Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15470

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS15465 and LRK55_RS15470 overlap by 4 nucleotidesLRK55_RS15470 and LRK55_RS15475 are separated by 140 nucleotides LRK55_RS15465: LRK55_RS15465 - glycine betaine ABC transporter substrate-binding protein, at 3,387,581 to 3,389,089 _RS15465 LRK55_RS15470: LRK55_RS15470 - ATP-binding cassette domain-containing protein, at 3,389,086 to 3,389,853 _RS15470 LRK55_RS15475: LRK55_RS15475 - GGDEF domain-containing protein, at 3,389,994 to 3,391,376 _RS15475 Position (kb) 3389 3390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3388.130 kb on + strand, within LRK55_RS15465at 3388.131 kb on - strand, within LRK55_RS15465at 3388.199 kb on + strand, within LRK55_RS15465at 3388.200 kb on - strand, within LRK55_RS15465at 3388.380 kb on + strand, within LRK55_RS15465at 3388.380 kb on + strand, within LRK55_RS15465at 3388.386 kb on + strand, within LRK55_RS15465at 3388.386 kb on + strand, within LRK55_RS15465at 3388.386 kb on + strand, within LRK55_RS15465at 3388.386 kb on + strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.387 kb on - strand, within LRK55_RS15465at 3388.398 kb on + strand, within LRK55_RS15465at 3388.398 kb on + strand, within LRK55_RS15465at 3388.398 kb on + strand, within LRK55_RS15465at 3388.398 kb on + strand, within LRK55_RS15465at 3388.410 kb on + strand, within LRK55_RS15465at 3388.411 kb on - strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.443 kb on + strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.444 kb on - strand, within LRK55_RS15465at 3388.446 kb on + strand, within LRK55_RS15465at 3388.447 kb on - strand, within LRK55_RS15465at 3388.470 kb on + strand, within LRK55_RS15465at 3388.470 kb on + strand, within LRK55_RS15465at 3388.470 kb on + strand, within LRK55_RS15465at 3388.470 kb on + strand, within LRK55_RS15465at 3388.471 kb on - strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.704 kb on + strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.705 kb on - strand, within LRK55_RS15465at 3388.816 kb on + strand, within LRK55_RS15465at 3388.817 kb on - strand, within LRK55_RS15465at 3388.830 kb on + strand, within LRK55_RS15465at 3388.830 kb on + strand, within LRK55_RS15465at 3388.830 kb on + strand, within LRK55_RS15465at 3388.830 kb on + strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.831 kb on - strand, within LRK55_RS15465at 3388.839 kb on + strand, within LRK55_RS15465at 3388.907 kb on + strand, within LRK55_RS15465at 3388.908 kb on - strand, within LRK55_RS15465at 3388.908 kb on - strand, within LRK55_RS15465at 3389.588 kb on + strand, within LRK55_RS15470at 3389.588 kb on + strand, within LRK55_RS15470at 3389.589 kb on - strand, within LRK55_RS15470at 3389.589 kb on - strand, within LRK55_RS15470at 3389.589 kb on - strand, within LRK55_RS15470at 3389.948 kb on + strandat 3389.948 kb on + strandat 3389.949 kb on - strandat 3389.949 kb on - strandat 3389.949 kb on - strandat 3389.949 kb on - strandat 3389.995 kb on + strandat 3389.995 kb on + strandat 3389.996 kb on - strandat 3389.996 kb on - strandat 3389.996 kb on - strandat 3390.009 kb on + strandat 3390.046 kb on + strandat 3390.046 kb on + strandat 3390.046 kb on + strandat 3390.046 kb on + strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.047 kb on - strandat 3390.104 kb on - strandat 3390.382 kb on + strand, within LRK55_RS15475at 