Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15130

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,323,066	+		LRK55_RS15125	0.57	+0.5
3,323,066	+		LRK55_RS15125	0.57	-0.0
3,323,067	-		LRK55_RS15125	0.58	+1.3
3,323,442	+		LRK55_RS15125	0.81	+0.9
3,323,442	+		LRK55_RS15125	0.81	+0.8
3,323,675	+				+0.7
3,323,675	+				+0.1
3,323,675	+				+1.6
3,323,675	+				-0.8
3,323,675	+				+1.1
3,323,675	+				-2.4
3,323,676	-				-2.0
3,323,676	-				-0.3
3,323,676	-				-0.8
3,323,676	-				-1.2
3,323,676	-				+0.2
3,323,699	+				+1.1
3,323,699	+				+1.6
3,323,699	+				+1.8
3,323,699	+				+0.1
3,323,700	-				+1.1
3,323,700	-				+0.7
3,323,700	-				+0.7
3,323,700	-				-0.1
3,323,767	+				-0.0
3,323,767	+				+0.8
3,323,767	+				-0.3
3,323,767	+				-0.1
3,323,767	+				-1.0
3,323,768	-				-3.3
3,323,768	-				+3.1
3,323,768	-				-1.7
3,323,866	+				+0.8
3,323,866	+				-0.5
3,323,866	+				+1.0
3,323,866	+				+0.6
3,323,866	+				-3.4
3,323,866	+				-2.7
3,323,867	-				+1.0
3,323,869	+				-1.8
3,323,869	+				-2.1
3,323,869	+				-2.0
3,323,869	+				+0.0
3,323,869	+				-0.6
3,323,869	+				-0.7
3,323,870	-				-1.1
3,323,870	-				+0.3
3,323,908	+		LRK55_RS15130	0.10	-1.4
3,323,908	+		LRK55_RS15130	0.10	+1.5
3,323,908	+		LRK55_RS15130	0.10	-0.3
3,323,909	-		LRK55_RS15130	0.10	+1.2
3,323,911	+		LRK55_RS15130	0.10	-1.8
3,323,911	+		LRK55_RS15130	0.10	-2.3
3,323,911	+		LRK55_RS15130	0.10	+0.5
3,323,911	+		LRK55_RS15130	0.10	-3.3
3,323,911	+		LRK55_RS15130	0.10	-0.5
3,323,911	+		LRK55_RS15130	0.10	-0.6
3,323,912	-		LRK55_RS15130	0.10	-1.0
3,323,912	-		LRK55_RS15130	0.10	-0.9
3,323,912	-		LRK55_RS15130	0.10	-0.7
3,324,154	+		LRK55_RS15130	0.26	-1.3
3,324,155	-		LRK55_RS15130	0.26	-0.3
3,324,271	+		LRK55_RS15130	0.33	-2.1
3,324,271	+		LRK55_RS15130	0.33	-3.1
3,324,271	+		LRK55_RS15130	0.33	+0.3
3,324,271	+		LRK55_RS15130	0.33	-1.6
3,324,271	+		LRK55_RS15130	0.33	+1.2
3,324,271	+		LRK55_RS15130	0.33	+1.5
3,324,271	+		LRK55_RS15130	0.33	-1.1
3,324,272	-		LRK55_RS15130	0.33	+2.3
3,324,272	-		LRK55_RS15130	0.33	+0.3
3,324,272	-		LRK55_RS15130	0.33	+0.5
3,324,272	-		LRK55_RS15130	0.33	+1.2
3,324,272	-		LRK55_RS15130	0.33	-0.5
3,324,272	-		LRK55_RS15130	0.33	-0.3
3,324,272	-		LRK55_RS15130	0.33	+0.4
3,324,272	-		LRK55_RS15130	0.33	+0.1
3,324,272	-		LRK55_RS15130	0.33	+0.2
3,324,301	+		LRK55_RS15130	0.35	+0.3
3,324,301	+		LRK55_RS15130	0.35	-2.3
3,324,302	-		LRK55_RS15130	0.35	-0.0
3,324,302	-		LRK55_RS15130	0.35	+0.6
3,324,302	-		LRK55_RS15130	0.35	+0.1
3,324,316	+		LRK55_RS15130	0.36	+2.1
3,324,316	+		LRK55_RS15130	0.36	-1.7
3,324,397	+		LRK55_RS15130	0.41	-2.1
3,324,397	+		LRK55_RS15130	0.41	+0.0
3,324,397	+		LRK55_RS15130	0.41	-0.3
3,324,550	+		LRK55_RS15130	0.51	-0.3
