Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS10840

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,391,472	-		LRK55_RS10835	0.51	-3.0
2,391,546	+		LRK55_RS10835	0.55	-0.3
2,391,595	+		LRK55_RS10835	0.58	-0.9
2,391,596	-		LRK55_RS10835	0.59	-0.4
2,391,738	+		LRK55_RS10835	0.68	+0.5
2,391,739	-		LRK55_RS10835	0.68	-0.0
2,391,866	+		LRK55_RS10835	0.76	-1.1
2,391,866	+		LRK55_RS10835	0.76	+0.3
2,391,866	+		LRK55_RS10835	0.76	-1.2
2,391,867	-		LRK55_RS10835	0.76	-1.6
2,391,867	-		LRK55_RS10835	0.76	+0.9
2,391,897	+		LRK55_RS10835	0.78	+0.7
2,391,898	-		LRK55_RS10835	0.78	-3.2
2,391,898	-		LRK55_RS10835	0.78	+0.7
2,391,898	-		LRK55_RS10835	0.78	+0.7
2,391,898	-		LRK55_RS10835	0.78	+0.4
2,391,898	-		LRK55_RS10835	0.78	-2.3
2,391,898	-		LRK55_RS10835	0.78	+1.5
2,391,898	-		LRK55_RS10835	0.78	+0.8
2,391,898	-		LRK55_RS10835	0.78	-1.6
2,391,898	-		LRK55_RS10835	0.78	+0.4
2,391,898	-		LRK55_RS10835	0.78	+0.0
2,391,964	-		LRK55_RS10835	0.82	-2.0
2,392,005	+		LRK55_RS10835	0.84	-0.8
2,392,005	+		LRK55_RS10835	0.84	-0.1
2,392,005	+		LRK55_RS10835	0.84	-1.1
2,392,005	+		LRK55_RS10835	0.84	+0.3
2,392,005	+		LRK55_RS10835	0.84	+0.2
2,392,005	+		LRK55_RS10835	0.84	-0.2
2,392,005	+		LRK55_RS10835	0.84	-0.3
2,392,005	+		LRK55_RS10835	0.84	+0.3
2,392,005	+		LRK55_RS10835	0.84	-1.5
2,392,005	+		LRK55_RS10835	0.84	+1.7
2,392,005	+		LRK55_RS10835	0.84	+1.6
2,392,006	-		LRK55_RS10835	0.85	+0.7
2,392,006	-		LRK55_RS10835	0.85	-1.7
2,392,006	-		LRK55_RS10835	0.85	+0.0
2,392,006	-		LRK55_RS10835	0.85	+0.5
2,392,006	-		LRK55_RS10835	0.85	-1.1
2,392,006	-		LRK55_RS10835	0.85	+0.6
2,392,006	-		LRK55_RS10835	0.85	+0.9
2,392,006	-		LRK55_RS10835	0.85	-3.7
2,392,006	-		LRK55_RS10835	0.85	+0.5
2,392,006	-		LRK55_RS10835	0.85	+0.5
2,392,269	+				+1.1
2,392,295	+				-1.7
2,392,295	+				-0.4
2,392,296	-				+2.4
2,392,298	+				-2.3
2,392,298	+				+0.9
2,392,298	+				+0.4
2,392,298	+				+0.1
2,392,298	+				+1.2
2,392,298	+				+0.4
2,392,298	+				+2.1
2,392,298	+				-2.0
2,392,298	+				+0.6
2,392,298	+				-2.1
2,392,298	+				-2.0
2,392,298	+				-1.1
2,392,298	+				+1.5
2,392,298	+				+0.5
2,392,299	-				-0.2
2,392,299	-				-2.2
2,392,299	-				+0.6
2,392,299	-				-0.2
2,392,299	-				-0.2
2,392,299	-				+0.5
2,392,299	-				+0.6
2,392,299	-				-0.1
2,392,299	-				-0.2
2,392,299	-				+0.4
2,392,299	-				+0.9
2,392,383	-				+1.4
2,392,465	-				+1.2
2,392,558	+		LRK55_RS10840	0.14	-0.8
2,392,558	+		LRK55_RS10840	0.14	+0.7
2,392,559	-		LRK55_RS10840	0.14	-0.6
2,392,770	+		LRK55_RS10840	0.30	+1.0
2,392,770	+		LRK55_RS10840	0.30	+1.0
2,392,770	+		LRK55_RS10840	0.30	-2.8
2,392,771	-		LRK55_RS10840	0.30	+0.2
2,392,771	-		LRK55_RS10840	0.30	-1.2
2,392,771	-		LRK55_RS10840	0.30	+0.9
2,392,857	+		LRK55_RS10840	0.37	-0.4
2,392,857	+		LRK55_RS10840	0.37	-0.1
2,392,857	+		LRK55_RS10840	0.37	-1.1
