Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14780

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,252,252	-		LRK55_RS14775	0.20	+1.2
3,252,296	+		LRK55_RS14775	0.25	-1.5
3,252,296	+		LRK55_RS14775	0.25	-1.7
3,252,297	-		LRK55_RS14775	0.25	-1.7
3,252,297	-		LRK55_RS14775	0.25	-2.6
3,252,297	-		LRK55_RS14775	0.25	-0.7
3,252,297	-		LRK55_RS14775	0.25	-0.7
3,252,297	-		LRK55_RS14775	0.25	-1.0
3,252,405	+		LRK55_RS14775	0.37	-2.4
3,252,405	+		LRK55_RS14775	0.37	+1.0
3,252,405	+		LRK55_RS14775	0.37	+1.1
3,252,405	+		LRK55_RS14775	0.37	+0.1
3,252,405	+		LRK55_RS14775	0.37	+0.0
3,252,406	-		LRK55_RS14775	0.37	+0.6
3,252,406	-		LRK55_RS14775	0.37	-0.0
3,252,406	-		LRK55_RS14775	0.37	+0.2
3,252,406	-		LRK55_RS14775	0.37	+0.7
3,252,406	-		LRK55_RS14775	0.37	-0.6
3,252,584	+		LRK55_RS14775	0.57	+1.2
3,252,584	+		LRK55_RS14775	0.57	-1.8
3,252,584	+		LRK55_RS14775	0.57	-1.7
3,252,585	-		LRK55_RS14775	0.57	+0.5
3,252,585	-		LRK55_RS14775	0.57	+2.2
3,252,653	+		LRK55_RS14775	0.65	+0.3
3,252,744	-		LRK55_RS14775	0.75	+2.3
3,252,914	+				-3.5
3,252,914	+				+0.7
3,253,091	+				-1.8
3,253,091	+				-3.8
3,253,091	+				+0.4
3,253,092	-				+1.3
3,253,092	-				+0.2
3,253,106	+				-0.6
3,253,106	+				+1.3
3,253,106	+				+0.5
3,253,106	+				+0.6
3,253,106	+				-2.0
3,253,106	+				+0.2
3,253,106	+				-0.3
3,253,107	-				-1.0
3,253,107	-				+0.8
3,253,107	-				-3.1
3,253,107	-				+0.3
3,253,107	-				+0.8
3,253,107	-				-2.8
3,253,107	-				+0.5
3,253,107	-				-0.3
3,253,107	-				+0.2
3,253,178	+		LRK55_RS14780	0.16	+0.5
3,253,179	-		LRK55_RS14780	0.16	+0.3
3,253,179	-		LRK55_RS14780	0.16	-0.1
3,253,179	-		LRK55_RS14780	0.16	+0.3
3,253,179	-		LRK55_RS14780	0.16	+1.2
3,253,281	+		LRK55_RS14780	0.27	+1.3
3,253,364	+		LRK55_RS14780	0.36	-2.3
3,253,364	+		LRK55_RS14780	0.36	+0.3
3,253,364	+		LRK55_RS14780	0.36	+0.3
3,253,364	+		LRK55_RS14780	0.36	+1.1
3,253,364	+		LRK55_RS14780	0.36	-1.2
3,253,364	+		LRK55_RS14780	0.36	-0.9
3,253,365	-		LRK55_RS14780	0.36	-2.2
3,253,365	-		LRK55_RS14780	0.36	-0.7
3,253,365	-		LRK55_RS14780	0.36	-0.3
3,253,365	-		LRK55_RS14780	0.36	-1.5
3,253,365	-		LRK55_RS14780	0.36	+1.0
3,253,365	-		LRK55_RS14780	0.36	+1.6
3,253,365	-		LRK55_RS14780	0.36	-1.7
3,253,365	-		LRK55_RS14780	0.36	+0.7
3,253,365	-		LRK55_RS14780	0.36	+0.9
3,253,365	-		LRK55_RS14780	0.36	+0.6
3,253,365	-		LRK55_RS14780	0.36	+0.8
3,253,365	-		LRK55_RS14780	0.36	-0.1
3,253,365	-		LRK55_RS14780	0.36	-1.1
3,253,470	-		LRK55_RS14780	0.47	+1.2
3,253,470	-		LRK55_RS14780	0.47	+0.8
3,253,591	+		LRK55_RS14780	0.60	+0.0
3,253,591	+		LRK55_RS14780	0.60	+1.0
3,253,591	+		LRK55_RS14780	0.60	+0.0
3,253,591	+		LRK55_RS14780	0.60	-0.3
3,253,592	-		LRK55_RS14780	0.60	-0.7
3,253,592	-		LRK55_RS14780	0.60	+1.0
3,253,592	-		LRK55_RS14780	0.60	+1.3
3,253,592	-		LRK55_RS14780	0.60	+1.3
3,253,623	-		LRK55_RS14780	0.63	+0.1
3,253,634	+		LRK55_RS14780	0.65	+0.3
3,253,634	+		LRK55_RS14780	0.65	-1.0
3,253,634	+		LRK55_RS14780	0.65	+0.2
3,253,634	+		LRK55_RS14780	0.65	-0.4
3,253,635	-		LRK55_RS14780	0.65	-0.9
