	+				-0.9
3,909,019	+				+0.6
3,909,019	+				+0.7
3,909,020	-				-0.5
3,909,020	-				+0.0
3,909,020	-				-1.1
3,909,020	-				+1.5
3,909,020	-				+0.9
3,909,154	+		LRK55_RS18020	0.27	-2.2
3,909,154	+		LRK55_RS18020	0.27	+0.3
3,909,155	-		LRK55_RS18020	0.27	+0.8
3,909,155	-		LRK55_RS18020	0.27	+0.7