2,392,857	+		LRK55_RS10840	0.37	-0.4
2,392,857	+		LRK55_RS10840	0.37	+1.2
2,392,857	+		LRK55_RS10840	0.37	-1.4
2,392,857	+		LRK55_RS10840	0.37	+2.0
2,392,858	-		LRK55_RS10840	0.37	-0.0
2,392,858	-		LRK55_RS10840	0.37	+2.4
2,392,869	+		LRK55_RS10840	0.38	+0.3
2,392,869	+		LRK55_RS10840	0.38	-0.2
2,392,869	+		LRK55_RS10840	0.38	-0.0
2,392,869	+		LRK55_RS10840	0.38	+3.0
2,392,869	+		LRK55_RS10840	0.38	-1.7
2,392,869	+		LRK55_RS10840	0.38	+1.3
2,392,869	+		LRK55_RS10840	0.38	-2.2
2,392,869	+		LRK55_RS10840	0.38	-2.0
2,392,869	+		LRK55_RS10840	0.38	+1.0
2,392,869	+		LRK55_RS10840	0.38	+0.6
2,392,869	+		LRK55_RS10840	0.38	-2.3
2,392,869	+		LRK55_RS10840	0.38	+0.8
2,392,869	+		LRK55_RS10840	0.38	-0.1
2,392,870	-		LRK55_RS10840	0.38	+0.9
2,392,870	-		LRK55_RS10840	0.38	+1.0
2,392,870	-		LRK55_RS10840	0.38	-0.5
2,392,870	-		LRK55_RS10840	0.38	+0.9
2,392,870	-		LRK55_RS10840	0.38	+1.0
2,392,870	-		LRK55_RS10840	0.38	+0.5
2,392,870	-		LRK55_RS10840	0.38	-1.5
2,392,929	+		LRK55_RS10840	0.42	-1.6
2,392,929	+		LRK55_RS10840	0.42	-3.2
2,393,031	+		LRK55_RS10840	0.50	+1.1
2,393,031	+		LRK55_RS10840	0.50	-1.5
2,393,032	-		LRK55_RS10840	0.50	+0.7
2,393,032	-		LRK55_RS10840	0.50	-0.2
2,393,032	-		LRK55_RS10840	0.50	+0.5
2,393,032	-		LRK55_RS10840	0.50	+0.0
2,393,032	-		LRK55_RS10840	0.50	-1.0
2,393,032	-		LRK55_RS10840	0.50	+0.6
2,393,032	-		LRK55_RS10840	0.50	+0.3
2,393,032	-		LRK55_RS10840	0.50	-1.2
2,393,044	+		LRK55_RS10840	0.51	+0.9
2,393,044	+		LRK55_RS10840	0.51	+0.8
2,393,044	+		LRK55_RS10840	0.51	+1.4
2,393,044	+		LRK55_RS10840	0.51	+1.4
2,393,044	+		LRK55_RS10840	0.51	-0.2
2,393,044	+		LRK55_RS10840	0.51	+1.4
2,393,044	+		LRK55_RS10840	0.51	+1.0
2,393,044	+		LRK55_RS10840	0.51	+1.0
2,393,045	-		LRK55_RS10840	0.51	-0.6
2,393,045	-		LRK55_RS10840	0.51	-1.4
2,393,045	-		LRK55_RS10840	0.51	-1.9
2,393,045	-		LRK55_RS10840	0.51	-1.0
2,393,062	-		LRK55_RS10840	0.52	+1.4
2,393,062	-		LRK55_RS10840	0.52	+0.3
2,393,062	-		LRK55_RS10840	0.52	-1.0
2,393,244	+		LRK55_RS10840	0.66	+0.6
2,393,244	+		LRK55_RS10840	0.66	+1.2
2,393,244	+		LRK55_RS10840	0.66	+1.0
2,393,244	+		LRK55_RS10840	0.66	+0.5
2,393,244	+		LRK55_RS10840	0.66	+0.8
2,393,244	+		LRK55_RS10840	0.66	+0.4
2,393,244	+		LRK55_RS10840	0.66	+0.2
2,393,244	+		LRK55_RS10840	0.66	+0.3
2,393,244	+		LRK55_RS10840	0.66	+0.9
2,393,244	+		LRK55_RS10840	0.66	-0.6
2,393,244	+		LRK55_RS10840	0.66	+1.3
2,393,244	+		LRK55_RS10840	0.66	-1.0
2,393,244	+		LRK55_RS10840	0.66	+0.5
2,393,244	+		LRK55_RS10840	0.66	-1.2
2,393,244	+		LRK55_RS10840	0.66	+0.3
2,393,244	+		LRK55_RS10840	0.66	+0.1
2,393,245	-		LRK55_RS10840	0.66	+0.2
2,393,245	-		LRK55_RS10840	0.66	+2.4
2,393,245	-		LRK55_RS10840	0.66	+0.6
2,393,245	-		LRK55_RS10840	0.66	+1.9
2,393,245	-		LRK55_RS10840	0.66	+0.5
2,393,245	-		LRK55_RS10840	0.66	-0.6
2,393,245	-		LRK55_RS10840	0.66	-1.2