3,324,551	-		LRK55_RS15130	0.51	+2.6
3,324,551	-		LRK55_RS15130	0.51	-1.3
3,324,551	-		LRK55_RS15130	0.51	-1.9
3,324,551	-		LRK55_RS15130	0.51	+0.9
3,324,551	-		LRK55_RS15130	0.51	-0.3
3,324,558	+		LRK55_RS15130	0.52	-0.1
3,324,589	+		LRK55_RS15130	0.54	-1.3
3,324,589	+		LRK55_RS15130	0.54	-1.3
3,324,589	+		LRK55_RS15130	0.54	-0.3
3,324,589	+		LRK55_RS15130	0.54	-2.3
3,324,590	-		LRK55_RS15130	0.54	-2.8
3,324,590	-		LRK55_RS15130	0.54	-1.5
3,324,590	-		LRK55_RS15130	0.54	+0.2
3,324,590	-		LRK55_RS15130	0.54	-0.3
3,324,642	+		LRK55_RS15130	0.57	+0.7
3,324,664	+		LRK55_RS15130	0.58	-0.0
3,324,664	+		LRK55_RS15130	0.58	-0.0
3,324,665	-		LRK55_RS15130	0.59	-1.4
3,324,817	+		LRK55_RS15130	0.68	+0.1
3,324,817	+		LRK55_RS15130	0.68	-0.1
3,324,817	+		LRK55_RS15130	0.68	+0.6
3,324,818	-		LRK55_RS15130	0.68	+0.2
3,325,081	+		LRK55_RS15130	0.85	-2.3
3,325,082	-		LRK55_RS15130	0.85	+1.7
3,325,082	-		LRK55_RS15130	0.85	-2.0
3,325,216	+				+0.8
3,325,217	-				+0.1
3,325,217	-				-0.6
3,325,217	-				-1.6
3,325,217	-				-0.5
3,325,217	-				+0.2
3,325,217	-				+0.8
3,325,228	+				-2.2
3,325,229	-				+0.7
3,325,229	-				+0.2
3,325,229	-				-0.3
3,325,229	-				+0.3
3,325,240	+				-0.3
3,325,240	+				-0.4
3,325,240	+				-1.7
3,325,240	+				+1.5
3,325,240	+				+1.5
3,325,240	+				+0.5
3,325,241	-				-0.2
3,325,241	-				-0.1
3,325,241	-				+1.6
3,325,241	-				-0.2
3,325,241	-				+1.7
3,325,241	-				-0.7
3,325,241	-				+0.8
3,325,241	-				+1.5
3,325,252	+				-0.7
3,325,252	+				-1.5
3,325,252	+				+0.5
3,325,253	-				-0.0
3,325,253	-				-1.3
3,325,253	-				-2.1
3,325,253	-				-1.5
3,325,253	-				-3.3
3,325,492	+		LRK55_RS15135	0.14	-2.0
3,325,492	+		LRK55_RS15135	0.14	-2.5
3,325,531	+		LRK55_RS15135	0.17	+1.9
3,325,531	+		LRK55_RS15135	0.17	+1.3
3,325,573	+		LRK55_RS15135	0.21	-0.8
3,325,573	+		LRK55_RS15135	0.21	+1.3
3,325,573	+		LRK55_RS15135	0.21	-1.4
3,325,573	+		LRK55_RS15135	0.21	+0.6
3,325,573	+		LRK55_RS15135	0.21	-0.6
3,325,574	-		LRK55_RS15135	0.21	-0.1
3,325,574	-		LRK55_RS15135	0.21	-0.4
3,325,574	-		LRK55_RS15135	0.21	-0.1
3,325,574	-		LRK55_RS15135	0.21	+1.1
3,325,574	-		LRK55_RS15135	0.21	-0.3
3,325,574	-		LRK55_RS15135	0.21	-1.5
3,325,574	-		LRK55_RS15135	0.21	+1.8
3,325,574	-		LRK55_RS15135	0.21	+0.5
3,325,574	-		LRK55_RS15135	0.21	+0.3
3,325,574	-		LRK55_RS15135	0.21	+0.4
3,325,579	+		LRK55_RS15135	0.21	-1.3
3,325,579	+		LRK55_RS15135	0.21	+0.4
3,325,579	+		LRK55_RS15135	0.21	-0.2
3,325,579	+		LRK55_RS15135	0.21	+1.4
3,325,580	-		LRK55_RS15135	0.21	+0.1
3,325,678	+		LRK55_RS15135	0.30	-1.5
3,325,678	+		LRK55_RS15135	0.30	-3.3
3,325,678	+		LRK55_RS15135	0.30	+1.1
3,325,678	+		LRK55_RS15135	0.30	-1.6
3,325,679	-		LRK55_RS15135	0.30	+0.8
