Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07485

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,634,955	-				-0.3
1,634,963	+				-2.7
1,634,964	-				-1.5
1,634,964	-				+0.1
1,634,964	-				-2.6
1,634,964	-				+0.0
1,634,964	-				-0.2
1,634,964	-				-2.6
1,634,964	-				+0.4
1,634,964	-				+0.6
1,634,964	-				-3.0
1,635,005	+				+0.1
1,635,005	+				-1.2
1,635,006	-				+1.6
1,635,398	+				+0.6
1,635,398	+				-2.6
1,635,398	+				-1.1
1,635,398	+				-0.0
1,635,398	+				+1.5
1,635,398	+				+0.5
1,635,398	+				+0.6
1,635,398	+				-0.2
1,635,398	+				+1.0
1,635,398	+				+0.7
1,635,399	-				+1.4
1,635,399	-				+1.4
1,635,399	-				-0.6
1,635,399	-				+1.4
1,635,399	-				-1.0
1,635,399	-				+1.7
1,635,399	-				+1.4
1,635,399	-				+0.5
1,635,399	-				+1.5
1,635,399	-				-1.6
1,635,399	-				+0.7
1,635,399	-				+0.2
1,635,401	+				+1.8
1,635,401	+				+0.2
1,635,401	+				+0.7
1,635,401	+				-2.6
1,635,401	+				+1.1
1,635,401	+				-0.9
1,635,401	+				+0.3
1,635,402	-				+0.9
1,635,402	-				+0.0
1,635,402	-				-0.6
1,635,402	-				-3.5
1,635,402	-				+0.5
1,635,402	-				+0.8
1,635,402	-				-1.5
1,635,402	-				+0.1
1,635,402	-				-1.2
1,635,402	-				+0.9
1,635,402	-				-2.3
1,635,402	-				+0.9
1,635,402	-				+0.2
1,635,402	-				+0.5
1,635,402	-				-0.1
1,635,402	-				-1.2
1,635,549	+		LRK55_RS07480	0.45	+1.1
1,635,549	+		LRK55_RS07480	0.45	-0.6
1,635,549	+		LRK55_RS07480	0.45	+0.6
1,635,550	-		LRK55_RS07480	0.45	-0.2
1,635,550	-		LRK55_RS07480	0.45	+0.5
1,635,638	+		LRK55_RS07480	0.66	+0.1
1,635,639	-		LRK55_RS07480	0.66	-0.1
1,635,639	-		LRK55_RS07480	0.66	-1.0
1,636,123	+		LRK55_RS07485	0.31	+2.2
1,636,123	+		LRK55_RS07485	0.31	+1.8
1,636,123	+		LRK55_RS07485	0.31	-0.4
1,636,123	+		LRK55_RS07485	0.31	-0.4
1,636,123	+		LRK55_RS07485	0.31	-0.8
1,636,123	+		LRK55_RS07485	0.31	+0.6
1,636,123	+		LRK55_RS07485	0.31	+1.5
1,636,123	+		LRK55_RS07485	0.31	-3.4
1,636,123	+		LRK55_RS07485	0.31	-1.4
1,636,123	+		LRK55_RS07485	0.31	+0.5
1,636,123	+		LRK55_RS07485	0.31	+0.2
1,636,123	+		LRK55_RS07485	0.31	+0.7
1,636,123	+		LRK55_RS07485	0.31	+0.4
1,636,123	+		LRK55_RS07485	0.31	+1.1
1,636,123	+		LRK55_RS07485	0.31	-1.4
1,636,124	-		LRK55_RS07485	0.31	-0.2
1,636,124	-		LRK55_RS07485	0.31	+0.8
1,636,166	-		LRK55_RS07485	0.35	+2.7
1,636,177	+		LRK55_RS07485	0.36	+0.8
1,636,177	+		LRK55_RS07485	0.36	+0.4
1,636,177	+		LRK55_RS07485	0.36	+0.8
1,636,178	-		LRK55_RS07485	0.36	+3.9
1,636,178	-		LRK55_RS07485	0.36	+0.1
1,636,178	-		LRK55_RS07485	0.36	-0.3
1,636,178	-		LRK55_RS07485	0.36	-2.1
1,636,181	+		LRK55_RS07485	0.37	-0.5
1,636,181	+		LRK55_RS07485	0.37	-0.0
