Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06500

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,404,662	+		LRK55_RS06495	0.69	+0.7
1,404,662	+		LRK55_RS06495	0.69	+0.8
1,404,662	+		LRK55_RS06495	0.69	-0.3
1,404,662	+		LRK55_RS06495	0.69	+0.1
1,404,662	+		LRK55_RS06495	0.69	-3.1
1,404,662	+		LRK55_RS06495	0.69	-2.1
1,404,662	+		LRK55_RS06495	0.69	+0.9
1,404,663	-		LRK55_RS06495	0.69	-0.6
1,404,663	-		LRK55_RS06495	0.69	+0.1
1,404,663	-		LRK55_RS06495	0.69	+1.1
1,404,663	-		LRK55_RS06495	0.69	+0.9
1,404,663	-		LRK55_RS06495	0.69	-0.1
1,404,663	-		LRK55_RS06495	0.69	+0.3
1,404,752	+		LRK55_RS06495	0.73	+2.9
1,404,752	+		LRK55_RS06495	0.73	-0.1
1,404,753	-		LRK55_RS06495	0.73	-0.5
1,404,753	-		LRK55_RS06495	0.73	+0.6
1,404,782	+		LRK55_RS06495	0.74	-0.3
1,404,782	+		LRK55_RS06495	0.74	+1.1
1,404,782	+		LRK55_RS06495	0.74	-2.7
1,404,782	+		LRK55_RS06495	0.74	+0.6
1,404,782	+		LRK55_RS06495	0.74	+1.3
1,404,783	-		LRK55_RS06495	0.74	+1.8
1,404,783	-		LRK55_RS06495	0.74	-0.6
1,404,783	-		LRK55_RS06495	0.74	+1.4
1,404,783	-		LRK55_RS06495	0.74	+0.4
1,404,783	-		LRK55_RS06495	0.74	+0.0
1,404,785	+		LRK55_RS06495	0.74	+1.3
1,404,785	+		LRK55_RS06495	0.74	+0.7
1,404,785	+		LRK55_RS06495	0.74	+0.6
1,404,785	+		LRK55_RS06495	0.74	-0.1
1,404,785	+		LRK55_RS06495	0.74	+1.4
1,404,785	+		LRK55_RS06495	0.74	-1.2
1,404,785	+		LRK55_RS06495	0.74	-1.6
1,404,785	+		LRK55_RS06495	0.74	-1.3
1,404,785	+		LRK55_RS06495	0.74	+0.2
1,404,785	+		LRK55_RS06495	0.74	-0.1
1,404,785	+		LRK55_RS06495	0.74	+0.6
1,404,785	+		LRK55_RS06495	0.74	+2.5
1,404,785	+		LRK55_RS06495	0.74	-1.3
1,404,785	+		LRK55_RS06495	0.74	+0.4
1,404,786	-		LRK55_RS06495	0.74	-3.0
1,404,786	-		LRK55_RS06495	0.74	+0.7
1,404,786	-		LRK55_RS06495	0.74	+0.5
1,404,926	+		LRK55_RS06495	0.79	+0.3
1,404,926	+		LRK55_RS06495	0.79	+1.3
1,404,926	+		LRK55_RS06495	0.79	+1.9
1,404,927	-		LRK55_RS06495	0.79	+0.5
1,404,927	-		LRK55_RS06495	0.79	-2.3
1,404,927	-		LRK55_RS06495	0.79	+0.2
1,405,148	+		LRK55_RS06495	0.86	+1.2
1,405,148	+		LRK55_RS06495	0.86	+0.1
1,405,148	+		LRK55_RS06495	0.86	+0.4
1,405,148	+		LRK55_RS06495	0.86	+1.8
1,405,148	+		LRK55_RS06495	0.86	+1.3
1,405,148	+		LRK55_RS06495	0.86	-0.6
1,405,149	-		LRK55_RS06495	0.86	+0.5
1,405,149	-		LRK55_RS06495	0.86	-1.5
1,405,149	-		LRK55_RS06495	0.86	+0.1
1,405,594	+				+0.7
1,405,594	+				+0.5
1,405,594	+				-0.1
1,405,595	-				-1.7
1,405,595	-				+0.7
1,405,595	-				-0.2
