Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS08880 and LRK55_RS08885 are separated by 178 nucleotides LRK55_RS08885 and LRK55_RS08890 are separated by 51 nucleotides LRK55_RS08890 and LRK55_RS08895 overlap by 11 nucleotides
LRK55_RS08880: LRK55_RS08880 - IS3 family transposase, at 1,948,703 to 1,949,781
_RS08880
LRK55_RS08885: LRK55_RS08885 - class I SAM-dependent methyltransferase, at 1,949,960 to 1,950,634
_RS08885
LRK55_RS08890: LRK55_RS08890 - Rrf2 family transcriptional regulator, at 1,950,686 to 1,951,138
_RS08890
LRK55_RS08895: LRK55_RS08895 - NAD(P)/FAD-dependent oxidoreductase, at 1,951,128 to 1,952,015
_RS08895
Position (kb) 1950
1951
1952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1949.710 kb on + strand at 1949.711 kb on - strand at 1949.711 kb on - strand at 1949.711 kb on - strand at 1949.762 kb on - strand at 1949.774 kb on + strand at 1949.774 kb on + strand at 1949.774 kb on + strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.775 kb on - strand at 1949.780 kb on - strand at 1949.780 kb on - strand at 1949.780 kb on - strand at 1949.780 kb on - strand at 1949.792 kb on + strand at 1949.860 kb on + strand at 1949.860 kb on + strand at 1949.860 kb on + strand at 1949.860 kb on + strand at 1949.860 kb on + strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.861 kb on - strand at 1949.879 kb on - strand at 1949.933 kb on - strand at 1949.933 kb on - strand at 1949.933 kb on - strand at 1949.962 kb on - strand at 1949.973 kb on + strand at 1949.973 kb on + strand at 1949.974 kb on - strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.006 kb on + strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.007 kb on - strand at 1950.140 kb on + strand, within LRK55_RS08885 at 1950.140 kb on + strand, within LRK55_RS08885 at 1950.140 kb on + strand, within LRK55_RS08885 at 1950.140 kb on + strand, within LRK55_RS08885 at 1950.140 kb on + strand, within LRK55_RS08885 at 1950.141 kb on - strand, within LRK55_RS08885 at 1950.141 kb on - strand, within LRK55_RS08885 at 1950.141 kb on - strand, within LRK55_RS08885 at 1950.212 kb on + strand, within LRK55_RS08885 at 1950.212 kb on + strand, within LRK55_RS08885 at 1950.213 kb on - strand, within LRK55_RS08885 at 1950.213 kb on - strand, within LRK55_RS08885 at 1950.213 kb on - strand, within LRK55_RS08885 at 1950.345 kb on + strand, within LRK55_RS08885 at 1950.345 kb on + strand, within LRK55_RS08885 at 1950.345 kb on + strand, within LRK55_RS08885 at 1950.345 kb on + strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.346 kb on - strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.431 kb on + strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.432 kb on - strand, within LRK55_RS08885 at 1950.450 kb on + strand, within LRK55_RS08885 at 1950.450 kb on + strand, within LRK55_RS08885 at 1950.450 kb on + strand, within LRK55_RS08885 at 1950.450 kb on + strand, within LRK55_RS08885 at 1950.451 kb on - strand, within LRK55_RS08885 at 1950.451 kb on - strand, within LRK55_RS08885 at 1950.478 kb on + strand, within LRK55_RS08885 at 1950.478 kb on + strand, within LRK55_RS08885 at 1950.539 kb on + strand, within LRK55_RS08885 at 1950.539 kb on + strand, within LRK55_RS08885 at 1950.539 kb on + strand, within LRK55_RS08885 at 1950.539 kb on + strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.540 kb on - strand, within LRK55_RS08885 at 1950.600 kb on + strand at 1950.601 kb on - strand at 1950.714 kb on + strand at 1950.714 kb on + strand at 1950.714 kb on + strand at 1950.714 kb on + strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1950.715 kb on - strand at 1951.041 kb on + strand, within LRK55_RS08890 at 1951.161 kb on + strand at 1951.162 kb on - strand at 1951.162 kb on - strand at 1951.332 kb on + strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.333 kb on - strand, within LRK55_RS08895 at 1951.419 kb on + strand, within LRK55_RS08895 at 1951.419 kb on + strand, within LRK55_RS08895 at 1951.419 kb on + strand, within LRK55_RS08895 at 1951.419 kb on + strand, within LRK55_RS08895 at 1951.420 kb on - strand, within LRK55_RS08895 at 1951.420 kb on - strand, within LRK55_RS08895 at 1951.475 kb on - strand, within LRK55_RS08895 at 1951.521 kb on + strand, within LRK55_RS08895 at 1951.522 kb on - strand, within LRK55_RS08895 at 1951.522 kb on - strand, within LRK55_RS08895 at 1951.522 kb on - strand, within LRK55_RS08895 at 1951.533 kb on + strand, within LRK55_RS08895 at 1951.533 kb on + strand, within LRK55_RS08895 at 1951.534 kb on - strand, within LRK55_RS08895 at 1951.540 kb on + strand, within LRK55_RS08895 at 1951.555 kb on + strand, within LRK55_RS08895 at 1951.555 kb on + strand, within LRK55_RS08895 at 1951.556 kb on - strand, within LRK55_RS08895 at 1951.556 kb on - strand, within LRK55_RS08895 at 1951.777 kb on + strand, within LRK55_RS08895 at 1951.778 kb on - strand, within LRK55_RS08895 at 1951.781 kb on + strand, within LRK55_RS08895 at 1951.805 kb on + strand, within LRK55_RS08895 at 1951.805 kb on + strand, within LRK55_RS08895 at 1951.806 kb on - strand, within LRK55_RS08895 at 1951.806 kb on - strand, within LRK55_RS08895 at 1951.806 kb on - strand, within LRK55_RS08895 at 1951.806 kb on - strand, within LRK55_RS08895 at 1951.806 kb on - strand, within LRK55_RS08895 at 1951.865 kb on - strand, within LRK55_RS08895 at 1951.865 kb on - strand, within LRK55_RS08895 at 1951.903 kb on + strand, within LRK55_RS08895 at 1951.903 kb on + strand, within LRK55_RS08895 at 1951.904 kb on - strand, within LRK55_RS08895 at 1951.904 kb on - strand, within LRK55_RS08895 at 1951.904 kb on - strand, within LRK55_RS08895 at 1951.904 kb on - strand, within LRK55_RS08895 at 1952.013 kb on + strand at 1952.119 kb on + strand at 1952.119 kb on + strand at 1952.