Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06175

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,328,583	-				+1.5
1,328,762	-				-0.6
1,328,769	-				-0.3
1,328,778	-				-1.8
1,328,778	-				-2.5
1,328,799	-				-1.2
1,328,799	-				-1.0
1,328,799	-				+0.6
1,328,799	-				+1.2
1,328,799	-				+0.2
1,328,799	-				-0.2
1,328,799	-				-1.6
1,328,799	-				+0.7
1,329,105	-		LRK55_RS06175	0.15	+0.2
1,329,105	-		LRK55_RS06175	0.15	-2.1
1,329,105	-		LRK55_RS06175	0.15	+0.5
1,329,105	-		LRK55_RS06175	0.15	+0.8
1,329,105	-		LRK55_RS06175	0.15	+1.1
1,329,105	-		LRK55_RS06175	0.15	+1.0
1,329,105	-		LRK55_RS06175	0.15	-0.3
1,329,212	+		LRK55_RS06175	0.23	+0.4
1,329,212	+		LRK55_RS06175	0.23	+1.3
1,329,212	+		LRK55_RS06175	0.23	-0.1
1,329,213	-		LRK55_RS06175	0.23	-1.7
1,329,213	-		LRK55_RS06175	0.23	-1.7
1,329,213	-		LRK55_RS06175	0.23	+3.5
1,329,213	-		LRK55_RS06175	0.23	-0.1
1,329,401	+		LRK55_RS06175	0.36	-1.1
1,329,401	+		LRK55_RS06175	0.36	+0.2
1,329,401	+		LRK55_RS06175	0.36	-2.1
1,329,402	-		LRK55_RS06175	0.37	-0.8
1,329,402	-		LRK55_RS06175	0.37	-0.2
1,329,402	-		LRK55_RS06175	0.37	-1.0
1,329,402	-		LRK55_RS06175	0.37	-2.0
1,329,402	-		LRK55_RS06175	0.37	+1.3
1,329,729	+		LRK55_RS06175	0.60	-0.4
1,329,729	+		LRK55_RS06175	0.60	-0.5
1,329,729	+		LRK55_RS06175	0.60	+0.3
1,329,729	+		LRK55_RS06175	0.60	+0.5
1,329,729	+		LRK55_RS06175	0.60	-1.8
1,329,729	+		LRK55_RS06175	0.60	+0.8
1,329,730	-		LRK55_RS06175	0.60	-0.4
1,329,730	-		LRK55_RS06175	0.60	-0.7
1,329,730	-		LRK55_RS06175	0.60	-1.3
1,330,277	+				-0.3
1,330,277	+				-1.8
1,330,292	+				+0.5
1,330,292	+				+1.3
1,330,292	+				-3.1
1,330,292	+				+1.2
1,330,293	-				-0.3
1,330,293	-				+0.5
1,330,293	-				+1.3
1,330,293	-				+1.1
1,330,293	-				+0.4
1,330,293	-				-0.9
1,330,477	+				-0.8
1,330,477	+				+0.7
1,330,477	+				-0.7
1,330,477	+				+1.3
1,330,477	+				-1.8
1,330,478	-				+0.6
1,330,478	-				+0.4
1,330,478	-				+0.8
1,330,478	-				+1.1
1,330,518	+				-0.7
1,330,518	+				+1.9
1,330,518	+				+1.4
1,330,518	+				+0.9
1,330,519	-				-0.1
1,330,519	-				-0.5
1,330,519	-				-1.0
1,330,519	-				+0.4
1,330,519	-				-0.1
1,330,980	+		LRK55_RS06180	0.31	-1.8
1,330,980	+		LRK55_RS06180	0.31	+0.3
1,330,980	+		LRK55_RS06180	0.31	-1.3
1,330,980	+		LRK55_RS06180	0.31	-1.5
1,330,980	+		LRK55_RS06180	0.31	+0.6
1,330,980	+		LRK55_RS06180	0.31	+0.3
1,330,980	+		LRK55_RS06180	0.31	-0.3
1,330,980	+		LRK55_RS06180	0.31	-0.8
1,330,980	+		LRK55_RS06180	0.31	+0.4
1,330,980	+		LRK55_RS06180	0.31	-1.8
1,330,980	+		LRK55_RS06180	0.31	-0.3
1,330,980	+		LRK55_RS06180	0.31	+0.4
1,330,980	+		LRK55_RS06180	0.31	-1.6
1,330,980	+		LRK55_RS06180	0.31	-2.8
1,330,980	+		LRK55_RS06180	0.31	-0.7
1,330,980	+		LRK55_RS06180	0.31	+1.2