1,405,619	+				-0.6
1,405,619	+				+0.9
1,405,619	+				-0.9
1,405,619	+				+0.4
1,405,619	+				+1.5
1,405,619	+				+1.1
1,405,619	+				+0.9
1,405,619	+				-2.6
1,405,619	+				-0.2
1,405,619	+				+0.8
1,405,619	+				+0.6
1,405,620	-				+0.5
1,405,620	-				-1.3
1,405,620	-				-2.4
1,405,620	-				+0.2
1,405,620	-				-1.7
1,405,620	-				-2.3
1,405,620	-				+1.3
1,405,620	-				+0.5
1,405,819	-				-1.5
1,405,929	+		LRK55_RS06500	0.14	-3.5
1,405,929	+		LRK55_RS06500	0.14	-1.8
1,405,930	-		LRK55_RS06500	0.14	-1.8
1,405,930	-		LRK55_RS06500	0.14	-2.8
1,405,960	+		LRK55_RS06500	0.16	-1.5
1,405,960	+		LRK55_RS06500	0.16	-0.7
1,405,960	+		LRK55_RS06500	0.16	-3.2
1,405,960	+		LRK55_RS06500	0.16	-1.0
1,405,960	+		LRK55_RS06500	0.16	-2.3
1,405,961	-		LRK55_RS06500	0.16	-2.3
1,405,961	-		LRK55_RS06500	0.16	-0.3
1,405,961	-		LRK55_RS06500	0.16	-0.7
1,405,961	-		LRK55_RS06500	0.16	-2.3
1,406,061	+		LRK55_RS06500	0.21	-2.0
1,406,062	-		LRK55_RS06500	0.21	-2.1
1,406,062	-		LRK55_RS06500	0.21	-3.5
1,406,062	-		LRK55_RS06500	0.21	-3.3
1,406,223	+		LRK55_RS06500	0.30	-2.1
1,406,223	+		LRK55_RS06500	0.30	-1.5
1,406,223	+		LRK55_RS06500	0.30	-1.0
1,406,223	+		LRK55_RS06500	0.30	-3.0
1,406,224	-		LRK55_RS06500	0.30	-2.1
1,406,224	-		LRK55_RS06500	0.30	-1.0
1,406,224	-		LRK55_RS06500	0.30	-2.6
1,406,224	-		LRK55_RS06500	0.30	-3.0
1,406,224	-		LRK55_RS06500	0.30	-1.5
1,406,224	-		LRK55_RS06500	0.30	-1.5
1,406,319	+		LRK55_RS06500	0.35	-1.7
1,406,320	-		LRK55_RS06500	0.35	-1.3
1,406,623	-		LRK55_RS06500	0.51	-1.8
1,406,647	-		LRK55_RS06500	0.52	-1.5
1,406,707	-		LRK55_RS06500	0.55	-0.3
1,406,707	-		LRK55_RS06500	0.55	-2.1
1,406,835	+		LRK55_RS06500	0.62	-3.3
1,406,835	+		LRK55_RS06500	0.62	-1.3
1,406,835	+		LRK55_RS06500	0.62	-2.6
1,406,835	+		LRK55_RS06500	0.62	-2.0
1,406,835	+		LRK55_RS06500	0.62	-1.5
1,406,835	+		LRK55_RS06500	0.62	-3.6
1,406,835	+		LRK55_RS06500	0.62	-1.7
1,406,835	+		LRK55_RS06500	0.62	-0.5
1,406,835	+		LRK55_RS06500	0.62	-2.5
1,406,835	+		LRK55_RS06500	0.62	-1.3
1,406,835	+		LRK55_RS06500	0.62	-2.6
1,406,835	+		LRK55_RS06500	0.62	-3.1
1,406,835	+		LRK55_RS06500	0.62	-2.5
1,406,835	+		LRK55_RS06500	0.62	-3.8
1,406,835	+		LRK55_RS06500	0.62	-0.7
1,406,835	+		LRK55_RS06500	0.62	-1.5
1,406,835	+		LRK55_RS06500	0.62	-0.7
1,406,835	+		LRK55_RS06500	0.62	-2.4
1,406,835	+		LRK55_RS06500	0.62	-2.8
1,406,835	+		LRK55_RS06500	0.62	-1.3
1,406,835	+		LRK55_RS06500	0.62	-2.0
1,406,835	+		LRK55_RS06500	0.62	-0.7
