Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16740

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,632,811	+				+0.8
3,632,811	+				+1.2
3,632,811	+				+1.3
3,632,811	+				-0.6
3,632,811	+				+0.1
3,632,811	+				+0.5
3,632,811	+				+1.0
3,632,811	+				-0.4
3,632,811	+				+0.9
3,632,811	+				-1.8
3,632,811	+				-0.8
3,632,811	+				+1.4
3,632,811	+				+0.9
3,632,811	+				+0.5
3,632,811	+				-2.5
3,632,812	-				-0.6
3,632,812	-				+2.6
3,632,812	-				-0.9
3,632,812	-				+0.1
3,632,812	-				-0.4
3,632,812	-				+0.4
3,632,812	-				+0.3
3,632,812	-				-0.1
3,632,812	-				+1.0
3,632,970	+		LRK55_RS16735	0.28	+0.7
3,632,970	+		LRK55_RS16735	0.28	-0.1
3,632,971	-		LRK55_RS16735	0.28	+0.9
3,632,971	-		LRK55_RS16735	0.28	+0.8
3,632,971	-		LRK55_RS16735	0.28	+0.5
3,632,971	-		LRK55_RS16735	0.28	+1.4
3,632,971	-		LRK55_RS16735	0.28	+1.3
3,632,992	+		LRK55_RS16735	0.31	-1.5
3,632,992	+		LRK55_RS16735	0.31	-0.1
3,632,993	-		LRK55_RS16735	0.31	+0.9
3,632,993	-		LRK55_RS16735	0.31	+0.1
3,633,096	+		LRK55_RS16735	0.45	+0.0
3,633,096	+		LRK55_RS16735	0.45	-0.0
3,633,096	+		LRK55_RS16735	0.45	+0.5
3,633,097	-		LRK55_RS16735	0.45	+2.0
3,633,097	-		LRK55_RS16735	0.45	-1.4
3,633,097	-		LRK55_RS16735	0.45	+1.2
3,633,097	-		LRK55_RS16735	0.45	-0.7
3,633,097	-		LRK55_RS16735	0.45	-1.6
3,633,097	-		LRK55_RS16735	0.45	-0.2
3,633,119	+		LRK55_RS16735	0.48	-0.5
3,633,120	+		LRK55_RS16735	0.48	-0.6
3,633,120	+		LRK55_RS16735	0.48	-1.2
3,633,120	+		LRK55_RS16735	0.48	+0.7
3,633,120	+		LRK55_RS16735	0.48	-0.1
3,633,120	+		LRK55_RS16735	0.48	+0.6
3,633,120	+		LRK55_RS16735	0.48	-0.2
3,633,121	-		LRK55_RS16735	0.48	+0.0
3,633,121	-		LRK55_RS16735	0.48	+1.5
3,633,121	-		LRK55_RS16735	0.48	-2.1
3,633,121	-		LRK55_RS16735	0.48	-3.0
3,633,121	-		LRK55_RS16735	0.48	+0.2
3,633,121	-		LRK55_RS16735	0.48	-0.1
3,633,121	-		LRK55_RS16735	0.48	+0.1
3,633,121	-		LRK55_RS16735	0.48	+0.4
3,633,171	+		LRK55_RS16735	0.55	-1.1
3,633,171	+		LRK55_RS16735	0.55	+2.3
3,633,171	+		LRK55_RS16735	0.55	-0.7
3,633,171	+		LRK55_RS16735	0.55	-1.6
3,633,171	+		LRK55_RS16735	0.55	-0.4
3,633,171	+		LRK55_RS16735	0.55	+0.3
3,633,171	+		LRK55_RS16735	0.55	+1.2
3,633,172	-		LRK55_RS16735	0.55	-0.4
3,633,172	-		LRK55_RS16735	0.55	-1.4
3,633,172	-		LRK55_RS16735	0.55	+0.8
3,633,172	-		LRK55_RS16735	0.55	+1.6
3,633,172	-		LRK55_RS16735	0.55	-0.0
3,633,172	-		LRK55_RS16735	0.55	+1.4
3,633,172	-		LRK55_RS16735	0.55	-0.4
3,633,172	-		LRK55_RS16735	0.55	-2.8
3,633,172	-		LRK55_RS16735	0.55	+0.7
3,633,172	-		LRK55_RS16735	0.55	+0.3
3,633,247	-		LRK55_RS16735	0.65	+1.1
3,633,247	-		LRK55_RS16735	0.65	+0.4
