Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06410

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS06405 and LRK55_RS06410 are separated by 191 nucleotidesLRK55_RS06410 and LRK55_RS06415 are separated by 28 nucleotidesLRK55_RS06415 and LRK55_RS06420 are separated by 128 nucleotides LRK55_RS06405: LRK55_RS06405 - DUF2333 family protein, at 1,384,860 to 1,385,882 _RS06405 LRK55_RS06410: LRK55_RS06410 - zinc-binding alcohol dehydrogenase family protein, at 1,386,074 to 1,387,090 _RS06410 LRK55_RS06415: LRK55_RS06415 - DUF892 family protein, at 1,387,119 to 1,387,715 _RS06415 LRK55_RS06420: LRK55_RS06420 - TetR/AcrR family transcriptional regulator, at 1,387,844 to 1,388,491 _RS06420 Position (kb) 1386 1387 1388Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1385.116 kb on + strand, within LRK55_RS06405at 1385.116 kb on + strand, within LRK55_RS06405at 1385.131 kb on + strand, within LRK55_RS06405at 1385.131 kb on + strand, within LRK55_RS06405at 1385.132 kb on - strand, within LRK55_RS06405at 1385.132 kb on - strand, within LRK55_RS06405at 1385.132 kb on - strand, within LRK55_RS06405at 1385.132 kb on - strand, within LRK55_RS06405at 1385.311 kb on + strand, within LRK55_RS06405at 1385.311 kb on + strand, within LRK55_RS06405at 1385.311 kb on + strand, within LRK55_RS06405at 1385.311 kb on + strand, within LRK55_RS06405at 1385.312 kb on - strand, within LRK55_RS06405at 1385.312 kb on - strand, within LRK55_RS06405at 1385.338 kb on + strand, within LRK55_RS06405at 1385.338 kb on + strand, within LRK55_RS06405at 1385.338 kb on + strand, within LRK55_RS06405at 1385.339 kb on - strand, within LRK55_RS06405at 1385.339 kb on - strand, within LRK55_RS06405at 1385.339 kb on - strand, within LRK55_RS06405at 1385.339 kb on - strand, within LRK55_RS06405at 1385.383 kb on + strand, within LRK55_RS06405at 1385.383 kb on + strand, within LRK55_RS06405at 1385.383 kb on + strand, within LRK55_RS06405at 1385.914 kb on + strandat 1385.914 kb on + strandat 1385.914 kb on + strandat 1385.914 kb on + strandat 1385.915 kb on - strandat 1385.915 kb on - strandat 1385.915 kb on - strandat 1385.915 kb on - strandat 1385.915 kb on - strandat 1385.962 kb on + strandat 1385.962 kb on + strandat 1385.962 kb on + strandat 1385.988 kb on - strandat 1386.335 kb on + strand, within LRK55_RS06410at 1386.335 kb on + strand, within LRK55_RS06410at 1386.335 kb on + strand, within LRK55_RS06410at 1386.335 kb on + strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.336 kb on - strand, within LRK55_RS06410at 1386.338 kb on + strand, within LRK55_RS06410at 1386.338 kb on + strand, within LRK55_RS06410at 1386.338 kb on + strand, within LRK55_RS06410at 1386.338 kb on + strand, within LRK55_RS06410at 1386.338 kb on + strand, within LRK55_RS06410at 1386.339 kb on - strand, within LRK55_RS06410at 1386.755 kb on + strand, within LRK55_RS06410at 1386.755 kb on + strand, within LRK55_RS06410at 1386.755 kb on + strand, within LRK55_RS06410at 1386.755 kb on + strand, within LRK55_RS06410at 1386.755 kb on + strand, within