Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16650

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,613,071	+				-2.3
3,613,071	+				-1.1
3,613,071	+				-0.3
3,613,071	+				+1.9
3,613,072	-				-1.4
3,613,072	-				-2.4
3,613,072	-				-1.5
3,613,072	-				-0.1
3,613,072	-				-1.4
3,613,072	-				+1.8
3,613,072	-				+0.3
3,613,072	-				-0.3
3,613,072	-				+0.2
3,613,072	-				+1.4
3,613,100	+				+0.4
3,613,100	+				+1.6
3,613,100	+				-0.1
3,613,100	+				+0.8
3,613,100	+				-1.6
3,613,100	+				-0.4
3,613,151	-				+0.6
3,613,351	+				+0.2
3,613,352	-				-0.6
3,613,390	+				-0.7
3,613,390	+				+0.2
3,613,390	+				+1.4
3,613,391	-				-1.6
3,613,391	-				-1.9
3,613,436	+		LRK55_RS16645	0.11	-0.7
3,613,436	+		LRK55_RS16645	0.11	-2.3
3,613,436	+		LRK55_RS16645	0.11	-1.8
3,613,437	-		LRK55_RS16645	0.12	-1.7
3,613,437	-		LRK55_RS16645	0.12	-2.6
3,613,437	-		LRK55_RS16645	0.12	-2.9
3,613,437	-		LRK55_RS16645	0.12	-1.9
3,613,539	+		LRK55_RS16645	0.32	-1.8
3,613,539	+		LRK55_RS16645	0.32	-0.3
3,613,539	+		LRK55_RS16645	0.32	+0.9
3,613,539	+		LRK55_RS16645	0.32	-0.3
3,613,539	+		LRK55_RS16645	0.32	-1.1
3,613,539	+		LRK55_RS16645	0.32	+0.7
3,613,539	+		LRK55_RS16645	0.32	-1.9
3,613,539	+		LRK55_RS16645	0.32	-0.1
3,613,539	+		LRK55_RS16645	0.32	-0.9
3,613,539	+		LRK55_RS16645	0.32	-2.6
3,613,539	+		LRK55_RS16645	0.32	-0.9
3,613,539	+		LRK55_RS16645	0.32	-2.6
3,613,540	-		LRK55_RS16645	0.32	-2.6
3,613,540	-		LRK55_RS16645	0.32	-0.4
3,613,540	-		LRK55_RS16645	0.32	+0.3
3,613,540	-		LRK55_RS16645	0.32	-1.6
3,613,540	-		LRK55_RS16645	0.32	-1.8
3,613,540	-		LRK55_RS16645	0.32	-1.0
3,613,540	-		LRK55_RS16645	0.32	-0.9
3,613,540	-		LRK55_RS16645	0.32	-0.6
3,613,540	-		LRK55_RS16645	0.32	-0.6
3,613,540	-		LRK55_RS16645	0.32	-2.4
3,613,629	+		LRK55_RS16645	0.50	+0.6
3,613,629	+		LRK55_RS16645	0.50	-1.4
3,613,629	+		LRK55_RS16645	0.50	-0.0
3,613,629	+		LRK55_RS16645	0.50	-3.4
3,613,629	+		LRK55_RS16645	0.50	-0.1
3,613,629	+		LRK55_RS16645	0.50	-3.0
3,613,629	+		LRK55_RS16645	0.50	-0.9
3,613,630	-		LRK55_RS16645	0.51	+1.0
3,613,630	-		LRK55_RS16645	0.51	-1.4
3,613,630	-		LRK55_RS16645	0.51	-3.3
3,613,630	-		LRK55_RS16645	0.51	-2.1
3,613,630	-		LRK55_RS16645	0.51	-3.4
3,613,630	-		LRK55_RS16645	0.51	-1.9
3,613,630	-		LRK55_RS16645	0.51	-2.1
3,613,630	-		LRK55_RS16645	0.51	+0.1
3,613,630	-		LRK55_RS16645	0.51	-0.9
3,613,659	+		LRK55_RS16645	0.56	-1.1
3,613,659	+		LRK55_RS16645	0.56	+0.2
3,613,659	+		LRK55_RS16645	0.56	-1.1
3,613,659	+		LRK55_RS16645	0.56	-1.7
3,613,660	-		LRK55_RS16645	0.57	-3.5
3,613,660	-		LRK55_RS16645	0.57	+1.1
3,613,660	-		LRK55_RS16645	0.57	-3.2
3,613,967	-				-3.4