1,406,836	-		LRK55_RS06500	0.62	-2.6
1,406,836	-		LRK55_RS06500	0.62	-1.0
1,406,836	-		LRK55_RS06500	0.62	-2.6
1,406,836	-		LRK55_RS06500	0.62	-3.8
1,406,836	-		LRK55_RS06500	0.62	-1.3
1,406,836	-		LRK55_RS06500	0.62	-2.4
1,406,836	-		LRK55_RS06500	0.62	-2.1
1,406,836	-		LRK55_RS06500	0.62	-2.1
1,406,836	-		LRK55_RS06500	0.62	-2.8
1,406,836	-		LRK55_RS06500	0.62	-0.7
1,406,836	-		LRK55_RS06500	0.62	-3.7
1,406,836	-		LRK55_RS06500	0.62	-3.5
1,406,938	-		LRK55_RS06500	0.67	-2.8
1,407,027	+		LRK55_RS06500	0.72	-3.6
1,407,027	+		LRK55_RS06500	0.72	-1.7
1,407,027	+		LRK55_RS06500	0.72	-2.7
1,407,027	+		LRK55_RS06500	0.72	-1.3
1,407,027	+		LRK55_RS06500	0.72	-2.5
1,407,027	+		LRK55_RS06500	0.72	-1.7
1,407,027	+		LRK55_RS06500	0.72	-1.3
1,407,027	+		LRK55_RS06500	0.72	-3.5
1,407,028	-		LRK55_RS06500	0.72	-2.4
1,407,028	-		LRK55_RS06500	0.72	-3.8
1,407,028	-		LRK55_RS06500	0.72	-0.5
1,407,028	-		LRK55_RS06500	0.72	-3.2
1,407,028	-		LRK55_RS06500	0.72	+0.2
1,407,028	-		LRK55_RS06500	0.72	-2.3
1,407,028	-		LRK55_RS06500	0.72	-2.4
1,407,028	-		LRK55_RS06500	0.72	-2.6
1,407,028	-		LRK55_RS06500	0.72	-3.3
1,407,028	-		LRK55_RS06500	0.72	-3.6
1,407,028	-		LRK55_RS06500	0.72	-1.8
1,407,034	-		LRK55_RS06500	0.72	-2.5
1,407,034	-		LRK55_RS06500	0.72	-2.6
1,407,034	-		LRK55_RS06500	0.72	-1.0
1,407,034	-		LRK55_RS06500	0.72	-1.8
1,407,117	+		LRK55_RS06500	0.77	-2.4
1,407,117	+		LRK55_RS06500	0.77	-0.3
1,407,117	+		LRK55_RS06500	0.77	-0.3
1,407,117	+		LRK55_RS06500	0.77	-1.3
1,407,118	-		LRK55_RS06500	0.77	-1.0
1,407,118	-		LRK55_RS06500	0.77	-1.3
1,407,150	+		LRK55_RS06500	0.79	-0.3
1,407,150	+		LRK55_RS06500	0.79	-3.3
1,407,150	+		LRK55_RS06500	0.79	-3.5
1,407,151	-		LRK55_RS06500	0.79	-1.5
1,407,151	-		LRK55_RS06500	0.79	-2.5
1,407,312	+		LRK55_RS06500	0.87	-2.7
1,407,312	+		LRK55_RS06500	0.87	-0.7
1,407,312	+		LRK55_RS06500	0.87	-4.1
1,407,313	-		LRK55_RS06500	0.87	-1.7
1,407,313	-		LRK55_RS06500	0.87	-0.7
1,407,656	+				-0.5
1,407,657	-				+0.3
1,407,657	-				-2.1
1,407,657	-				-0.3
1,407,774	+				-0.3
1,407,774	+				+1.0
1,407,774	+				+0.5
1,407,774	+				+0.6
1,407,774	+				+0.6
1,407,775	-				-0.6
1,407,775	-				+0.1
1,407,775	-				-0.3
1,407,775	-				-0.8
1,407,775	-				-1.9
1,407,909	+		LRK55_RS06505	0.33	-2.5
1,407,909	+		LRK55_RS06505	0.33	-1.8
1,407,909	+		LRK55_RS06505	0.33	-0.4
1,407,909	+		LRK55_RS06505	0.33	-0.7
1,407,910	-		LRK55_RS06505	0.33	+1.6
1,408,156	+		LRK55_RS06505	0.79	-0.0