2,393,245	-		LRK55_RS10840	0.66	+0.4
2,393,245	-		LRK55_RS10840	0.66	+1.4
2,393,245	-		LRK55_RS10840	0.66	-1.6
2,393,245	-		LRK55_RS10840	0.66	+0.4
2,393,245	-		LRK55_RS10840	0.66	-0.5
2,393,245	-		LRK55_RS10840	0.66	+0.7
2,393,245	-		LRK55_RS10840	0.66	+1.9
2,393,245	-		LRK55_RS10840	0.66	+1.4
2,393,245	-		LRK55_RS10840	0.66	+0.5
2,393,245	-		LRK55_RS10840	0.66	+1.2
2,393,271	+		LRK55_RS10840	0.68	-0.7
2,393,390	+		LRK55_RS10840	0.77	-0.1
2,393,390	+		LRK55_RS10840	0.77	+0.1
2,393,390	+		LRK55_RS10840	0.77	-1.0
2,393,390	+		LRK55_RS10840	0.77	+0.4
2,393,391	-		LRK55_RS10840	0.77	-3.4
2,393,391	-		LRK55_RS10840	0.77	+0.0
2,393,391	-		LRK55_RS10840	0.77	+0.8
2,393,772	+				-0.7
2,393,773	-				-2.6
2,393,885	+		LRK55_RS10845	0.13	+0.4
2,393,886	-		LRK55_RS10845	0.13	-1.2
2,393,946	+		LRK55_RS10845	0.19	+0.5
2,393,947	-		LRK55_RS10845	0.19	-1.0
2,394,411	+		LRK55_RS10845	0.70	-2.0
2,394,411	+		LRK55_RS10845	0.70	-2.9
2,394,411	+		LRK55_RS10845	0.70	+0.2
2,394,411	+		LRK55_RS10845	0.70	-0.4
2,394,411	+		LRK55_RS10845	0.70	+0.0
2,394,411	+		LRK55_RS10845	0.70	+0.0
2,394,411	+		LRK55_RS10845	0.70	+1.5
2,394,411	+		LRK55_RS10845	0.70	+0.5
2,394,411	+		LRK55_RS10845	0.70	-1.7
2,394,411	+		LRK55_RS10845	0.70	-0.3
2,394,412	-		LRK55_RS10845	0.70	-1.0
2,394,412	-		LRK55_RS10845	0.70	-2.1
2,394,412	-		LRK55_RS10845	0.70	-1.5
2,394,412	-		LRK55_RS10845	0.70	+0.8
2,394,412	-		LRK55_RS10845	0.70	+1.2
2,394,412	-		LRK55_RS10845	0.70	-1.4
2,394,412	-		LRK55_RS10845	0.70	-1.1
2,394,412	-		LRK55_RS10845	0.70	-0.2
2,394,412	-		LRK55_RS10845	0.70	+1.9
2,394,412	-		LRK55_RS10845	0.70	-0.0
2,394,412	-		LRK55_RS10845	0.70	-3.5
2,394,412	-		LRK55_RS10845	0.70	-1.0
2,394,459	+		LRK55_RS10845	0.75	+0.5
2,394,459	+		LRK55_RS10845	0.75	+1.4
2,394,459	+		LRK55_RS10845	0.75	-1.6
2,394,459	+		LRK55_RS10845	0.75	+0.6
2,394,459	+		LRK55_RS10845	0.75	-0.0
2,394,459	+		LRK55_RS10845	0.75	+1.8
2,394,459	+		LRK55_RS10845	0.75	-1.7
2,394,459	+		LRK55_RS10845	0.75	-0.6
2,394,459	+		LRK55_RS10845	0.75	-0.1
2,394,460	-		LRK55_RS10845	0.75	+0.1
2,394,460	-		LRK55_RS10845	0.75	+0.9
2,394,460	-		LRK55_RS10845	0.75	+0.3
2,394,460	-		LRK55_RS10845	0.75	+0.8
2,394,460	-		LRK55_RS10845	0.75	-0.6
2,394,460	-		LRK55_RS10845	0.75	-1.5
2,394,460	-		LRK55_RS10845	0.75	-1.0
2,394,460	-		LRK55_RS10845	0.75	-2.9
2,394,460	-		LRK55_RS10845	0.75	+0.8
2,394,460	-		LRK55_RS10845	0.75	+0.1
2,394,460	-		LRK55_RS10845	0.75	+2.4
2,394,460	-		LRK55_RS10845	0.75	-0.2
2,394,490	-		LRK55_RS10845	0.78	+1.6
2,394,543	+		LRK55_RS10845	0.84	-3.9
2,394,543	+		LRK55_RS10845	0.84	-4.2
2,394,543	+		LRK55_RS10845	0.84	-0.6
2,394,543	+		LRK55_RS10845	0.84	-0.3
2,394,543	+		LRK55_RS10845	0.84	+0.4
2,394,544	-		LRK55_RS10845	0.84	-2.2
2,394,661	+				-0.2
2,394,661	+				-2.1
2,394,662	-				-2.9
2,394,662	-				-2.2
2,394,662	-				-0.1