Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14915

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,277,219	+		LRK55_RS14905	0.88	+1.2
3,277,265	+				+1.6
3,277,265	+				-0.5
3,277,265	+				-0.5
3,277,265	+				+1.7
3,277,266	-				+1.7
3,277,266	-				+0.2
3,277,266	-				+1.1
3,277,266	-				-0.5
3,277,289	+				-1.1
3,277,290	-				+0.0
3,277,426	+				+0.1
3,277,426	+				-0.4
3,277,426	+				-2.1
3,277,427	-				-0.1
3,277,427	-				-0.7
3,277,660	+		LRK55_RS14910	0.16	+0.7
3,277,660	+		LRK55_RS14910	0.16	+2.1
3,277,660	+		LRK55_RS14910	0.16	-0.6
3,277,660	+		LRK55_RS14910	0.16	+0.5
3,277,660	+		LRK55_RS14910	0.16	+1.2
3,277,660	+		LRK55_RS14910	0.16	+0.3
3,277,660	+		LRK55_RS14910	0.16	-0.1
3,277,661	-		LRK55_RS14910	0.16	-0.1
3,277,661	-		LRK55_RS14910	0.16	-2.3
3,277,661	-		LRK55_RS14910	0.16	-1.3
3,277,732	+		LRK55_RS14910	0.31	-2.1
3,277,732	+		LRK55_RS14910	0.31	-0.5
3,277,732	+		LRK55_RS14910	0.31	-0.8
3,277,732	+		LRK55_RS14910	0.31	-0.4
3,277,733	-		LRK55_RS14910	0.31	-1.7
3,277,733	-		LRK55_RS14910	0.31	+0.1
3,277,733	-		LRK55_RS14910	0.31	-0.3
3,277,733	-		LRK55_RS14910	0.31	-1.0
3,277,733	-		LRK55_RS14910	0.31	-0.5
3,277,846	+		LRK55_RS14910	0.53	+0.6
3,277,846	+		LRK55_RS14910	0.53	+1.3
3,277,846	+		LRK55_RS14910	0.53	+0.4
3,277,846	+		LRK55_RS14910	0.53	-0.6
3,277,846	+		LRK55_RS14910	0.53	+0.9
3,277,846	+		LRK55_RS14910	0.53	+1.4
3,277,846	+		LRK55_RS14910	0.53	-1.8
3,277,846	+		LRK55_RS14910	0.53	+0.7
3,277,846	+		LRK55_RS14910	0.53	-0.3
3,277,846	+		LRK55_RS14910	0.53	+1.5
3,277,846	+		LRK55_RS14910	0.53	+0.2
3,277,847	-		LRK55_RS14910	0.53	-1.0
3,277,847	-		LRK55_RS14910	0.53	+0.4
3,277,847	-		LRK55_RS14910	0.53	+0.3
3,277,981	+		LRK55_RS14910	0.80	-0.4
3,277,981	+		LRK55_RS14910	0.80	-1.0
3,277,982	-		LRK55_RS14910	0.80	+0.9
3,277,982	-		LRK55_RS14910	0.80	-3.1
3,277,982	-		LRK55_RS14910	0.80	-0.1
3,277,982	-		LRK55_RS14910	0.80	-0.0
3,278,014	+		LRK55_RS14910	0.87	-1.8
3,278,017	+		LRK55_RS14910	0.87	+1.7
3,278,017	+		LRK55_RS14910	0.87	+0.0
3,278,018	-		LRK55_RS14910	0.88	-0.2
3,278,018	-		LRK55_RS14910	0.88	+0.0
3,278,018	-		LRK55_RS14910	0.88	+1.7
3,278,044	+				+1.3
3,278,044	+				-3.5
3,278,044	+				+2.4
3,278,044	+				-0.9
3,278,044	+				+1.2
3,278,044	+				-3.1
3,278,044	+				-1.3
3,278,044	+				+1.1
3,278,044	+				-1.7
3,278,044	+				-1.3
3,278,044	+				-0.2
3,278,044	+				+1.5
3,278,044	+				-0.7
3,278,045	-				-0.1
3,278,045	-				+0.2
3,278,045	-				+0.1
3,278,077	+				+0.0
3,278,077	+				+2.1
3,278,164	+		LRK55_RS14915	0.14	+0.8
3,278,164	+		LRK55_RS14915	0.14	-0.3
3,278,164	+		LRK55_RS14915	0.14	-0.2
3,278,165	+		LRK55_RS14915	0.14	+0.2
3,278,165	-		LRK55_RS14915	0.14	+1.4
3,278,519	+		LRK55_RS14915	0.69	+0.5
3,278,519	+		LRK55_RS14915	0.69	+2.4