3,325,679	-		LRK55_RS15135	0.30	+1.0
3,325,679	-		LRK55_RS15135	0.30	-0.4
3,325,681	+		LRK55_RS15135	0.30	+0.6
3,325,681	+		LRK55_RS15135	0.30	-1.6
3,325,681	+		LRK55_RS15135	0.30	-0.3
3,325,681	+		LRK55_RS15135	0.30	+0.2
3,325,682	-		LRK55_RS15135	0.30	-0.4
3,325,682	-		LRK55_RS15135	0.30	+1.0
3,325,789	+		LRK55_RS15135	0.39	-0.2
3,325,790	-		LRK55_RS15135	0.39	+1.0
3,325,790	-		LRK55_RS15135	0.39	+0.2
3,325,790	-		LRK55_RS15135	0.39	-0.8
3,325,790	-		LRK55_RS15135	0.39	-2.8
3,325,795	+		LRK55_RS15135	0.40	-1.7
3,325,795	+		LRK55_RS15135	0.40	+0.3
3,325,795	+		LRK55_RS15135	0.40	-1.3
3,325,796	-		LRK55_RS15135	0.40	+1.0
3,325,900	+		LRK55_RS15135	0.48	-0.0
3,325,930	+		LRK55_RS15135	0.51	+1.0
3,325,931	-		LRK55_RS15135	0.51	-0.4
3,325,931	-		LRK55_RS15135	0.51	-0.5
3,325,931	-		LRK55_RS15135	0.51	-0.4
3,325,931	-		LRK55_RS15135	0.51	-0.7
3,325,931	-		LRK55_RS15135	0.51	-2.0
3,326,020	+		LRK55_RS15135	0.59	-1.7
3,326,020	+		LRK55_RS15135	0.59	-1.2
3,326,020	+		LRK55_RS15135	0.59	+0.2
3,326,020	+		LRK55_RS15135	0.59	+0.4
3,326,021	-		LRK55_RS15135	0.59	+0.1
3,326,021	-		LRK55_RS15135	0.59	-1.2
3,326,021	-		LRK55_RS15135	0.59	+0.7
3,326,021	-		LRK55_RS15135	0.59	-1.3
3,326,021	-		LRK55_RS15135	0.59	-1.4
3,326,173	+		LRK55_RS15135	0.72	-0.4
3,326,173	+		LRK55_RS15135	0.72	-0.3
3,326,173	+		LRK55_RS15135	0.72	-2.3
3,326,173	+		LRK55_RS15135	0.72	+0.6
3,326,173	+		LRK55_RS15135	0.72	-0.3
3,326,173	+		LRK55_RS15135	0.72	+0.3
3,326,173	+		LRK55_RS15135	0.72	-2.5
3,326,173	+		LRK55_RS15135	0.72	-1.9
3,326,173	+		LRK55_RS15135	0.72	+0.7
3,326,173	+		LRK55_RS15135	0.72	-0.1
3,326,173	+		LRK55_RS15135	0.72	-1.0
3,326,173	+		LRK55_RS15135	0.72	+1.6
3,326,173	+		LRK55_RS15135	0.72	+2.2
3,326,173	+		LRK55_RS15135	0.72	+0.5
3,326,173	+		LRK55_RS15135	0.72	-0.3
3,326,173	+		LRK55_RS15135	0.72	+2.2
3,326,173	+		LRK55_RS15135	0.72	-1.1
3,326,173	+		LRK55_RS15135	0.72	+1.7
3,326,174	-		LRK55_RS15135	0.72	-1.3
3,326,174	-		LRK55_RS15135	0.72	+0.1
3,326,174	-		LRK55_RS15135	0.72	+0.4
3,326,174	-		LRK55_RS15135	0.72	-2.8
3,326,174	-		LRK55_RS15135	0.72	-0.1
3,326,174	-		LRK55_RS15135	0.72	+0.2
3,326,174	-		LRK55_RS15135	0.72	-0.0
3,326,174	-		LRK55_RS15135	0.72	+0.6
3,326,174	-		LRK55_RS15135	0.72	-0.3
3,326,174	-		LRK55_RS15135	0.72	+0.3
3,326,174	-		LRK55_RS15135	0.72	+0.0
3,326,174	-		LRK55_RS15135	0.72	-2.4
3,326,174	-		LRK55_RS15135	0.72	-0.4
3,326,174	-		LRK55_RS15135	0.72	+0.2
3,326,174	-		LRK55_RS15135	0.72	+0.0
3,326,174	-		LRK55_RS15135	0.72	-0.1
3,326,174	-		LRK55_RS15135	0.72	+0.4
3,326,174	-		LRK55_RS15135	0.72	+0.3
3,326,174	-		LRK55_RS15135	0.72	-0.2
3,326,174	-		LRK55_RS15135	0.72	+0.3
3,326,174	-		LRK55_RS15135	0.72	+1.0
3,326,174	-		LRK55_RS15135	0.72	+0.9