Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05610

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05605 and LRK55_RS05610 are separated by 109 nucleotidesLRK55_RS05610 and LRK55_RS05615 are separated by 87 nucleotides LRK55_RS05605: LRK55_RS05605 - 4-hydroxyphenylpyruvate dioxygenase, at 1,215,107 to 1,216,192 _RS05605 LRK55_RS05610: LRK55_RS05610 - MarR family transcriptional regulator, at 1,216,302 to 1,216,763 _RS05610 LRK55_RS05615: LRK55_RS05615 - peptide MFS transporter, at 1,216,851 to 1,218,362 _RS05615 Position (kb) 1216 1217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1215.360 kb on + strand, within LRK55_RS05605at 1215.360 kb on + strand, within LRK55_RS05605at 1215.360 kb on + strand, within LRK55_RS05605at 1215.361 kb on - strand, within LRK55_RS05605at 1215.361 kb on - strand, within LRK55_RS05605at 1215.361 kb on - strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.420 kb on + strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.421 kb on - strand, within LRK55_RS05605at 1215.468 kb on + strand, within LRK55_RS05605at 1215.468 kb on + strand, within LRK55_RS05605at 1215.480 kb on + strand, within LRK55_RS05605at 1215.480 kb on + strand, within LRK55_RS05605at 1215.481 kb on - strand, within LRK55_RS05605at 1215.597 kb on + strand, within LRK55_RS05605at 1215.598 kb on - strand, within LRK55_RS05605at 1215.630 kb on + strand, within LRK55_RS05605at 1215.630 kb on + strand, within LRK55_RS05605at 1215.631 kb on - strand, within LRK55_RS05605at 1215.631 kb on - strand, within LRK55_RS05605at 1215.631 kb on - strand, within LRK55_RS05605at 1215.631 kb on - strand, within LRK55_RS05605at 1215.631 kb on - strand, within LRK55_RS05605at 1215.633 kb on + strand, within LRK55_RS05605at 1215.633 kb on + strand, within LRK55_RS05605at 1215.634 kb on - strand, within LRK55_RS05605at 1215.634 kb on - strand, within LRK55_RS05605at 1215.634 kb on - strand, within LRK55_RS05605at 1215.634 kb on - strand, within LRK55_RS05605at 1215.741 kb on + strand, within LRK55_RS05605at 1215.742 kb on - strand, within LRK55_RS05605at 1215.742 kb on - strand, within LRK55_RS05605at 1215.780 kb on + strand, within LRK55_RS05605at 1215.780 kb on + strand, within LRK55_RS05605at 1215.780 kb on + strand, within LRK55_RS05605at 1215.780 kb on + strand, within LRK55_RS05605at 1215.780 kb on + strand, within LRK55_RS05605at 1215.781 kb on - strand, within LRK55_RS05605at 1215.781 kb on - strand, within LRK55_RS05605at 1215.781 kb on - strand, within LRK55_RS05605at 1215.781 kb on - strand, within LRK55_RS05605at 1216.262 kb on - strandat 1216.263 kb on + strandat 1216.426 kb on - strand, within LRK55_RS05610at 1216.438 kb on - strand, within LRK55_RS05610at 1216.485 kb on + strand, within LRK55_RS05610at 1216.826 kb on + strandat 1216.826 kb on + strandat 1216.826 kb on + strandat 1216.826 kb on + strandat 1216.826 kb on + strandat 