Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15630

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,422,495	+		LRK55_RS15620	0.82	-0.6
3,422,495	+		LRK55_RS15620	0.82	-1.6
3,422,496	-		LRK55_RS15620	0.82	+0.6
3,422,496	-		LRK55_RS15620	0.82	+0.1
3,422,536	-				+0.5
3,422,536	-				+2.1
3,422,627	+				+1.4
3,422,627	+				-0.6
3,422,628	-				+2.5
3,422,628	-				-1.3
3,422,628	-				+1.4
3,422,628	-				+1.0
3,422,628	-				+2.2
3,422,628	-				+0.7
3,422,628	-				+1.0
3,422,628	-				-0.2
3,422,628	-				-1.0
3,422,628	-				+0.7
3,422,642	+				-0.0
3,422,642	+				+1.1
3,422,642	+				-0.6
3,422,642	+				+0.2
3,422,643	-				+0.5
3,422,643	-				-3.3
3,422,744	+				+0.1
3,422,744	+				-1.5
3,422,744	+				+0.1
3,422,744	+				+1.7
3,422,744	+				+0.3
3,422,745	-				-0.9
3,422,745	-				-0.3
3,422,745	-				+0.5
3,422,745	-				+1.9
3,422,745	-				+0.3
3,422,745	-				+0.5
3,422,787	-		LRK55_RS15625	0.12	+1.5
3,422,849	+		LRK55_RS15625	0.23	+0.6
3,422,850	-		LRK55_RS15625	0.24	+2.4
3,422,850	-		LRK55_RS15625	0.24	+1.2
3,422,850	-		LRK55_RS15625	0.24	+0.7
3,423,058	+		LRK55_RS15625	0.63	+1.0
3,423,058	+		LRK55_RS15625	0.63	-0.7
3,423,059	-		LRK55_RS15625	0.63	+1.2
3,423,059	-		LRK55_RS15625	0.63	+0.7
3,423,066	-		LRK55_RS15625	0.65	+0.3
3,423,161	+		LRK55_RS15625	0.83	-2.9
3,423,161	+		LRK55_RS15625	0.83	+0.8
3,423,203	+				-0.5
3,423,203	+				-0.2
3,423,203	+				-0.2
3,423,203	+				-2.5
3,423,203	+				+0.8
3,423,203	+				-0.2
3,423,203	+				+1.5
3,423,203	+				+0.8
3,423,203	+				-0.6
3,423,203	+				-1.8
3,423,203	+				+0.7
3,423,203	+				+0.8
3,423,203	+				+0.3
3,423,203	+				-0.2
3,423,203	+				-0.8
3,423,204	-				-0.8
3,423,204	-				+0.6
3,423,204	-				+0.0
3,423,204	-				+1.4
3,423,204	-				+0.2
3,423,204	-				+0.6
3,423,204	-				-1.6
3,423,204	-				+0.3
3,423,204	-				+1.0
3,423,204	-				-1.2
3,423,204	-				+0.2
3,423,204	-				+2.7
3,423,204	-				+0.5
3,423,230	-				-3.1
3,423,230	-				-2.0
3,423,278	+				-0.5
3,423,279	-				-1.3
3,423,279	-				-0.2
3,423,279	-				+0.9
3,423,279	-				+1.4
3,423,279	-				-0.1
3,423,429	+				+2.2
3,423,429	+				-1.5
3,423,429	+				+1.8
3,423,429	+				+0.8
3,423,429	+				-3.0
3,423,578	+		LRK55_RS15630	0.15	+0.4
3,423,578	+		LRK55_RS15630	0.15	+0.9
3,423,578	+		LRK55_RS15630	0.15	+1.8
3,423,578	+		LRK55_RS15630	0.15	-1.0