1,330,980	+		LRK55_RS06180	0.31	+0.2
1,330,980	+		LRK55_RS06180	0.31	-1.1
1,330,980	+		LRK55_RS06180	0.31	+1.7
1,330,980	+		LRK55_RS06180	0.31	+1.0
1,330,980	+		LRK55_RS06180	0.31	+0.9
1,330,980	+		LRK55_RS06180	0.31	+0.3
1,330,980	+		LRK55_RS06180	0.31	-1.1
1,330,980	+		LRK55_RS06180	0.31	-1.1
1,330,980	+		LRK55_RS06180	0.31	+1.3
1,330,980	+		LRK55_RS06180	0.31	-1.7
1,330,981	-		LRK55_RS06180	0.31	+1.1
1,330,981	-		LRK55_RS06180	0.31	-1.0
1,330,981	-		LRK55_RS06180	0.31	-1.0
1,330,981	-		LRK55_RS06180	0.31	-0.3
1,330,981	-		LRK55_RS06180	0.31	+1.7
1,330,981	-		LRK55_RS06180	0.31	+0.3
1,330,981	-		LRK55_RS06180	0.31	-0.9
1,330,981	-		LRK55_RS06180	0.31	-2.0
1,330,981	-		LRK55_RS06180	0.31	-1.3
1,330,981	-		LRK55_RS06180	0.31	+1.5
1,330,981	-		LRK55_RS06180	0.31	-0.6
1,330,981	-		LRK55_RS06180	0.31	+0.0
1,330,981	-		LRK55_RS06180	0.31	-1.6
1,330,981	-		LRK55_RS06180	0.31	+0.5
1,330,981	-		LRK55_RS06180	0.31	-1.5
1,330,981	-		LRK55_RS06180	0.31	-2.3
1,330,981	-		LRK55_RS06180	0.31	+2.0
1,330,981	-		LRK55_RS06180	0.31	+0.0
1,330,981	-		LRK55_RS06180	0.31	-2.3
1,330,983	+		LRK55_RS06180	0.31	+1.3
1,330,983	+		LRK55_RS06180	0.31	-0.4
1,330,984	-		LRK55_RS06180	0.31	-2.2
1,330,984	-		LRK55_RS06180	0.31	-2.0
1,330,984	-		LRK55_RS06180	0.31	-0.5
1,331,040	+		LRK55_RS06180	0.35	-2.8
1,331,040	+		LRK55_RS06180	0.35	+0.4
1,331,040	+		LRK55_RS06180	0.35	-0.8
1,331,040	+		LRK55_RS06180	0.35	-0.5
1,331,040	+		LRK55_RS06180	0.35	-0.3
1,331,040	+		LRK55_RS06180	0.35	-1.8
1,331,041	-		LRK55_RS06180	0.35	-0.6
1,331,041	-		LRK55_RS06180	0.35	+1.7
1,331,041	-		LRK55_RS06180	0.35	+2.1
1,331,041	-		LRK55_RS06180	0.35	+0.0
1,331,041	-		LRK55_RS06180	0.35	+2.7
1,331,041	-		LRK55_RS06180	0.35	-2.9
1,331,073	+		LRK55_RS06180	0.38	-0.3
1,331,073	+		LRK55_RS06180	0.38	-1.6
1,331,073	+		LRK55_RS06180	0.38	-2.4
1,331,074	-		LRK55_RS06180	0.38	-2.3
1,331,074	-		LRK55_RS06180	0.38	+0.0
1,331,074	-		LRK55_RS06180	0.38	-1.3
1,331,074	-		LRK55_RS06180	0.38	-2.5
1,331,133	+		LRK55_RS06180	0.42	+0.2
1,331,133	+		LRK55_RS06180	0.42	+0.5
1,331,133	+		LRK55_RS06180	0.42	+0.8
1,331,133	+		LRK55_RS06180	0.42	+0.3
1,331,133	+		LRK55_RS06180	0.42	+0.7
1,331,133	+		LRK55_RS06180	0.42	-3.3
1,331,133	+		LRK55_RS06180	0.42	+0.3
1,331,133	+		LRK55_RS06180	0.42	+0.2
1,331,133	+		LRK55_RS06180	0.42	-0.5
1,331,133	+		LRK55_RS06180	0.42	-0.5
1,331,133	+		LRK55_RS06180	0.42	-1.3
1,331,133	+		LRK55_RS06180	0.42	-0.8
1,331,134	-		LRK55_RS06180	0.42	+0.3
1,331,134	-		LRK55_RS06180	0.42	-0.2
1,331,134	-		LRK55_RS06180	0.42	-1.5
1,331,134	-		LRK55_RS06180	0.42	+0.9
1,331,286	+		LRK55_RS06180	0.53	-2.8
1,331,286	+		LRK55_RS06180	0.53	-0.8
1,331,286	+		LRK55_RS06180	0.53	+0.8
1,331,287	-		LRK55_RS06180	0.54	+0.0
1,331,287	-		LRK55_RS06180	0.54	+0.0