1216.826 kb on + strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1216.827 kb on - strandat 1217.143 kb on + strand, within LRK55_RS05615at 1217.143 kb on + strand, within LRK55_RS05615at 1217.143 kb on + strand, within LRK55_RS05615at 1217.143 kb on + strand, within LRK55_RS05615at 1217.143 kb on + strand, within LRK55_RS05615at 1217.144 kb on - strand, within LRK55_RS05615at 1217.144 kb on - strand, within LRK55_RS05615at 1217.144 kb on - strand, within LRK55_RS05615at 1217.144 kb on - strand, within LRK55_RS05615at 1217.206 kb on + strand, within LRK55_RS05615at 1217.206 kb on + strand, within LRK55_RS05615at 1217.206 kb on + strand, within LRK55_RS05615at 1217.207 kb on - strand, within LRK55_RS05615at 1217.207 kb on - strand, within LRK55_RS05615at 1217.207 kb on - strand, within LRK55_RS05615at 1217.449 kb on + strand, within LRK55_RS05615at 1217.449 kb on + strand, within LRK55_RS05615at 1217.449 kb on + strand, within LRK55_RS05615at 1217.449 kb on + strand, within LRK55_RS05615at 1217.449 kb on + strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.450 kb on - strand, within LRK55_RS05615at 1217.451 kb on + strand, within LRK55_RS05615at 1217.608 kb on + strand, within LRK55_RS05615at 1217.608 kb on + strand, within LRK55_RS05615at 1217.608 kb on + strand, within LRK55_RS05615at 1217.608 kb on + strand, within LRK55_RS05615at 1217.608 kb on + strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.609 kb on - strand, within LRK55_RS05615at 1217.623 kb on + strand, within LRK55_RS05615at 1217.624 kb on - strand, within LRK55_RS05615

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,215,360 + LRK55_RS05605 0.23 -0.3
1,215,360 + LRK55_RS05605 0.23 +1.3
1,215,360 + LRK55_RS05605 0.23 -0.7
1,215,361 - LRK55_RS05605 0.23 +0.1
1,215,361 - LRK55_RS05605 0.23 +0.1
1,215,361 - LRK55_RS05605 0.23 +0.1
1,215,420 + LRK55_RS05605 0.29 +0.0
1,215,420 + LRK55_RS05605 0.29 -0.4
1,215,420 + LRK55_RS05605 0.29 -0.1
1,215,420 + LRK55_RS05605 0.29 +1.2
1,215,420 + LRK55_RS05605 0.29 +0.1
1,215,420 + LRK55_RS05605 0.29 -0.4
1,215,420 + LRK55_RS05605 0.29 -1.4
1,215,420 + LRK55_RS05605 0.29 -0.2
1,215,421 - LRK55_RS05605 0.29 -0.2
1,215,421 - LRK55_RS05605 0.29 +0.6
1,215,421 - LRK55_RS05605 0.29 +0.9
1,215,421 - LRK55_RS05605 0.29 +0.3
1,215,421 - LRK55_RS05605 0.29 +0.7
1,215,421 - LRK55_RS05605 0.29 +0.8
1,215,421 - LRK55_RS05605 0.29 +0.6
1,215,421 - LRK55_RS05605 0.29 -1.0
1,215,468 + LRK55_RS05605 0.33 +0.6
1,215,468 + LRK55_RS05605 0.33 +0.8
1,215,480 + LRK55_RS05605 0.34 +1.3
1,215,480 + LRK55_RS05605 0.34 +1.1
1,215,481 - LRK55_RS05605 0.34 -0.3
1,215,597 + LRK55_RS05605 0.45 +0.6
1,215,598 - LRK55_RS05605 0.45 -0.1
1,215,630 + LRK55_RS05605 0.48 -1.5
1,215,630 + LRK55_RS05605 0.48 +0.3
1,215,631 - LRK55_RS05605 0.48 +0.7
1,215,631 - LRK55_RS05605 0.48 -0.5
1,215,631 - LRK55_RS05605 0.48 +1.2
1,215,631 - LRK55_RS05605 0.48 -0.1
