Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07440

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,626,369	-		LRK55_RS07435	0.59	-1.8
1,626,488	+		LRK55_RS07435	0.70	-0.6
1,626,489	-		LRK55_RS07435	0.70	+0.5
1,626,489	-		LRK55_RS07435	0.70	+1.4
1,626,612	-		LRK55_RS07435	0.81	-1.3
1,626,620	+		LRK55_RS07435	0.82	+1.6
1,626,620	+		LRK55_RS07435	0.82	+0.4
1,626,621	-		LRK55_RS07435	0.82	-2.5
1,626,621	-		LRK55_RS07435	0.82	+0.6
1,626,621	-		LRK55_RS07435	0.82	+0.6
1,626,973	+				+0.2
1,626,973	+				+0.9
1,626,973	+				+0.3
1,626,974	-				+0.4
1,626,974	-				+0.6
1,626,974	-				-1.7
1,626,974	-				+0.2
1,627,012	+				+0.6
1,627,036	+				-0.2
1,627,036	+				+0.6
1,627,036	+				-0.3
1,627,036	+				+0.2
1,627,036	+				-0.8
1,627,036	+				+0.0
1,627,036	+				+0.8
1,627,036	+				-0.4
1,627,036	+				+0.7
1,627,036	+				-1.4
1,627,036	+				-0.4
1,627,036	+				-0.3
1,627,036	+				+0.3
1,627,036	+				+1.3
1,627,036	+				-0.3
1,627,036	+				-2.0
1,627,036	+				-0.1
1,627,036	+				-3.0
1,627,036	+				-0.0
1,627,036	+				-0.0
1,627,036	+				+0.4
1,627,036	+				+0.6
1,627,036	+				+1.5
1,627,036	+				-0.9
1,627,036	+				+0.2
1,627,036	+				-1.3
1,627,036	+				-0.0
1,627,036	+				-0.0
1,627,036	+				-0.1
1,627,036	+				+0.3
1,627,036	+				+0.6
1,627,036	+				+0.5
1,627,037	-				+0.0
1,627,037	-				+0.1
1,627,037	-				+0.6
1,627,037	-				-1.2
1,627,037	-				-0.3
1,627,037	-				-0.5
1,627,037	-				+0.5
1,627,037	-				+0.8
1,627,037	-				+0.1
1,627,037	-				+0.9
1,627,037	-				-0.1
1,627,037	-				+0.2
1,627,037	-				-1.1
1,627,037	-				-0.4
1,627,037	-				-0.3
1,627,037	-				+0.3
1,627,037	-				-0.9
1,627,037	-				+0.7
1,627,037	-				+4.4
1,627,037	-				-2.0
1,627,037	-				+0.5
1,627,037	-				-1.8
1,627,037	-				+0.5
1,627,037	-				+0.6
1,627,037	-				+1.0
1,627,037	-				-0.6
1,627,037	-				-0.5
1,627,037	-				+0.9
1,627,037	-				+0.0
1,627,037	-				-0.2
1,627,037	-				-0.2
1,627,037	-				+0.4
1,627,044	+				+0.4
1,627,044	+				-0.6
1,627,045	-				-1.8
1,627,180	+				+0.2
1,627,180	+				-1.0
1,627,181	-				+1.0
1,627,401	+		LRK55_RS07440	0.12	-0.3
1,627,402	-		LRK55_RS07440	0.12	+1.5
1,627,402	-		LRK55_RS07440	0.12	+0.4
1,627,402	-		LRK55_RS07440	0.12	-0.5
1,627,428	+		LRK55_RS07440	0.14	-1.1
1,627,428	+		LRK55_RS07440	0.14	+0.8
1,627,428	+		LRK55_RS07440	0.14	+1.0
1,627,428	+		LRK55_RS07440	0.14	-0.9
1,627,428	+		LRK55_RS07440	0.14	-1.2
1,627,428	+		LRK55_RS07440	0.14	-1.8
1,627,428	+		LRK55_RS07440	0.14	+1.1
1,627,428	+		LRK55_RS07440	0.14	-0.6
1,627,428	+		LRK55_RS07440	0.14	+0.3
1,627,428	+		LRK55_RS07440	0.14	-1.8
1,627,428	+		LRK55_RS07440	0.14	-0.5
1,627,429	-		LRK55_RS07440	0.14	-0.6
1,627,429	-		LRK55_RS07440	0.14	-1.9
1,627,429	-		LRK55_RS07440	0.14	-0.9
1,627,429	-		LRK55_RS07440	0.14	+0.8
1,627,429	-		LRK55_RS07440	0.14	+0.0
1,627,429	-		LRK55_RS07440	0.14	+0.7
1,627,429	-		LRK55_RS07440	0.14	-0.2
1,627,437	+		LRK55_RS07440	0.15	-1.1
1,627,438	-		LRK55_RS07440	0.15	-1.3
1,627,438	-		LRK55_RS07440	0.15	+0.4
1,627,438	-		LRK55_RS07440	0.15	-0.4