3,613,994	+				+0.6
3,613,994	+				+0.6
3,613,994	+				-1.6
3,613,995	-				-0.4
3,613,995	-				-1.1
3,613,995	-				-0.6
3,613,995	-				+1.0
3,613,995	-				-3.0
3,613,995	-				+1.1
3,614,323	+		LRK55_RS16650	0.17	-1.6
3,614,323	+		LRK55_RS16650	0.17	-0.0
3,614,324	-		LRK55_RS16650	0.17	-3.7
3,614,329	+		LRK55_RS16650	0.17	-0.9
3,614,330	-		LRK55_RS16650	0.17	-1.9
3,614,330	-		LRK55_RS16650	0.17	-0.1
3,614,330	-		LRK55_RS16650	0.17	-1.0
3,614,330	-		LRK55_RS16650	0.17	-2.3
3,614,330	-		LRK55_RS16650	0.17	-1.8
3,614,525	-		LRK55_RS16650	0.25	-3.1
3,614,525	-		LRK55_RS16650	0.25	-2.8
3,614,752	+		LRK55_RS16650	0.34	+1.4
3,614,752	+		LRK55_RS16650	0.34	-2.3
3,614,752	+		LRK55_RS16650	0.34	+1.0
3,614,752	+		LRK55_RS16650	0.34	-0.4
3,614,753	-		LRK55_RS16650	0.34	-1.0
3,614,753	-		LRK55_RS16650	0.34	+0.6
3,614,753	-		LRK55_RS16650	0.34	-1.7
3,614,753	-		LRK55_RS16650	0.34	-0.5
3,614,753	-		LRK55_RS16650	0.34	+0.3
3,614,753	-		LRK55_RS16650	0.34	-1.5
3,614,753	-		LRK55_RS16650	0.34	-1.7
3,614,762	+		LRK55_RS16650	0.34	-1.1
3,614,762	+		LRK55_RS16650	0.34	-2.0
3,614,762	+		LRK55_RS16650	0.34	-0.7
3,614,762	+		LRK55_RS16650	0.34	+0.1
3,614,762	+		LRK55_RS16650	0.34	+0.2
3,614,762	+		LRK55_RS16650	0.34	-1.1
3,614,762	+		LRK55_RS16650	0.34	+1.3
3,614,762	+		LRK55_RS16650	0.34	+0.2
3,614,763	-		LRK55_RS16650	0.34	-4.2
3,614,763	-		LRK55_RS16650	0.34	-2.6
3,614,763	-		LRK55_RS16650	0.34	-2.5
3,614,763	-		LRK55_RS16650	0.34	-2.7
3,614,763	-		LRK55_RS16650	0.34	-0.1
3,614,980	+		LRK55_RS16650	0.43	-4.6
3,614,980	+		LRK55_RS16650	0.43	-2.6
3,614,981	-		LRK55_RS16650	0.43	-2.5
3,614,999	+		LRK55_RS16650	0.43	-1.0
3,615,000	-		LRK55_RS16650	0.43	+0.4
3,615,000	-		LRK55_RS16650	0.43	-1.6
3,615,000	-		LRK55_RS16650	0.43	-0.8
3,615,000	-		LRK55_RS16650	0.43	-0.1
3,615,000	-		LRK55_RS16650	0.43	+0.9
3,615,000	-		LRK55_RS16650	0.43	+0.2
3,615,283	+		LRK55_RS16650	0.54	-2.0
3,615,283	+		LRK55_RS16650	0.54	+0.9
3,615,283	+		LRK55_RS16650	0.54	-1.6
3,615,284	-		LRK55_RS16650	0.54	-2.9
3,615,284	-		LRK55_RS16650	0.54	-3.3
3,615,284	-		LRK55_RS16650	0.54	-1.4
3,615,284	-		LRK55_RS16650	0.54	-3.4
3,615,284	-		LRK55_RS16650	0.54	-4.2
3,615,284	-		LRK55_RS16650	0.54	-1.3
3,615,284	-		LRK55_RS16650	0.54	-0.3
3,615,371	-		LRK55_RS16650	0.58	-3.2
3,615,405	+		LRK55_RS16650	0.59	-1.3
3,615,405	+		LRK55_RS16650	0.59	-3.4
3,615,406	-		LRK55_RS16650	0.59	-1.9
3,615,406	-		LRK55_RS16650	0.59	-1.4
3,615,583	+		LRK55_RS16650	0.66	-0.3
3,615,583	+		LRK55_RS16650	0.66	+1.6
3,615,583	+		LRK55_RS16650	0.66	-3.0
3,615,583	+		LRK55_RS16650	0.66	-1.3
3,615,583	+		LRK55_RS16650	0.66	+2.0
3,615,583	+		LRK55_RS16650	0.66	+0.6