1,215,631 - LRK55_RS05605 0.48 -0.2
1,215,633 + LRK55_RS05605 0.48 +0.8
1,215,633 + LRK55_RS05605 0.48 -0.3
1,215,634 - LRK55_RS05605 0.49 -1.0
1,215,634 - LRK55_RS05605 0.49 +0.3
1,215,634 - LRK55_RS05605 0.49 +1.5
1,215,634 - LRK55_RS05605 0.49 +1.0
1,215,741 + LRK55_RS05605 0.58 +1.2
1,215,742 - LRK55_RS05605 0.58 -0.9
1,215,742 - LRK55_RS05605 0.58 -0.3
1,215,780 + LRK55_RS05605 0.62 +0.1
1,215,780 + LRK55_RS05605 0.62 -0.3
1,215,780 + LRK55_RS05605 0.62 -0.5
1,215,780 + LRK55_RS05605 0.62 -2.0
1,215,780 + LRK55_RS05605 0.62 +1.0
1,215,781 - LRK55_RS05605 0.62 +1.4
1,215,781 - LRK55_RS05605 0.62 +0.2
1,215,781 - LRK55_RS05605 0.62 +1.9
1,215,781 - LRK55_RS05605 0.62 +0.6
1,216,262 - -1.1
1,216,263 + -1.1
1,216,426 - LRK55_RS05610 0.27 -1.0
1,216,438 - LRK55_RS05610 0.29 +1.8
1,216,485 + LRK55_RS05610 0.40 +0.3
1,216,826 + +0.3
1,216,826 + +0.3
1,216,826 + +0.9
1,216,826 + +0.2
1,216,826 + -2.8
1,216,826 + +0.1
1,216,827 - +0.0
1,216,827 - -1.1
1,216,827 - +1.9
1,216,827 - +0.4
1,216,827 - -1.5
1,216,827 - +0.4
1,216,827 - -1.7
1,217,143 + LRK55_RS05615 0.19 +0.9
1,217,143 + LRK55_RS05615 0.19 +0.5
1,217,143 + LRK55_RS05615 0.19 -0.3
1,217,143 + LRK55_RS05615 0.19 +0.6
1,217,143 + LRK55_RS05615 0.19 +0.2
1,217,144 - LRK55_RS05615 0.19 +0.8
1,217,144 - LRK55_RS05615 0.19 +0.3
1,217,144 - LRK55_RS05615 0.19 -1.5
1,217,144 - LRK55_RS05615 0.19 -2.2
1,217,206 + LRK55_RS05615 0.23 +2.7
1,217,206 + LRK55_RS05615 0.23 +0.2
1,217,206 + LRK55_RS05615 0.23 -3.3
1,217,207 - LRK55_RS05615 0.24 +0.3
1,217,207 - LRK55_RS05615 0.24 +1.3
1,217,207 - LRK55_RS05615 0.24 -0.5
1,217,449 + LRK55_RS05615 0.40 -1.9
1,217,449 + LRK55_RS05615 0.40 -2.3
1,217,449 + LRK55_RS05615 0.40 +0.4
1,217,449 + LRK55_RS05615 0.40 +0.1
1,217,449 + LRK55_RS05615 0.40 -1.1
1,217,450 - LRK55_RS05615 0.40 -0.2
1,217,450 - LRK55_RS05615 0.40 -1.0
1,217,450 - LRK55_RS05615 0.40 +1.7
1,217,450 - LRK55_RS05615 0.40 +0.6
1,217,450 - LRK55_RS05615 0.40 +0.2
1,217,450 - LRK55_RS05615 0.40 -0.5
1,217,450 - LRK55_RS05615 0.40 -3.8
1,217,451 + LRK55_RS05615 0.40 +1.5
1,217,608 + LRK55_RS05615 0.50 +0.4
1,217,608 + LRK55_RS05615 0.50 -1.4
1,217,608 + LRK55_RS05615 0.50 -0.4
1,217,608 + LRK55_RS05615 0.50 +2.6
1,217,608 + LRK55_RS05615 0.50 +1.0
1,217,609 - LRK55_RS05615 0.50 -0.5
1,217,609 - LRK55_RS05615 0.50 +1.6
1,217,609 - LRK55_RS05615 0.50 +0.5
1,217,609 - LRK55_RS05615 0.50 +0.3
1,217,609 - LRK55_RS05615 0.50 -0.4
1,217,609 - LRK55_RS05615 0.50 +0.9
1,217,609 - LRK55_RS05615 0.50 -0.4
1,217,609 - LRK55_RS05615 0.50 +0.5
1,217,609 - LRK55_RS05615 0.50 +0.9
1,217,609 - LRK55_RS05615 0.50 +0.3
1,217,609 - LRK55_RS05615 0.50 +0.9
1,217,609 - LRK55_RS05615 0.50 -1.9
1,217,609 - LRK55_RS05615 0.50 -0.9
1,217,609 - LRK55_RS05615 0.50 +0.6
1,217,609 - LRK55_RS05615 0.50 +0.5
1,217,623 + LRK55_RS05615 0.51 -0.1
1,217,624 - LRK55_RS05615 0.51 +0.3

Or see this region's nucleotide sequence