3,423,578	+		LRK55_RS15630	0.15	-1.8
3,423,579	-		LRK55_RS15630	0.15	+1.6
3,423,579	-		LRK55_RS15630	0.15	-0.0
3,423,601	+		LRK55_RS15630	0.18	+0.4
3,423,817	+		LRK55_RS15630	0.48	+0.4
3,423,817	+		LRK55_RS15630	0.48	+1.5
3,423,817	+		LRK55_RS15630	0.48	+0.5
3,423,817	+		LRK55_RS15630	0.48	+0.9
3,423,817	+		LRK55_RS15630	0.48	-2.1
3,423,817	+		LRK55_RS15630	0.48	+1.3
3,423,817	+		LRK55_RS15630	0.48	-0.9
3,423,817	+		LRK55_RS15630	0.48	+0.8
3,423,817	+		LRK55_RS15630	0.48	-0.8
3,423,818	-		LRK55_RS15630	0.48	+0.2
3,423,818	-		LRK55_RS15630	0.48	-0.2
3,423,818	-		LRK55_RS15630	0.48	+1.8
3,423,818	-		LRK55_RS15630	0.48	+0.6
3,423,818	-		LRK55_RS15630	0.48	+0.8
3,423,818	-		LRK55_RS15630	0.48	-1.5
3,423,818	-		LRK55_RS15630	0.48	+0.9
3,423,823	+		LRK55_RS15630	0.49	-0.1
3,423,823	+		LRK55_RS15630	0.49	-1.2
3,423,823	+		LRK55_RS15630	0.49	+0.9
3,423,824	-		LRK55_RS15630	0.49	-0.8
3,423,824	-		LRK55_RS15630	0.49	+0.4
3,423,847	+		LRK55_RS15630	0.53	+0.7
3,423,847	+		LRK55_RS15630	0.53	+0.5
3,423,847	+		LRK55_RS15630	0.53	+1.6
3,423,847	+		LRK55_RS15630	0.53	+0.0
3,423,847	+		LRK55_RS15630	0.53	+0.1
3,423,848	-		LRK55_RS15630	0.53	+1.6
3,423,848	-		LRK55_RS15630	0.53	-0.7
3,423,848	-		LRK55_RS15630	0.53	-2.6
3,423,848	-		LRK55_RS15630	0.53	-0.1
3,423,848	-		LRK55_RS15630	0.53	-0.9
3,423,848	-		LRK55_RS15630	0.53	-2.8
3,423,848	-		LRK55_RS15630	0.53	-0.2
3,423,848	-		LRK55_RS15630	0.53	-2.7
3,423,848	-		LRK55_RS15630	0.53	-2.1
3,423,848	-		LRK55_RS15630	0.53	+2.7
3,423,848	-		LRK55_RS15630	0.53	-1.0
3,423,848	-		LRK55_RS15630	0.53	-2.0
3,423,848	-		LRK55_RS15630	0.53	-3.0
3,423,931	+		LRK55_RS15630	0.64	-0.2
3,423,931	+		LRK55_RS15630	0.64	-0.5
3,423,931	+		LRK55_RS15630	0.64	-0.2
3,423,931	+		LRK55_RS15630	0.64	-2.0
3,423,931	+		LRK55_RS15630	0.64	-0.1
3,423,931	+		LRK55_RS15630	0.64	-0.2
3,423,931	+		LRK55_RS15630	0.64	-1.6
3,423,931	+		LRK55_RS15630	0.64	+1.8
3,423,931	+		LRK55_RS15630	0.64	+0.3
3,423,931	+		LRK55_RS15630	0.64	-0.6
3,423,932	-		LRK55_RS15630	0.64	+0.2
3,423,932	-		LRK55_RS15630	0.64	-0.3
3,423,932	-		LRK55_RS15630	0.64	-0.1
3,423,932	-		LRK55_RS15630	0.64	+0.8
3,423,932	-		LRK55_RS15630	0.64	-0.5
3,423,932	-		LRK55_RS15630	0.64	-0.5
3,423,932	-		LRK55_RS15630	0.64	+0.4
3,423,932	-		LRK55_RS15630	0.64	-2.7
3,423,932	-		LRK55_RS15630	0.64	-0.2