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,949,710 + +0.0 1,949,711 - +0.3 1,949,711 - -0.3 1,949,711 - -0.1 1,949,762 - +0.9 1,949,774 + +1.0 1,949,774 + -0.2 1,949,774 + +0.3 1,949,775 - -0.7 1,949,775 - -0.0 1,949,775 - +0.2 1,949,775 - +0.6 1,949,775 - -0.1 1,949,775 - -1.2 1,949,775 - +0.3 1,949,780 - +0.8 1,949,780 - -2.5 1,949,780 - -1.1 1,949,780 - +0.3 1,949,792 + +2.9 1,949,860 + -0.3 1,949,860 + +1.3 1,949,860 + -0.9 1,949,860 + -1.4 1,949,860 + -0.7 1,949,861 - +0.3 1,949,861 - +0.4 1,949,861 - -2.1 1,949,861 - +0.5 1,949,861 - +0.4 1,949,861 - +0.9 1,949,861 - -1.4 1,949,879 - -1.2 1,949,933 - +0.2 1,949,933 - +0.1 1,949,933 - -2.9 1,949,962 - -0.4 1,949,973 + +0.6 1,949,973 + +1.0 1,949,974 - -0.5 1,950,006 + +0.7 1,950,006 + -1.4 1,950,006 + +0.2 1,950,006 + -0.8 1,950,006 + +0.8 1,950,006 + -0.4 1,950,006 + -0.5 1,950,007 - +1.4 1,950,007 - +0.1 1,950,007 - +0.4 1,950,007 - -0.7 1,950,007 - -0.3 1,950,007 - -0.6 1,950,007 - +0.6 1,950,007 - -1.6 1,950,007 - -0.7 1,950,007 - -2.3 1,950,007 - -0.6 1,950,007 - +0.8 1,950,007 - +0.4 1,950,007 - -0.9 1,950,140 + LRK55_RS08885 0.27 -1.1 1,950,140 + LRK55_RS08885 0.27 -1.1 1,950,140 + LRK55_RS08885 0.27 -0.7 1,950,140 + LRK55_RS08885 0.27 +1.6 1,950,140 + LRK55_RS08885 0.27 -1.9 1,950,141 - LRK55_RS08885 0.27 +0.4 1,950,141 - LRK55_RS08885 0.27 +1.3 1,950,141 - LRK55_RS08885 0.27 -0.3 1,950,212 + LRK55_RS08885 0.37 +0.9 1,950,212 + LRK55_RS08885 0.37 +0.9 1,950,213 - LRK55_RS08885 0.37 +0.1 1,950,213 - LRK55_RS08885 0.37 +0.6 1,950,213 - LRK55_RS08885 0.37 -0.6 1,950,345 + LRK55_RS08885 0.57 +0.2 1,950,345 + LRK55_RS08885 0.57 +1.2 1,950,345 + LRK55_RS08885 0.57 +0.0 1,950,345 + LRK55_RS08885 0.57 +0.3 1,950,346 - LRK55_RS08885 0.57 +1.1 1,950,346 - LRK55_RS08885 0.57 +0.5 1,950,346 - LRK55_RS08885 0.57 -1.3 1,950,346 - LRK55_RS08885 0.57 -0.4 1,950,346 - LRK55_RS08885 0.57 +0.9 1,950,346 - LRK55_RS08885 0.57 -0.6 1,950,346 - LRK55_RS08885 0.57 -2.5 1,950,346 - LRK55_RS08885 0.57 -1.1 1,950,431 + LRK55_RS08885 0.70 -1.2 1,950,431 + LRK55_RS08885 0.70 +0.9 1,950,431 + LRK55_RS08885 0.70 +0.6 1,950,431 + LRK55_RS08885 0.70 -1.0 1,950,431 + LRK55_RS08885 0.70 +0.1 1,950,431 + LRK55_RS08885 0.70 +1.6 1,950,431 + LRK55_RS08885 0.70 -0.4 1,950,431 + LRK55_RS08885 0.70 -0.2 1,950,432 - LRK55_RS08885 0.70 -0.0 1,950,432 - LRK55_RS08885 0.70 -0.5 1,950,432 - LRK55_RS08885 0.70 -0.9 1,950,432 - LRK55_RS08885 0.70 -2.1 1,950,432 - LRK55_RS08885 0.70 -0.2 1,950,432 - LRK55_RS08885 0.70 +2.1 1,950,432 - LRK55_RS08885 0.70 +0.9 1,950,450 + LRK55_RS08885 0.73 -1.0 1,950,450 + LRK55_RS08885 0.73 -1.4 1,950,450 + LRK55_RS08885 