Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS04380 and LRK55_RS04385 are separated by 71 nucleotides LRK55_RS04385 and LRK55_RS04390 are separated by 127 nucleotides LRK55_RS04390 and LRK55_RS04395 are separated by 2 nucleotides
LRK55_RS04380: LRK55_RS04380 - NAD(P)-dependent alcohol dehydrogenase, at 935,608 to 936,618
_RS04380
LRK55_RS04385: LRK55_RS04385 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 936,690 to 937,751
_RS04385
LRK55_RS04390: LRK55_RS04390 - transcriptional regulator NrdR, at 937,879 to 938,391
_RS04390
LRK55_RS04395: LRK55_RS04395 - CTP synthase, at 938,394 to 939,092
_RS04395
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 935.758 kb on + strand, within LRK55_RS04380 at 935.759 kb on - strand, within LRK55_RS04380 at 935.759 kb on - strand, within LRK55_RS04380 at 935.869 kb on + strand, within LRK55_RS04380 at 935.869 kb on + strand, within LRK55_RS04380 at 935.869 kb on + strand, within LRK55_RS04380 at 935.869 kb on + strand, within LRK55_RS04380 at 935.869 kb on + strand, within LRK55_RS04380 at 935.870 kb on - strand, within LRK55_RS04380 at 935.870 kb on - strand, within LRK55_RS04380 at 935.870 kb on - strand, within LRK55_RS04380 at 935.870 kb on - strand, within LRK55_RS04380 at 935.974 kb on + strand, within LRK55_RS04380 at 935.975 kb on - strand, within LRK55_RS04380 at 935.975 kb on - strand, within LRK55_RS04380 at 936.232 kb on + strand, within LRK55_RS04380 at 936.233 kb on - strand, within LRK55_RS04380 at 936.233 kb on - strand, within LRK55_RS04380 at 936.233 kb on - strand, within LRK55_RS04380 at 936.233 kb on - strand, within LRK55_RS04380 at 936.233 kb on - strand, within LRK55_RS04380 at 936.263 kb on + strand, within LRK55_RS04380 at 936.532 kb on + strand at 936.835 kb on + strand, within LRK55_RS04385 at 936.836 kb on - strand, within LRK55_RS04385 at 937.565 kb on - strand, within LRK55_RS04385 at 937.714 kb on + strand at 938.000 kb on + strand, within LRK55_RS04390 at 938.001 kb on - strand, within LRK55_RS04390 at 938.021 kb on + strand, within LRK55_RS04390 at 938.021 kb on + strand, within LRK55_RS04390 at 938.022 kb on - strand, within LRK55_RS04390 at 938.022 kb on - strand, within LRK55_RS04390 at 938.022 kb on - strand, within LRK55_RS04390 at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.398 kb on + strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.399 kb on - strand at 938.602 kb on + strand, within LRK55_RS04395 at 938.602 kb on + strand, within LRK55_RS04395 at 938.603 kb on - strand, within LRK55_RS04395 at 938.603 kb on - strand, within LRK55_RS04395 at 938.603 kb on - strand, within LRK55_RS04395 at 938.614 kb on + strand, within LRK55_RS04395 at 938.614 kb on + strand, within LRK55_RS04395 at 938.641 kb on + strand, within LRK55_RS04395 at 938.641 kb on + strand, within LRK55_RS04395 