3,253,635	-		LRK55_RS14780	0.65	+0.2
3,253,635	-		LRK55_RS14780	0.65	-0.9
3,253,635	-		LRK55_RS14780	0.65	+1.0
3,253,827	+		LRK55_RS14780	0.85	+0.3
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	+0.3
3,253,829	+		LRK55_RS14780	0.85	+0.6
3,253,829	+		LRK55_RS14780	0.85	+0.2
3,253,829	+		LRK55_RS14780	0.85	+0.7
3,253,829	+		LRK55_RS14780	0.85	-2.4
3,253,829	+		LRK55_RS14780	0.85	-0.1
3,253,829	+		LRK55_RS14780	0.85	+1.4
3,253,829	+		LRK55_RS14780	0.85	+0.8
3,253,829	+		LRK55_RS14780	0.85	-2.1
3,253,829	+		LRK55_RS14780	0.85	+0.6
3,253,829	+		LRK55_RS14780	0.85	+0.4
3,253,829	+		LRK55_RS14780	0.85	-0.3
3,253,829	+		LRK55_RS14780	0.85	-1.3
3,253,829	+		LRK55_RS14780	0.85	-3.3
3,253,829	+		LRK55_RS14780	0.85	+0.3
3,253,829	+		LRK55_RS14780	0.85	+1.3
3,253,829	+		LRK55_RS14780	0.85	-0.9
3,253,830	-		LRK55_RS14780	0.85	+0.6
3,253,830	-		LRK55_RS14780	0.85	-2.1
3,253,830	-		LRK55_RS14780	0.85	-1.5
3,253,830	-		LRK55_RS14780	0.85	-1.7
3,253,830	-		LRK55_RS14780	0.85	-0.8
3,253,830	-		LRK55_RS14780	0.85	+0.3
3,253,830	-		LRK55_RS14780	0.85	+0.8
3,253,830	-		LRK55_RS14780	0.85	-1.0
3,253,830	-		LRK55_RS14780	0.85	+0.7
3,253,830	-		LRK55_RS14780	0.85	+1.0
3,253,830	-		LRK55_RS14780	0.85	-3.0
3,253,830	-		LRK55_RS14780	0.85	+1.2
3,253,830	-		LRK55_RS14780	0.85	+0.7
3,253,830	-		LRK55_RS14780	0.85	+1.4
3,253,830	-		LRK55_RS14780	0.85	+0.6
3,253,830	-		LRK55_RS14780	0.85	-1.0
3,253,830	-		LRK55_RS14780	0.85	+1.4
3,253,830	-		LRK55_RS14780	0.85	-1.0
3,253,830	-		LRK55_RS14780	0.85	+0.8
3,253,830	-		LRK55_RS14780	0.85	+0.5
3,253,830	-		LRK55_RS14780	0.85	+1.0
3,253,830	-		LRK55_RS14780	0.85	-1.0
3,253,830	-		LRK55_RS14780	0.85	+0.2
3,253,830	-		LRK55_RS14780	0.85	+0.1
3,253,830	-		LRK55_RS14780	0.85	+0.9
3,253,844	+		LRK55_RS14780	0.87	+1.9
3,253,844	+		LRK55_RS14780	0.87	+1.4
3,253,844	+		LRK55_RS14780	0.87	-2.3
3,253,844	+		LRK55_RS14780	0.87	-0.2
3,253,844	+		LRK55_RS14780	0.87	-0.5
3,253,844	+		LRK55_RS14780	0.87	-0.1
3,253,844	+		LRK55_RS14780	0.87	-2.0
3,253,844	+		LRK55_RS14780	0.87	-0.5
3,253,844	+		LRK55_RS14780	0.87	+0.0
3,253,844	+		LRK55_RS14780	0.87	-0.7
3,253,844	+		LRK55_RS14780	0.87	-3.0
3,253,844	+		LRK55_RS14780	0.87	+2.0
3,253,845	-		LRK55_RS14780	0.87	+0.3
3,253,845	-		LRK55_RS14780	0.87	+0.7
3,253,845	-		LRK55_RS14780	0.87	-0.7
3,253,845	-		LRK55_RS14780	0.87	-2.6
3,253,845	-		LRK55_RS14780	0.87	-0.4
3,253,897	+				-0.2
3,253,898	-				-0.8
3,254,006	+				-0.4
3,254,023	+				-2.3
3,254,023	+				-3.1
3,254,023	+				+1.6
3,254,169	-				+0.8
3,254,169	-				-0.3
3,254,169	-				-0.7
3,254,267	+				-2.8
3,254,267	+				-0.3
3,254,267	+				-0.4
3,254,267	+				+0.4
3,254,268	-				+0.8
3,254,268	-				+0.3
3,254,297	+				-1.1
3,254,297	+				-0.3
3,254,298	-				-0.4
3,254,319	-		LRK55_RS14785	0.11	-0.3
3,254,417	+		LRK55_RS14785	0.18	-1.7
3,254,417	+		LRK55_RS14785	0.18	-1.0
3,254,918	+		LRK55_RS14785	0.54	-0.3
3,254,918	+		LRK55_RS14785	0.54	+2.5
3,254,919	-		LRK55_RS14785	0.54	-0.2
3,254,919	-		LRK55_RS14785	0.54	-0.3
3,254,919	-		LRK55_RS14785	0.54	-1.5
3,254,937	-		LRK55_RS14785	0.56	-2.8