1,627,638	+		LRK55_RS07440	0.30	+0.1
1,627,638	+		LRK55_RS07440	0.30	-0.8
1,627,638	+		LRK55_RS07440	0.30	-0.3
1,627,639	-		LRK55_RS07440	0.30	+1.2
1,627,849	-		LRK55_RS07440	0.46	+0.7
1,627,934	+		LRK55_RS07440	0.53	-0.2
1,627,934	+		LRK55_RS07440	0.53	-1.0
1,627,935	-		LRK55_RS07440	0.53	-0.2
1,627,935	-		LRK55_RS07440	0.53	-1.2
1,627,935	-		LRK55_RS07440	0.53	+0.5
1,628,019	+		LRK55_RS07440	0.59	+1.0
1,628,019	+		LRK55_RS07440	0.59	-2.0
1,628,020	-		LRK55_RS07440	0.59	-2.6
1,628,061	+		LRK55_RS07440	0.62	+0.7
1,628,061	+		LRK55_RS07440	0.62	+0.4
1,628,061	+		LRK55_RS07440	0.62	-0.3
1,628,061	+		LRK55_RS07440	0.62	-0.9
1,628,140	-		LRK55_RS07440	0.69	-0.1
1,628,235	+		LRK55_RS07440	0.76	+0.2
1,628,250	+		LRK55_RS07440	0.77	-1.3
1,628,251	-		LRK55_RS07440	0.77	-2.0
1,628,251	-		LRK55_RS07440	0.77	-0.4
1,628,251	-		LRK55_RS07440	0.77	-2.3
1,628,251	-		LRK55_RS07440	0.77	+1.4
1,628,472	+				-2.6
1,628,473	-				+0.4
1,628,478	+				-0.1
1,628,478	+				+1.5
1,628,478	+				-0.0
1,628,478	+				+0.3
1,628,478	+				+0.1
1,628,478	+				+0.3
1,628,478	+				-0.2
1,628,478	+				+1.3
1,628,478	+				+0.8
1,628,478	+				-0.4
1,628,478	+				-0.4
1,628,478	+				+0.4
1,628,478	+				+0.2
1,628,478	+				+1.5
1,628,479	-				-1.4
1,628,479	-				-0.6
1,628,479	-				+1.4
1,628,479	-				-0.3
1,628,479	-				+0.5
1,628,479	-				+0.4
1,628,479	-				+0.7
1,628,479	-				+0.6
1,628,487	+				+0.3
1,628,487	+				+0.4
1,628,487	+				-0.1
1,628,488	-				+1.6
1,628,488	-				-0.1
1,628,490	+				+0.6
1,628,490	+				+0.1
1,628,491	-				-2.9
1,628,491	-				+0.9
1,628,547	+				-0.6
1,628,548	-				+0.4
1,628,548	-				+1.0
1,628,552	+				-1.9
1,628,552	+				-2.3
1,628,552	+				+0.5
1,628,553	-				+0.0
1,628,629	-				-0.4
1,628,629	-				-3.3
1,628,828	+		LRK55_RS07445	0.17	+0.2
1,628,846	+		LRK55_RS07445	0.19	+0.9
1,628,867	+		LRK55_RS07445	0.21	+0.4
1,628,867	+		LRK55_RS07445	0.21	+0.5
1,628,867	+		LRK55_RS07445	0.21	+1.0
1,628,867	+		LRK55_RS07445	0.21	-0.3
1,628,868	-		LRK55_RS07445	0.21	+1.6
1,628,868	-		LRK55_RS07445	0.21	+1.4
1,628,868	-		LRK55_RS07445	0.21	+1.0
1,628,868	-		LRK55_RS07445	0.21	+0.5
1,628,868	-		LRK55_RS07445	0.21	-0.0
1,628,868	-		LRK55_RS07445	0.21	+0.0
1,628,868	-		LRK55_RS07445	0.21	+0.5
1,629,131	+		LRK55_RS07445	0.45	+0.4
1,629,132	-		LRK55_RS07445	0.45	-0.5
1,629,155	+		LRK55_RS07445	0.47	+0.0
1,629,156	-		LRK55_RS07445	0.48	-1.6
1,629,156	-		LRK55_RS07445	0.48	-0.1
1,629,254	+		LRK55_RS07445	0.57	-0.2
1,629,254	+		LRK55_RS07445	0.57	+0.0
1,629,276	-		LRK55_RS07445	0.59	-1.4
1,629,317	+		LRK55_RS07445	0.63	-1.5
1,629,317	+		LRK55_RS07445	0.63	-0.3
1,629,317	+		LRK55_RS07445	0.63	+2.1
1,629,317	+		LRK55_RS07445	0.63	-2.7
1,629,317	+		LRK55_RS07445	0.63	-2.6
1,629,317	+		LRK55_RS07445	0.63	-0.2
1,629,318	-		LRK55_RS07445	0.63	+0.5
1,629,318	-		LRK55_RS07445	0.63	-1.6
1,629,318	-		LRK55_RS07445	0.63	+2.1
1,629,318	-		LRK55_RS07445	0.63	-1.2
1,629,455	+		LRK55_RS07445	0.75	+0.5
1,629,456	-		LRK55_RS07445	0.76	+1.1
1,629,456	-		LRK55_RS07445	0.76	-0.2