1,636,181	+		LRK55_RS07485	0.37	-0.9
1,636,181	+		LRK55_RS07485	0.37	+1.0
1,636,181	+		LRK55_RS07485	0.37	+1.1
1,636,182	-		LRK55_RS07485	0.37	+0.2
1,636,182	-		LRK55_RS07485	0.37	-0.7
1,636,182	-		LRK55_RS07485	0.37	-0.1
1,636,285	+		LRK55_RS07485	0.46	-1.0
1,636,285	+		LRK55_RS07485	0.46	-0.2
1,636,286	-		LRK55_RS07485	0.46	-0.4
1,636,286	-		LRK55_RS07485	0.46	-0.2
1,636,286	-		LRK55_RS07485	0.46	-0.9
1,636,549	+		LRK55_RS07485	0.70	-0.6
1,636,592	-		LRK55_RS07485	0.74	+0.3
1,636,592	-		LRK55_RS07485	0.74	-0.6
1,636,693	+		LRK55_RS07485	0.83	-1.5
1,636,693	+		LRK55_RS07485	0.83	-0.4
1,636,694	-		LRK55_RS07485	0.83	+0.2
1,636,694	-		LRK55_RS07485	0.83	+1.5
1,636,900	+				+0.8
1,636,901	-				-0.8
1,636,901	-				+0.8
1,637,054	+				-1.0
1,637,144	+				-0.3
1,637,145	-				-0.5
1,637,145	-				-0.2
1,637,228	+		LRK55_RS07490	0.11	+1.4
1,637,228	+		LRK55_RS07490	0.11	+0.6
1,637,228	+		LRK55_RS07490	0.11	+0.7
1,637,228	+		LRK55_RS07490	0.11	+0.6
1,637,228	+		LRK55_RS07490	0.11	+0.4
1,637,228	+		LRK55_RS07490	0.11	+0.2
1,637,228	+		LRK55_RS07490	0.11	+1.0
1,637,228	+		LRK55_RS07490	0.11	-1.1
1,637,228	+		LRK55_RS07490	0.11	-2.1
1,637,228	+		LRK55_RS07490	0.11	+0.3
1,637,229	-		LRK55_RS07490	0.11	+0.5
1,637,229	-		LRK55_RS07490	0.11	+0.2
1,637,229	-		LRK55_RS07490	0.11	+2.1
1,637,229	-		LRK55_RS07490	0.11	-0.4
1,637,241	-		LRK55_RS07490	0.11	-0.1
1,637,241	-		LRK55_RS07490	0.11	+1.3
1,637,241	-		LRK55_RS07490	0.11	-1.8
1,637,241	-		LRK55_RS07490	0.11	+1.2
1,637,435	+		LRK55_RS07490	0.17	-0.8
1,637,435	+		LRK55_RS07490	0.17	+0.6
1,637,435	+		LRK55_RS07490	0.17	+1.0
1,637,436	-		LRK55_RS07490	0.17	-1.7
1,637,436	-		LRK55_RS07490	0.17	+0.8
1,637,436	-		LRK55_RS07490	0.17	+0.4
1,637,436	-		LRK55_RS07490	0.17	-0.1
1,637,436	-		LRK55_RS07490	0.17	+0.2
1,637,436	-		LRK55_RS07490	0.17	+0.6
1,637,436	-		LRK55_RS07490	0.17	-0.4
1,637,436	-		LRK55_RS07490	0.17	+0.2
1,637,436	-		LRK55_RS07490	0.17	+0.2
1,637,437	+		LRK55_RS07490	0.17	+0.0
1,637,437	+		LRK55_RS07490	0.17	+0.8
1,637,437	+		LRK55_RS07490	0.17	+1.1
1,637,437	+		LRK55_RS07490	0.17	+1.9
1,637,437	+		LRK55_RS07490	0.17	-0.8
1,637,438	-		LRK55_RS07490	0.17	-1.6
1,637,438	-		LRK55_RS07490	0.17	+0.5
1,637,438	-		LRK55_RS07490	0.17	-0.1
1,637,672	+		LRK55_RS07490	0.25	+0.2
1,637,672	+		LRK55_RS07490	0.25	-1.8
1,637,672	+		LRK55_RS07490	0.25	+1.5
1,637,672	+		LRK55_RS07490	0.25	-2.3
1,637,672	+		LRK55_RS07490	0.25	+0.2
1,637,673	-		LRK55_RS07490	0.25	+2.6
1,637,673	-		LRK55_RS07490	0.25	-1.0
1,637,673	-		LRK55_RS07490	0.25	+0.5
1,637,673	-		LRK55_RS07490	0.25	+1.0
1,637,673	-		LRK55_RS07490	0.25	-0.1