3,615,583	+		LRK55_RS16650	0.66	-1.1
3,615,583	+		LRK55_RS16650	0.66	-0.6
3,615,583	+		LRK55_RS16650	0.66	-3.0
3,615,584	-		LRK55_RS16650	0.66	-1.6
3,615,584	-		LRK55_RS16650	0.66	-1.1
3,615,584	-		LRK55_RS16650	0.66	+0.9
3,615,584	-		LRK55_RS16650	0.66	-2.5
3,615,584	-		LRK55_RS16650	0.66	-0.1
3,615,584	-		LRK55_RS16650	0.66	-3.2
3,615,584	-		LRK55_RS16650	0.66	-1.4
3,615,584	-		LRK55_RS16650	0.66	-0.9
3,615,584	-		LRK55_RS16650	0.66	-1.7
3,615,584	-		LRK55_RS16650	0.66	-2.1
3,615,622	+		LRK55_RS16650	0.68	-2.2
3,615,622	+		LRK55_RS16650	0.68	-2.9
3,615,622	+		LRK55_RS16650	0.68	-1.7
3,615,622	+		LRK55_RS16650	0.68	-2.5
3,615,623	-		LRK55_RS16650	0.68	-3.5
3,615,623	-		LRK55_RS16650	0.68	-0.5
3,615,623	-		LRK55_RS16650	0.68	-2.0
3,615,623	-		LRK55_RS16650	0.68	-0.6
3,615,640	+		LRK55_RS16650	0.68	-1.8
3,615,641	-		LRK55_RS16650	0.68	-2.1
3,615,641	-		LRK55_RS16650	0.68	-2.7
3,615,715	+		LRK55_RS16650	0.71	+1.3
3,615,715	+		LRK55_RS16650	0.71	-0.1
3,615,715	+		LRK55_RS16650	0.71	-0.5
3,615,716	-		LRK55_RS16650	0.71	-1.3
3,615,716	-		LRK55_RS16650	0.71	-0.1
3,615,911	-		LRK55_RS16650	0.79	-0.1
3,616,156	+		LRK55_RS16650	0.88	-1.6
3,616,156	+		LRK55_RS16650	0.88	+1.7
3,616,156	+		LRK55_RS16650	0.88	-1.1
3,616,157	-		LRK55_RS16650	0.88	-0.9
3,616,360	+				-1.8
3,616,360	+				+1.9
3,616,360	+				-2.6
3,616,360	+				-3.6
3,616,361	-				-1.6
3,616,361	-				+1.0
3,616,361	-				-1.1
3,616,361	-				-2.7
3,616,476	+				+0.1
3,616,476	+				+0.9
3,616,476	+				+1.0
3,616,476	+				+0.3
3,616,477	-				-0.2
3,616,477	-				+0.7
3,616,477	-				-0.9
3,616,480	+				-0.6
3,616,480	+				+0.4
3,616,480	+				-0.1
3,616,480	+				+2.4
3,616,480	+				-0.1
3,616,480	+				+1.0
3,616,480	+				-2.7
3,616,480	+				+1.2
3,616,480	+				+0.5
3,616,480	+				-2.3
3,616,480	+				+0.4
3,616,480	+				-0.2
3,616,481	-				-2.6
3,616,481	-				-1.8
3,616,481	-				-4.1
3,616,481	-				-2.3
3,616,481	-				+0.6
3,616,481	-				-1.4
3,616,481	-				-2.6
3,616,481	-				-2.0
3,616,481	-				-2.4
3,616,481	-				-1.7
3,616,540	+				+0.6
3,616,540	+				+0.7
3,616,540	+				+1.4
3,616,540	+				-2.4
3,616,540	+				+0.2
3,616,540	+				+0.0
3,616,540	+				-1.1
3,616,540	+				-1.9
3,616,540	+				-0.3
3,616,540	+				-1.1
3,616,540	+				-0.5
3,616,540	+				-0.9
3,616,540	+				-0.4
3,616,541	-				+1.1
3,616,541	-				-1.4
3,616,541	-				-0.6
3,616,541	-				-0.6
3,616,541	-				-0.4
3,616,541	-				-1.7
3,616,541	-				-0.5
3,616,541	-				+0.3
3,616,541	-				+0.8
3,616,541	-				-0.3
3,616,541	-				+0.5
3,616,541	-				+0.7
3,616,541	-				-0.3
3,616,541	-				-0.6
3,616,541	-				-0.3
3,616,541	-				-1.6
3,616,541	-				+0.4