at 938.641 kb on + strand, within LRK55_RS04395 at 938.641 kb on + strand, within LRK55_RS04395 at 938.642 kb on - strand, within LRK55_RS04395 at 938.642 kb on - strand, within LRK55_RS04395 at 938.642 kb on - strand, within LRK55_RS04395 at 938.676 kb on + strand, within LRK55_RS04395 at 938.676 kb on + strand, within LRK55_RS04395 at 938.676 kb on + strand, within LRK55_RS04395 at 938.676 kb on + strand, within LRK55_RS04395 at 938.676 kb on + strand, within LRK55_RS04395 at 938.677 kb on - strand, within LRK55_RS04395 at 938.677 kb on - strand, within LRK55_RS04395 at 938.677 kb on - strand, within LRK55_RS04395
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 935,758 + LRK55_RS04380 0.15 +1.1 935,759 - LRK55_RS04380 0.15 -0.7 935,759 - LRK55_RS04380 0.15 +2.0 935,869 + LRK55_RS04380 0.26 +0.0 935,869 + LRK55_RS04380 0.26 +0.7 935,869 + LRK55_RS04380 0.26 +1.3 935,869 + LRK55_RS04380 0.26 -1.6 935,869 + LRK55_RS04380 0.26 -0.6 935,870 - LRK55_RS04380 0.26 -1.5 935,870 - LRK55_RS04380 0.26 +0.7 935,870 - LRK55_RS04380 0.26 +1.0 935,870 - LRK55_RS04380 0.26 +1.2 935,974 + LRK55_RS04380 0.36 -1.5 935,975 - LRK55_RS04380 0.36 -1.3 935,975 - LRK55_RS04380 0.36 -0.5 936,232 + LRK55_RS04380 0.62 -1.1 936,233 - LRK55_RS04380 0.62 -0.1 936,233 - LRK55_RS04380 0.62 +1.0 936,233 - LRK55_RS04380 0.62 -0.6 936,233 - LRK55_RS04380 0.62 +0.8 936,233 - LRK55_RS04380 0.62 +1.5 936,263 + LRK55_RS04380 0.65 -0.2 936,532 + -0.7 936,835 + LRK55_RS04385 0.14 -0.7 936,836 - LRK55_RS04385 0.14 -1.0 937,565 - LRK55_RS04385 0.82 -1.0 937,714 + +0.7 938,000 + LRK55_RS04390 0.24 -1.0 938,001 - LRK55_RS04390 0.24 -1.4 938,021 + LRK55_RS04390 0.28 -1.5 938,021 + LRK55_RS04390 0.28 -1.3 938,022 - LRK55_RS04390 0.28 +0.3 938,022 - LRK55_RS04390 0.28 +0.1 938,022 - LRK55_RS04390 0.28 -2.5 938,398 + -0.6 938,398 + -1.0 938,398 + -2.1 938,398 + -3.0 938,398 + -1.9 938,398 + -1.9 938,398 + -0.9 938,398 + -0.4 938,399 - +0.5 938,399 - +1.1 938,399 - -0.1 938,399 - -1.1 938,399 - -0.1 938,399 - +0.5 938,399 - -1.7 938,399 - +0.3 938,399 - +0.2 938,602 + LRK55_RS04395 0.30 +1.1 938,602 + LRK55_RS04395 0.30 +0.5 938,603 - LRK55_RS04395 0.30 -0.2 938,603 - LRK55_RS04395 0.30 +0.9 938,603 - LRK55_RS04395 0.30 -0.1 938,614 + LRK55_RS04395 0.31 -0.4 938,614 + LRK55_RS04395 0.31 -0.8 938,641 + LRK55_RS04395 0.35 +1.3 938,641 + LRK55_RS04395 0.35 +0.3 938,641 + LRK55_RS04395 0.35 +0.3 938,641 + LRK55_RS04395 0.35 -1.2 938,642 - LRK55_RS04395 0.35 +0.1 938,642 - LRK55_RS04395 0.35 +0.9 938,642 - LRK55_RS04395 0.35 -1.9 938,676 + LRK55_RS04395 0.40 +1.4 938,676 + LRK55_RS04395 0.40 +0.2 938,676 + LRK55_RS04395 0.40 -0.5 938,676 + LRK55_RS04395 0.40 -0.2 938,676 + LRK55_RS04395 0.40 -1.3 938,677 - LRK55_RS04395 0.40 +0.3 938,677 - LRK55_RS04395 0.40 +0.2 938,677 - LRK55_RS04395 0.40 -0.3
Or see this region's nucleotide sequence