3,278,520	-		LRK55_RS14915	0.69	-0.5
3,278,520	-		LRK55_RS14915	0.69	+0.3
3,278,813	+		LRK55_RS14920	0.20	-0.7
3,278,813	+		LRK55_RS14920	0.20	+0.0
3,278,813	+		LRK55_RS14920	0.20	+0.1
3,278,814	-		LRK55_RS14920	0.20	-2.0
3,278,933	+		LRK55_RS14920	0.46	-1.3
3,278,933	+		LRK55_RS14920	0.46	-1.7
3,278,933	+		LRK55_RS14920	0.46	+1.0
3,278,934	-		LRK55_RS14920	0.46	-0.5
3,278,992	+		LRK55_RS14920	0.58	-0.2
3,278,992	+		LRK55_RS14920	0.58	+0.3
3,278,992	+		LRK55_RS14920	0.58	+1.6
3,278,993	-		LRK55_RS14920	0.59	+0.3
3,278,993	-		LRK55_RS14920	0.59	+1.3
3,278,993	-		LRK55_RS14920	0.59	+2.2
3,278,993	-		LRK55_RS14920	0.59	-2.9
3,279,029	+		LRK55_RS14920	0.66	+0.5
3,279,030	-		LRK55_RS14920	0.67	-0.9
3,279,030	-		LRK55_RS14920	0.67	+0.3
3,279,030	-		LRK55_RS14920	0.67	-0.4
3,279,030	-		LRK55_RS14920	0.67	-0.7
3,279,030	-		LRK55_RS14920	0.67	+1.0
3,279,038	+		LRK55_RS14920	0.68	-2.8
3,279,038	+		LRK55_RS14920	0.68	-1.2
3,279,038	+		LRK55_RS14920	0.68	+0.6
3,279,038	+		LRK55_RS14920	0.68	+0.9
3,279,039	-		LRK55_RS14920	0.69	-0.6
3,279,039	-		LRK55_RS14920	0.69	+0.8
3,279,039	-		LRK55_RS14920	0.69	-0.2
3,279,039	-		LRK55_RS14920	0.69	-1.8
3,279,039	-		LRK55_RS14920	0.69	+0.4
3,279,039	-		LRK55_RS14920	0.69	-0.1
3,279,104	+		LRK55_RS14920	0.83	+2.3
3,279,104	+		LRK55_RS14920	0.83	-1.0
3,279,104	+		LRK55_RS14920	0.83	+1.6
3,279,104	+		LRK55_RS14920	0.83	+1.3
3,279,104	+		LRK55_RS14920	0.83	+1.3
3,279,104	+		LRK55_RS14920	0.83	+1.2
3,279,105	-		LRK55_RS14920	0.83	+2.7
3,279,105	-		LRK55_RS14920	0.83	-0.2
3,279,105	-		LRK55_RS14920	0.83	+0.8
3,279,105	-		LRK55_RS14920	0.83	-2.4
3,279,105	-		LRK55_RS14920	0.83	-1.8
3,279,217	+				-2.6
3,279,217	+				-1.1
3,279,217	+				+0.3
3,279,217	+				-0.6
3,279,217	+				-1.1
3,279,217	+				-1.0
3,279,217	+				-0.4
3,279,217	+				-1.5
3,279,218	-				-3.1
3,279,218	-				+0.8
3,279,218	-				+1.4
3,279,218	-				-0.5
3,279,218	-				-3.5
3,279,218	-				+0.9
3,279,218	-				-0.4
3,279,218	-				-0.9
3,279,218	-				-0.4
3,279,556	+		LRK55_RS14925	0.13	-3.8
3,279,556	+		LRK55_RS14925	0.13	-1.7
3,279,556	+		LRK55_RS14925	0.13	-2.1
3,279,556	+		LRK55_RS14925	0.13	-1.5
3,279,556	+		LRK55_RS14925	0.13	-3.5
3,279,556	+		LRK55_RS14925	0.13	-2.3
3,279,556	+		LRK55_RS14925	0.13	-2.8
3,279,556	+		LRK55_RS14925	0.13	-2.8
3,279,556	+		LRK55_RS14925	0.13	-1.8
3,279,557	-		LRK55_RS14925	0.13	-2.6
3,279,557	-		LRK55_RS14925	0.13	+0.3
3,279,557	-		LRK55_RS14925	0.13	-2.0
3,279,557	-		LRK55_RS14925	0.13	-2.6
3,279,557	-		LRK55_RS14925	0.13	-2.0
3,279,557	-		LRK55_RS14925	0.13	-3.3
3,279,557	-		LRK55_RS14925	0.13	-3.0
3,279,557	-		LRK55_RS14925	0.13	-3.4
3,279,658	+		LRK55_RS14925	0.16	+0.3
3,279,658	+		LRK55_RS14925	0.16	-1.0
3,279,659	-		LRK55_RS14925	0.16	-1.5
3,279,659	-		LRK55_RS14925	0.16	-1.5