3390.382 kb on + strand, within LRK55_RS15475at 3390.382 kb on + strand, within LRK55_RS15475at 3390.382 kb on + strand, within LRK55_RS15475at 3390.382 kb on + strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.383 kb on - strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.496 kb on + strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.497 kb on - strand, within LRK55_RS15475at 3390.586 kb on + strand, within LRK55_RS15475at 3390.586 kb on + strand, within LRK55_RS15475at 3390.586 kb on + strand, within LRK55_RS15475at 3390.587 kb on - strand, within LRK55_RS15475at 3390.587 kb on - strand, within LRK55_RS15475at 3390.604 kb on + strand, within LRK55_RS15475at 3390.604 kb on + strand, within LRK55_RS15475at 3390.604 kb on + strand, within LRK55_RS15475at 3390.604 kb on + strand, within LRK55_RS15475at 3390.605 kb on - strand, within LRK55_RS15475at 3390.605 kb on - strand, within LRK55_RS15475at 3390.605 kb on - strand, within LRK55_RS15475at 3390.829 kb on + strand, within LRK55_RS15475at 3390.829 kb on + strand, within LRK55_RS15475at 3390.830 kb on - strand, within LRK55_RS15475at 3390.830 kb on - strand, within LRK55_RS15475at 3390.830 kb on - strand, within LRK55_RS15475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
3,388,130 + LRK55_RS15465 0.36 +1.3
3,388,131 - LRK55_RS15465 0.36 +0.4
3,388,199 + LRK55_RS15465 0.41 -0.1
3,388,200 - LRK55_RS15465 0.41 +0.2
3,388,380 + LRK55_RS15465 0.53 -3.4
3,388,380 + LRK55_RS15465 0.53 -0.3
3,388,386 + LRK55_RS15465 0.53 +0.8
3,388,386 + LRK55_RS15465 0.53 +0.8
3,388,386 + LRK55_RS15465 0.53 +1.2
3,388,386 + LRK55_RS15465 0.53 +0.3
3,388,387 - LRK55_RS15465 0.53 +0.1
3,388,387 - LRK55_RS15465 0.53 -0.2
3,388,387 - LRK55_RS15465 0.53 -3.7
3,388,387 - LRK55_RS15465 0.53 +1.1
3,388,387 - LRK55_RS15465 0.53 +1.2
3,388,387 - LRK55_RS15465 0.53 +1.0
3,388,387 - LRK55_RS15465 0.53 +0.4
3,388,387 - LRK55_RS15465 0.53 +0.2
3,388,387 - LRK55_RS15465 0.53 -0.2
3,388,398 + LRK55_RS15465 0.54 -0.1
3,388,398 + LRK55_RS15465 0.54 +0.3
3,388,398 + LRK55_RS15465 0.54 +0.5
3,388,398 + LRK55_RS15465 0.54 -0.7
3,388,410 + LRK55_RS15465 0.55 +0.7
3,388,411 - LRK55_RS15465 0.55 -3.5
3,388,443 + LRK55_RS15465 0.57 -2.0
3,388,443 + LRK55_RS15465 0.57 +0.9
3,388,443 + LRK55_RS15465 0.57 -0.3
3,388,443 + LRK55_RS15465 0.57 -0.6
3,388,443 + LRK55_RS15465 0.57 +1.4
3,388,443 + LRK55_RS15465 0.57 +0.1
3,388,443 + LRK55_RS15465 0.57 -0.7
3,388,443 + LRK55_RS15465 0.57 +2.2
3,388,443 + LRK55_RS15465 0.57 +0.3
3,388,443 + LRK55_RS15465 0.57 +0.4
3,388,444 - LRK55_RS15465 0.57 -0.3
3,388,444 - LRK55_RS15465 0.57 +0.8
3,388,444 - LRK55_RS15465 0.57 -2.0
3,388,444 - LRK55_RS15465 0.57 +0.6
3,388,444 - LRK55_RS15465 0.57 -0.5
3,388,444 - LRK55_RS15465 0.57 -1.0
3,388,446 + LRK55_RS15465 0.57 -0.7
3,388,447 - LRK55_RS15465 0.57 +0.9
3,388,470 + LRK55_RS15465 0.59 -0.4
3,388,470 + LRK55_RS15465 0.59 -1.7
3,388,470 + LRK55_RS15465 0.59 -0.8
3,388,470 + LRK55_RS15465 0.59 +1.2
3,388,471 - LRK55_RS15465 0.59 +0.9
3,388,704 + LRK55_RS15465 0.74 +0.3
3,388,704 + LRK55_RS15465 0.74 +0.5
3,388,704 + LRK55_RS15465 0.74 -3.2
3,388,704 + LRK55_RS15465 0.74 +0.2
3,388,704 + LRK55_RS15465 0.74 +0.3
3,388,704 + LRK55_RS15465 0.74 +1.5
3,388,704 + LRK55_RS15465 0.74 -2.3
3,388,704 + LRK55_RS15465 0.74 +0.9
3,388,704 + LRK55_RS15465 0.74 +0.1
3,388,704 + LRK55_RS15465 0.74 -0.4
3,388,704 + LRK55_RS15465 0.74 -2.7
3,388,704 + LRK55_RS15465 0.74 -0.2