LRK55_RS06410at 1386.756 kb on - strand, within LRK55_RS06410at 1386.756 kb on - strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.758 kb on + strand, within LRK55_RS06410at 1386.759 kb on - strand, within LRK55_RS06410at 1386.759 kb on - strand, within LRK55_RS06410at 1386.759 kb on - strand, within LRK55_RS06410at 1386.848 kb on + strand, within LRK55_RS06410at 1386.848 kb on + strand, within LRK55_RS06410at 1386.848 kb on + strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1386.849 kb on - strand, within LRK55_RS06410at 1387.283 kb on - strand, within LRK55_RS06415at 1387.300 kb on + strand, within LRK55_RS06415at 1387.300 kb on + strand, within LRK55_RS06415at 1387.301 kb on - strand, within LRK55_RS06415at 1387.301 kb on - strand, within LRK55_RS06415at 1387.301 kb on - strand, within LRK55_RS06415at 1387.301 kb on - strand, within LRK55_RS06415at 1387.372 kb on + strand, within LRK55_RS06415at 1387.372 kb on + strand, within LRK55_RS06415at 1387.372 kb on + strand, within LRK55_RS06415at 1387.373 kb on - strand, within LRK55_RS06415at 1387.373 kb on - strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.534 kb on + strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.535 kb on - strand, within LRK55_RS06415at 1387.537 kb on + strand, within LRK55_RS06415at 1387.537 kb on + strand, within LRK55_RS06415at 1387.537 kb on + strand, within LRK55_RS06415at 1387.537 kb on + strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.538 kb on - strand, within LRK55_RS06415at 1387.540 kb on - strand, within LRK55_RS06415at 1387.543 kb on + strand, within LRK55_RS06415at 1387.543 kb on + strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.544 kb on - strand, within LRK55_RS06415at 1387.549 kb on + strand, within LRK55_RS06415at 1387.549 kb on + strand, within LRK55_RS06415at 1387.549 kb on + strand, within LRK55_RS06415at 1387.550 kb on - strand, within LRK55_RS06415at 1387.550 kb on - strand, within LRK55_RS06415at 1387.780 kb on + strandat 1387.780 kb on + strandat 1387.780 kb on + strandat 1387.780 kb on + strandat 1387.781 kb on - strandat 1387.781 kb on - strandat 1387.914 kb on + strand, within LRK55_RS06420at 1387.914 kb on + strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420at 1387.915 kb on - strand, within LRK55_RS06420

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,385,116 + LRK55_RS06405 0.25 +0.4
1,385,116 + LRK55_RS06405 0.25 +0.6
1,385,131 + LRK55_RS06405 0.26 -1.1
1,385,131 + LRK55_RS06405 0.26 +0.9
1,385,132 - LRK55_RS06405 0.27 -0.6
1,385,132 - LRK55_RS06405 0.27 -1.5
1,385,132 - LRK55_RS06405 0.27 +1.3
1,385,132 - LRK55_RS06405 0.27 -0.6
1,385,311 + LRK55_RS06405 0.44 +3.1
1,385,311 + LRK55_RS06405 0.44 +0.4
1,385,311 + LRK55_RS06405 0.44 -0.6
1,385,311 + LRK55_RS06405 0.44 +0.8
1,385,312 - LRK55_RS06405 0.44 +0.3
1,385,312 - LRK55_RS06405 0.44 -1.3
1,385,338 + LRK55_RS06405 0.47 -1.7
1,385,338 + LRK55_RS06405 0.47 -0.2
1,385,338 + LRK55_RS06405 0.47 +0.6
1,385,339 - LRK55_RS06405 0.47 +0.0
1,385,339 - LRK55_RS06405 0.47 -0.1