3,423,932	-		LRK55_RS15630	0.64	+0.3
3,423,932	-		LRK55_RS15630	0.64	-0.2
3,423,932	-		LRK55_RS15630	0.64	-2.2
3,423,932	-		LRK55_RS15630	0.64	-2.3
3,423,932	-		LRK55_RS15630	0.64	-0.4
3,423,932	-		LRK55_RS15630	0.64	-0.7
3,423,932	-		LRK55_RS15630	0.64	+0.3
3,424,126	+				+1.0
3,424,126	+				+0.1
3,424,126	+				+0.9
3,424,126	+				+0.8
3,424,126	+				-0.1
3,424,126	+				+1.3
3,424,126	+				+0.1
3,424,126	+				+1.5
3,424,126	+				+0.6
3,424,126	+				+0.1
3,424,126	+				+0.6
3,424,126	+				-0.1
3,424,126	+				+0.5
3,424,126	+				+0.1
3,424,126	+				+1.0
3,424,126	+				+0.4
3,424,127	-				-2.0
3,424,127	-				+0.5
3,424,127	-				+1.5
3,424,127	-				-1.0
3,424,127	-				+0.4
3,424,127	-				-2.1
3,424,127	-				-0.3
3,424,127	-				-2.2
3,424,127	-				+1.0
3,424,127	-				-0.7
3,424,127	-				+0.6
3,424,127	-				-0.6
3,424,127	-				+0.4
3,424,127	-				+0.9
3,424,127	-				+1.2
3,424,127	-				-0.1
3,424,127	-				+0.7
3,424,315	+		LRK55_RS15635	0.10	-0.1
3,424,315	+		LRK55_RS15635	0.10	+0.2
3,424,315	+		LRK55_RS15635	0.10	-1.9
3,424,316	-		LRK55_RS15635	0.10	-1.3
3,424,316	-		LRK55_RS15635	0.10	-0.4
3,424,316	-		LRK55_RS15635	0.10	+0.8
3,424,316	-		LRK55_RS15635	0.10	-0.4
3,424,333	+		LRK55_RS15635	0.12	+0.5
3,424,333	+		LRK55_RS15635	0.12	-0.2
3,424,333	+		LRK55_RS15635	0.12	-1.2
3,424,334	-		LRK55_RS15635	0.12	+1.4
3,424,334	-		LRK55_RS15635	0.12	-2.3
3,424,564	+		LRK55_RS15635	0.35	-1.0
3,424,564	+		LRK55_RS15635	0.35	-0.1
3,424,564	+		LRK55_RS15635	0.35	+1.1
3,424,565	-		LRK55_RS15635	0.35	-2.8
3,424,565	-		LRK55_RS15635	0.35	-2.0
3,424,565	-		LRK55_RS15635	0.35	-0.5
3,424,565	-		LRK55_RS15635	0.35	+1.0
3,424,565	-		LRK55_RS15635	0.35	-1.4
3,424,607	+		LRK55_RS15635	0.39	-0.4
3,424,608	-		LRK55_RS15635	0.39	-1.6
3,424,608	-		LRK55_RS15635	0.39	-2.0
3,424,608	-		LRK55_RS15635	0.39	+0.8
3,424,608	-		LRK55_RS15635	0.39	-2.2
3,424,608	-		LRK55_RS15635	0.39	+0.9
3,424,760	-		LRK55_RS15635	0.54	-2.7
3,424,833	-		LRK55_RS15635	0.61	+1.4
3,424,977	+		LRK55_RS15635	0.75	+0.9
3,424,977	+		LRK55_RS15635	0.75	-1.6
3,424,977	+		LRK55_RS15635	0.75	+0.8
3,424,977	+		LRK55_RS15635	0.75	-0.6
3,424,977	+		LRK55_RS15635	0.75	+0.2
3,424,978	-		LRK55_RS15635	0.75	-1.0
3,424,978	-		LRK55_RS15635	0.75	+2.3
3,424,978	-		LRK55_RS15635	0.75	-0.1
3,424,978	-		LRK55_RS15635	0.75	+1.5