3,388,704 + LRK55_RS15465 0.74 -0.4
3,388,705 - LRK55_RS15465 0.74 -2.6
3,388,705 - LRK55_RS15465 0.74 -0.8
3,388,705 - LRK55_RS15465 0.74 -2.7
3,388,705 - LRK55_RS15465 0.74 -0.7
3,388,705 - LRK55_RS15465 0.74 +1.1
3,388,705 - LRK55_RS15465 0.74 +0.4
3,388,705 - LRK55_RS15465 0.74 -0.5
3,388,705 - LRK55_RS15465 0.74 -1.6
3,388,705 - LRK55_RS15465 0.74 -2.7
3,388,705 - LRK55_RS15465 0.74 +0.8
3,388,705 - LRK55_RS15465 0.74 -0.0
3,388,816 + LRK55_RS15465 0.82 -3.4
3,388,817 - LRK55_RS15465 0.82 -0.2
3,388,830 + LRK55_RS15465 0.83 +0.7
3,388,830 + LRK55_RS15465 0.83 +4.9
3,388,830 + LRK55_RS15465 0.83 +0.5
3,388,830 + LRK55_RS15465 0.83 -1.5
3,388,831 - LRK55_RS15465 0.83 -2.1
3,388,831 - LRK55_RS15465 0.83 +0.3
3,388,831 - LRK55_RS15465 0.83 -2.4
3,388,831 - LRK55_RS15465 0.83 +1.1
3,388,831 - LRK55_RS15465 0.83 +0.6
3,388,831 - LRK55_RS15465 0.83 -0.7
3,388,839 + LRK55_RS15465 0.83 +0.9
3,388,907 + LRK55_RS15465 0.88 -0.1
3,388,908 - LRK55_RS15465 0.88 -1.2
3,388,908 - LRK55_RS15465 0.88 -3.9
3,389,588 + LRK55_RS15470 0.65 +2.8
3,389,588 + LRK55_RS15470 0.65 +0.6
3,389,589 - LRK55_RS15470 0.65 +0.1
3,389,589 - LRK55_RS15470 0.65 +0.8
3,389,589 - LRK55_RS15470 0.65 -0.2
3,389,948 + -0.8
3,389,948 + +0.1
3,389,949 - +0.1
3,389,949 - +0.6
3,389,949 - -2.2
3,389,949 - -0.5
3,389,995 + -0.7
3,389,995 + -0.7
3,389,996 - -1.2
3,389,996 - +1.1
3,389,996 - -0.6
3,390,009 + -0.1
3,390,046 + -0.1
3,390,046 + +1.5
3,390,046 + -0.2
3,390,046 + +0.2
3,390,047 - +0.0
3,390,047 - -1.2
3,390,047 - -0.5
3,390,047 - -0.6
3,390,047 - +0.2
3,390,047 - +0.7
3,390,047 - -1.8
3,390,047 - +0.6
3,390,104 - +0.6
3,390,382 + LRK55_RS15475 0.28 -0.1
3,390,382 + LRK55_RS15475 0.28 +1.6
3,390,382 + LRK55_RS15475 0.28 -1.1
3,390,382 + LRK55_RS15475 0.28 +1.2
3,390,382 + LRK55_RS15475 0.28 -0.3
3,390,383 - LRK55_RS15475 0.28 -1.4
3,390,383 - LRK55_RS15475 0.28 +1.2
3,390,383 - LRK55_RS15475 0.28 +2.0
3,390,383 - LRK55_RS15475 0.28 -0.1
3,390,383 - LRK55_RS15475 0.28 -1.5
3,390,383 - LRK55_RS15475 0.28 -0.2
3,390,383 - LRK55_RS15475 0.28 -0.5
3,390,383 - LRK55_RS15475 0.28 -0.1
3,390,496 + LRK55_RS15475 0.36 +0.1
3,390,496 + LRK55_RS15475 0.36 +1.2
3,390,496 + LRK55_RS15475 0.36 +1.6
3,390,496 + LRK55_RS15475 0.36 +1.8
3,390,496 + LRK55_RS15475 0.36 -2.8
3,390,496 + LRK55_RS15475 0.36 +0.2
3,390,496 + LRK55_RS15475 0.36 +1.2
3,390,496 + LRK55_RS15475 0.36 -0.2
3,390,497 - LRK55_RS15475 0.36 +0.2
3,390,497 - LRK55_RS15475 0.36 +1.6
3,390,497 - LRK55_RS15475 0.36 -2.1
3,390,497 - LRK55_RS15475 0.36 +0.5
3,390,497 - LRK55_RS15475 0.36 +0.2
3,390,497 - LRK55_RS15475 0.36 -0.7
3,390,497 - LRK55_RS15475 0.36 +1.2
3,390,497 - LRK55_RS15475 0.36 -0.1
3,390,497 - LRK55_RS15475 0.36 -0.4
3,390,497 - LRK55_RS15475 0.36 +0.2
3,390,497 - LRK55_RS15475 0.36 +2.2
3,390,497 - LRK55_RS15475 0.36 +0.1
3,390,586 + LRK55_RS15475 0.43 +0.0
3,390,586 + LRK55_RS15475 0.43 -0.5
3,390,586 + LRK55_RS15475 0.43 +0.6
3,390,587 - LRK55_RS15475 0.43 +0.7
3,390,587 - LRK55_RS15475 0.43 -1.1
3,390,604 + LRK55_RS15475 0.44 +0.0
3,390,604 + LRK55_RS15475 0.44 +0.1
3,390,604 + LRK55_RS15475 0.44 +2.8
3,390,604 + LRK55_RS15475 0.44 +0.1
3,390,605 - LRK55_RS15475 0.44 -0.6
3,390,605 - LRK55_RS15475 0.44 +3.3
3,390,605 - LRK55_RS15475 0.44 +2.8
3,390,829 + LRK55_RS15475 0.60 +1.9
3,390,829 + LRK55_RS15475 0.60 -2.6
3,390,830 - LRK55_RS15475 0.60 -0.3
3,390,830 - LRK55_RS15475 0.60 +0.2
3,390,830 - LRK55_RS15475 0.60 +1.3

Or see this region's nucleotide sequence