3,633,375	+		LRK55_RS16735	0.81	+0.2
3,633,375	+		LRK55_RS16735	0.81	+0.2
3,633,375	+		LRK55_RS16735	0.81	-1.7
3,633,375	+		LRK55_RS16735	0.81	+1.1
3,633,375	+		LRK55_RS16735	0.81	-0.3
3,633,375	+		LRK55_RS16735	0.81	-0.6
3,633,376	-		LRK55_RS16735	0.82	+1.2
3,633,376	-		LRK55_RS16735	0.82	-1.1
3,633,376	-		LRK55_RS16735	0.82	-0.3
3,633,376	-		LRK55_RS16735	0.82	-3.1
3,633,376	-		LRK55_RS16735	0.82	-0.6
3,633,580	+				-1.5
3,633,580	+				+0.6
3,633,580	+				-1.1
3,633,580	+				+0.7
3,633,580	+				-3.0
3,633,580	+				-0.4
3,633,580	+				-1.3
3,633,580	+				+1.1
3,633,580	+				+0.2
3,633,580	+				+0.2
3,633,580	+				-0.0
3,633,580	+				-1.4
3,633,580	+				+1.0
3,633,581	-				-0.9
3,633,581	-				-1.1
3,633,581	-				-1.5
3,633,581	-				-0.8
3,633,581	-				-0.8
3,633,581	-				+1.6
3,633,581	-				-1.4
3,633,581	-				+0.5
3,633,581	-				+0.6
3,633,581	-				-0.6
3,633,581	-				-2.3
3,633,581	-				+0.0
3,633,581	-				-0.2
3,633,581	-				+0.4
3,633,581	-				+1.0
3,633,581	-				+0.8
3,633,581	-				-1.4
3,633,898	+				-0.3
3,633,898	+				-1.4
3,633,898	+				-0.9
3,633,898	+				-0.5
3,633,898	+				-3.8
3,633,898	+				-0.4
3,633,898	+				+1.4
3,633,898	+				-2.3
3,633,899	-				-0.9
3,633,899	-				-0.7
3,633,899	-				+1.9
3,633,899	-				-1.7
3,633,899	-				-1.1
3,633,899	-				-1.3
3,633,899	-				+0.9
3,633,899	-				+1.4
3,633,899	-				-1.0
3,633,903	+				-0.7
3,633,903	+				+0.4
3,633,903	+				+0.2
3,633,903	+				+0.9
3,633,904	-				+0.7
3,633,904	-				+0.2
3,633,957	+				-0.1
3,633,957	+				+2.3
3,633,957	+				-1.9
3,633,957	+				-0.6
3,633,957	+				-0.3
3,633,958	-				+0.9
3,633,958	-				+1.7
3,633,958	-				+0.4
3,634,214	+		LRK55_RS16745	0.24	-0.4
3,634,214	+		LRK55_RS16745	0.24	+0.4
3,634,214	+		LRK55_RS16745	0.24	+3.6
3,634,214	+		LRK55_RS16745	0.24	-1.4
3,634,214	+		LRK55_RS16745	0.24	+0.8
3,634,214	+		LRK55_RS16745	0.24	+1.2
3,634,214	+		LRK55_RS16745	0.24	-2.5
3,634,215	-		LRK55_RS16745	0.24	+1.2
3,634,215	-		LRK55_RS16745	0.24	+0.4
3,634,215	-		LRK55_RS16745	0.24	-0.2
3,634,215	-		LRK55_RS16745	0.24	+0.3
3,634,215	-		LRK55_RS16745	0.24	-0.4
3,634,488	+		LRK55_RS16745	0.50	-0.6
3,634,488	+		LRK55_RS16745	0.50	+0.6
3,634,489	-		LRK55_RS16745	0.50	+0.9
3,634,489	-		LRK55_RS16745	0.50	-0.9
3,634,489	-		LRK55_RS16745	0.50	-4.0
3,634,522	-		LRK55_RS16745	0.53	-2.3
3,634,692	+		LRK55_RS16745	0.69	-1.7
3,634,692	+		LRK55_RS16745	0.69	+2.9
3,634,692	+		LRK55_RS16745	0.69	-0.2
3,634,693	-		LRK55_RS16745	0.70	+1.3
3,634,693	-		LRK55_RS16745	0.70	-0.8
3,634,693	-		LRK55_RS16745	0.70	-3.5
3,634,693	-		LRK55_RS16745	0.70	+0.9
3,634,693	-		LRK55_RS16745	0.70	-0.7
3,634,693	-		LRK55_RS16745	0.70	+0.7