1,385,339 - LRK55_RS06405 0.47 -1.7
1,385,339 - LRK55_RS06405 0.47 -1.6
1,385,383 + LRK55_RS06405 0.51 +0.6
1,385,383 + LRK55_RS06405 0.51 -3.0
1,385,383 + LRK55_RS06405 0.51 -0.1
1,385,914 + +1.5
1,385,914 + -0.1
1,385,914 + -0.3
1,385,914 + -1.8
1,385,915 - +1.0
1,385,915 - +1.4
1,385,915 - -2.5
1,385,915 - +0.2
1,385,915 - -0.2
1,385,962 + -0.8
1,385,962 + +0.8
1,385,962 + +0.0
1,385,988 - +1.0
1,386,335 + LRK55_RS06410 0.26 +0.5
1,386,335 + LRK55_RS06410 0.26 +0.1
1,386,335 + LRK55_RS06410 0.26 -0.7
1,386,335 + LRK55_RS06410 0.26 -0.4
1,386,336 - LRK55_RS06410 0.26 +0.8
1,386,336 - LRK55_RS06410 0.26 +1.3
1,386,336 - LRK55_RS06410 0.26 -3.9
1,386,336 - LRK55_RS06410 0.26 -0.4
1,386,336 - LRK55_RS06410 0.26 +1.0
1,386,336 - LRK55_RS06410 0.26 +0.4
1,386,338 + LRK55_RS06410 0.26 +0.3
1,386,338 + LRK55_RS06410 0.26 -0.2
1,386,338 + LRK55_RS06410 0.26 -0.6
1,386,338 + LRK55_RS06410 0.26 -1.8
1,386,338 + LRK55_RS06410 0.26 -0.7
1,386,339 - LRK55_RS06410 0.26 +0.5
1,386,755 + LRK55_RS06410 0.67 +0.9
1,386,755 + LRK55_RS06410 0.67 -0.7
1,386,755 + LRK55_RS06410 0.67 -0.7
1,386,755 + LRK55_RS06410 0.67 +0.1
1,386,755 + LRK55_RS06410 0.67 +0.7
1,386,756 - LRK55_RS06410 0.67 +3.1
1,386,756 - LRK55_RS06410 0.67 -0.9
1,386,758 + LRK55_RS06410 0.67 -0.5
1,386,758 + LRK55_RS06410 0.67 -0.1
1,386,758 + LRK55_RS06410 0.67 +0.3
1,386,758 + LRK55_RS06410 0.67 +0.4
1,386,758 + LRK55_RS06410 0.67 -2.4
1,386,758 + LRK55_RS06410 0.67 +0.6
1,386,759 - LRK55_RS06410 0.67 +1.3
1,386,759 - LRK55_RS06410 0.67 +0.1
1,386,759 - LRK55_RS06410 0.67 -0.3
1,386,848 + LRK55_RS06410 0.76 +0.5
1,386,848 + LRK55_RS06410 0.76 +0.3
1,386,848 + LRK55_RS06410 0.76 -0.3
1,386,849 - LRK55_RS06410 0.76 -3.1
1,386,849 - LRK55_RS06410 0.76 +0.9
1,386,849 - LRK55_RS06410 0.76 +0.7
1,386,849 - LRK55_RS06410 0.76 +2.5
1,386,849 - LRK55_RS06410 0.76 +0.3
1,386,849 - LRK55_RS06410 0.76 -0.9
1,387,283 - LRK55_RS06415 0.27 +1.0
1,387,300 + LRK55_RS06415 0.30 +0.4
1,387,300 + LRK55_RS06415 0.30 -0.7
1,387,301 - LRK55_RS06415 0.30 +0.5
1,387,301 - LRK55_RS06415 0.30 +1.0
1,387,301 - LRK55_RS06415 0.30 -2.8
1,387,301 - LRK55_RS06415 0.30 -0.3
1,387,372 + LRK55_RS06415 0.42 -1.8
1,387,372 + LRK55_RS06415 0.42 +0.4
1,387,372 + LRK55_RS06415 0.42 -1.0
1,387,373 - LRK55_RS06415 0.43 -3.3
1,387,373 - LRK55_RS06415 0.43 +0.0
1,387,534 + LRK55_RS06415 0.70 -0.4
1,387,534 + LRK55_RS06415 0.70 -0.6
1,387,534 + LRK55_RS06415 0.70 -0.5
1,387,534 + LRK55_RS06415 0.70 +1.4
1,387,534 + LRK55_RS06415 0.70 +0.1
1,387,534 + LRK55_RS06415 0.70 -0.6
1,387,534 + LRK55_RS06415 0.70 -0.8
1,387,534 + LRK55_RS06415 0.70 -0.6
1,387,534 + LRK55_RS06415 0.70 +0.7
1,387,534 + LRK55_RS06415 0.70 -1.3
1,387,534 + LRK55_RS06415 0.70 -2.0
1,387,534 + LRK55_RS06415 0.70 -2.0
1,387,534 + LRK55_RS06415 0.70 +1.7
1,387,534 + LRK55_RS06415 0.70 -0.6
1,387,534 + LRK55_RS06415 0.70 -2.3
1,387,534 + LRK55_RS06415 0.70 -0.3
1,387,534 + LRK55_RS06415 0.70 +1.1
1,387,534 + LRK55_RS06415 0.70 +0.2
1,387,534 + LRK55_RS06415 0.70 -1.5
1,387,534 + LRK55_RS06415 0.70 +0.9