0.73 -1.1 1,950,450 + LRK55_RS08885 0.73 +0.2 1,950,451 - LRK55_RS08885 0.73 +0.0 1,950,451 - LRK55_RS08885 0.73 -0.4 1,950,478 + LRK55_RS08885 0.77 +0.4 1,950,478 + LRK55_RS08885 0.77 -1.8 1,950,539 + LRK55_RS08885 0.86 -0.9 1,950,539 + LRK55_RS08885 0.86 +1.7 1,950,539 + LRK55_RS08885 0.86 +0.9 1,950,539 + LRK55_RS08885 0.86 +0.6 1,950,540 - LRK55_RS08885 0.86 +0.4 1,950,540 - LRK55_RS08885 0.86 +0.0 1,950,540 - LRK55_RS08885 0.86 +0.2 1,950,540 - LRK55_RS08885 0.86 +1.0 1,950,540 - LRK55_RS08885 0.86 -2.4 1,950,540 - LRK55_RS08885 0.86 -0.6 1,950,540 - LRK55_RS08885 0.86 -0.2 1,950,600 + +1.1 1,950,601 - +0.9 1,950,714 + +0.1 1,950,714 + +0.4 1,950,714 + +0.9 1,950,714 + +2.2 1,950,715 - -1.7 1,950,715 - -1.5 1,950,715 - +0.5 1,950,715 - -0.9 1,950,715 - +1.0 1,950,715 - +1.0 1,950,715 - +1.3 1,951,041 + LRK55_RS08890 0.78 +0.7 1,951,161 + +2.6 1,951,162 - -0.4 1,951,162 - -0.3 1,951,332 + LRK55_RS08895 0.23 -2.6 1,951,333 - LRK55_RS08895 0.23 -0.3 1,951,333 - LRK55_RS08895 0.23 +1.2 1,951,333 - LRK55_RS08895 0.23 -0.2 1,951,333 - LRK55_RS08895 0.23 -0.8 1,951,333 - LRK55_RS08895 0.23 +0.7 1,951,333 - LRK55_RS08895 0.23 -0.5 1,951,333 - LRK55_RS08895 0.23 -0.7 1,951,333 - LRK55_RS08895 0.23 +1.3 1,951,333 - LRK55_RS08895 0.23 -2.3 1,951,333 - LRK55_RS08895 0.23 +0.2 1,951,333 - LRK55_RS08895 0.23 +0.3 1,951,333 - LRK55_RS08895 0.23 -2.0 1,951,419 + LRK55_RS08895 0.33 -0.3 1,951,419 + LRK55_RS08895 0.33 -1.1 1,951,419 + LRK55_RS08895 0.33 -0.2 1,951,419 + LRK55_RS08895 0.33 +0.6 1,951,420 - LRK55_RS08895 0.33 +1.2 1,951,420 - LRK55_RS08895 0.33 +0.0 1,951,475 - LRK55_RS08895 0.39 +1.3 1,951,521 + LRK55_RS08895 0.44 +0.3 1,951,522 - LRK55_RS08895 0.44 -1.1 1,951,522 - LRK55_RS08895 0.44 +1.3 1,951,522 - LRK55_RS08895 0.44 -2.6 1,951,533 + LRK55_RS08895 0.46 -0.1 1,951,533 + LRK55_RS08895 0.46 +0.3 1,951,534 - LRK55_RS08895 0.46 +0.9 1,951,540 + LRK55_RS08895 0.46 +0.2 1,951,555 + LRK55_RS08895 0.48 +0.2 1,951,555 + LRK55_RS08895 0.48 +0.0 1,951,556 - LRK55_RS08895 0.48 +0.9 1,951,556 - LRK55_RS08895 0.48 +0.6 1,951,777 + LRK55_RS08895 0.73 -0.9 1,951,778 - LRK55_RS08895 0.73 +0.4 1,951,781 + LRK55_RS08895 0.74 +0.8 1,951,805 + LRK55_RS08895 0.76 +1.2 1,951,805 + LRK55_RS08895 0.76 -0.8 1,951,806 - LRK55_RS08895 0.76 -2.5 1,951,806 - LRK55_RS08895 0.76 -3.2 1,951,806 - LRK55_RS08895 0.76 +0.9 1,951,806 - LRK55_RS08895 0.76 -0.3 1,951,806 - LRK55_RS08895 0.76 +1.4 1,951,865 - LRK55_RS08895 0.83 -0.5 1,951,865 - LRK55_RS08895 0.83 -1.3 1,951,903 + LRK55_RS08895 0.87 -0.2 1,951,903 + LRK55_RS08895 0.87 -2.9 1,951,904 - LRK55_RS08895 0.87 +0.0 1,951,904 - LRK55_RS08895 0.87 +1.0 1,951,904 - LRK55_RS08895 0.87 +0.4 1,951,904 - LRK55_RS08895 0.87 +1.4 1,952,013 + +0.4 1,952,119 + -0.4 1,952,119 + +0.1 1,952,119 + +1.0
Or see this region's nucleotide sequence