1,387,534 + LRK55_RS06415 0.70 +1.3
1,387,534 + LRK55_RS06415 0.70 +0.6
1,387,534 + LRK55_RS06415 0.70 +1.0
1,387,534 + LRK55_RS06415 0.70 +0.6
1,387,534 + LRK55_RS06415 0.70 +0.1
1,387,535 - LRK55_RS06415 0.70 -0.2
1,387,535 - LRK55_RS06415 0.70 +0.5
1,387,535 - LRK55_RS06415 0.70 +1.8
1,387,535 - LRK55_RS06415 0.70 -0.0
1,387,535 - LRK55_RS06415 0.70 +0.1
1,387,535 - LRK55_RS06415 0.70 -0.6
1,387,535 - LRK55_RS06415 0.70 +0.9
1,387,535 - LRK55_RS06415 0.70 -2.0
1,387,535 - LRK55_RS06415 0.70 +0.1
1,387,535 - LRK55_RS06415 0.70 +0.6
1,387,535 - LRK55_RS06415 0.70 +0.3
1,387,535 - LRK55_RS06415 0.70 +0.3
1,387,535 - LRK55_RS06415 0.70 +0.9
1,387,535 - LRK55_RS06415 0.70 +0.0
1,387,535 - LRK55_RS06415 0.70 +0.4
1,387,535 - LRK55_RS06415 0.70 -0.3
1,387,535 - LRK55_RS06415 0.70 +0.5
1,387,535 - LRK55_RS06415 0.70 -1.7
1,387,535 - LRK55_RS06415 0.70 +0.9
1,387,535 - LRK55_RS06415 0.70 +0.4
1,387,535 - LRK55_RS06415 0.70 +0.8
1,387,535 - LRK55_RS06415 0.70 -0.5
1,387,535 - LRK55_RS06415 0.70 +0.2
1,387,535 - LRK55_RS06415 0.70 +2.8
1,387,535 - LRK55_RS06415 0.70 +0.8
1,387,535 - LRK55_RS06415 0.70 +2.1
1,387,535 - LRK55_RS06415 0.70 +1.0
1,387,535 - LRK55_RS06415 0.70 +0.9
1,387,535 - LRK55_RS06415 0.70 +0.1
1,387,535 - LRK55_RS06415 0.70 +1.3
1,387,535 - LRK55_RS06415 0.70 -1.1
1,387,537 + LRK55_RS06415 0.70 +0.8
1,387,537 + LRK55_RS06415 0.70 +0.3
1,387,537 + LRK55_RS06415 0.70 +0.2
1,387,537 + LRK55_RS06415 0.70 -2.7
1,387,538 - LRK55_RS06415 0.70 +0.5
1,387,538 - LRK55_RS06415 0.70 -2.1
1,387,538 - LRK55_RS06415 0.70 -0.1
1,387,538 - LRK55_RS06415 0.70 -0.5
1,387,538 - LRK55_RS06415 0.70 -0.6
1,387,538 - LRK55_RS06415 0.70 +0.9
1,387,538 - LRK55_RS06415 0.70 +1.3
1,387,538 - LRK55_RS06415 0.70 -1.1
1,387,538 - LRK55_RS06415 0.70 -0.9
1,387,538 - LRK55_RS06415 0.70 +1.3
1,387,538 - LRK55_RS06415 0.70 -1.8
1,387,540 - LRK55_RS06415 0.71 +0.3
1,387,543 + LRK55_RS06415 0.71 +1.0
1,387,543 + LRK55_RS06415 0.71 -1.7
1,387,544 - LRK55_RS06415 0.71 +1.1
1,387,544 - LRK55_RS06415 0.71 +0.0
1,387,544 - LRK55_RS06415 0.71 -0.7
1,387,544 - LRK55_RS06415 0.71 +0.6
1,387,544 - LRK55_RS06415 0.71 +0.8
1,387,544 - LRK55_RS06415 0.71 +0.5
1,387,544 - LRK55_RS06415 0.71 -3.8
1,387,544 - LRK55_RS06415 0.71 +1.1
1,387,544 - LRK55_RS06415 0.71 -1.2
1,387,544 - LRK55_RS06415 0.71 -0.7
1,387,544 - LRK55_RS06415 0.71 -1.6
1,387,544 - LRK55_RS06415 0.71 -0.6
1,387,544 - LRK55_RS06415 0.71 -1.2
1,387,544 - LRK55_RS06415 0.71 -0.5
1,387,549 + LRK55_RS06415 0.72 -0.2
1,387,549 + LRK55_RS06415 0.72 -0.5
1,387,549 + LRK55_RS06415 0.72 -1.7
1,387,550 - LRK55_RS06415 0.72 +3.2
1,387,550 - LRK55_RS06415 0.72 +0.1
1,387,780 + +0.3
1,387,780 + +0.5
1,387,780 + -0.3
1,387,780 + +1.3
1,387,781 - +1.8
1,387,781 - +1.1
1,387,914 + LRK55_RS06420 0.11 -2.5
1,387,914 + LRK55_RS06420 0.11 -2.4
1,387,915 - LRK55_RS06420 0.11 -1.3
1,387,915 - LRK55_RS06420 0.11 -0.7
1,387,915 - LRK55_RS06420 0.11 -0.7
1,387,915 - LRK55_RS06420 0.11 -0.3
1,387,915 - LRK55_RS06420 0.11 -1.3
1,387,915 - LRK55_RS06420 0.11 -2.5

Or see this region's nucleotide sequence