Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS04040 and LRK55_RS04045 are separated by 803 nucleotides LRK55_RS04045 and LRK55_RS04050 are separated by 4 nucleotides LRK55_RS04050 and LRK55_RS04055 overlap by 4 nucleotides
LRK55_RS04040: LRK55_RS04040 - IS4 family transposase, at 859,096 to 860,268
_RS04040
LRK55_RS04045: LRK55_RS04045 - ABC transporter substrate-binding protein, at 861,072 to 861,896
_RS04045
LRK55_RS04050: LRK55_RS04050 - secondary thiamine-phosphate synthase enzyme YjbQ, at 861,901 to 862,341
_RS04050
LRK55_RS04055: LRK55_RS04055 - pyridoxamine 5'-phosphate oxidase, at 862,338 to 862,925
_RS04055
Position (kb) 861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 860.996 kb on + strand at 860.996 kb on + strand at 861.436 kb on + strand, within LRK55_RS04045 at 861.436 kb on + strand, within LRK55_RS04045 at 861.436 kb on + strand, within LRK55_RS04045 at 861.436 kb on + strand, within LRK55_RS04045 at 861.436 kb on + strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.437 kb on - strand, within LRK55_RS04045 at 861.511 kb on + strand, within LRK55_RS04045 at 861.562 kb on + strand, within LRK55_RS04045 at 861.562 kb on + strand, within LRK55_RS04045 at 861.563 kb on - strand, within LRK55_RS04045 at 861.563 kb on - strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.603 kb on + strand, within LRK55_RS04045 at 861.604 kb on - strand, within LRK55_RS04045 at 861.808 kb on + strand, within LRK55_RS04045 at 861.809 kb on - strand, within LRK55_RS04045 at 861.965 kb on + strand, within LRK55_RS04050 at 861.965 kb on + strand, within LRK55_RS04050 at 861.965 kb on + strand, within LRK55_RS04050 at 861.965 kb on + strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 861.966 kb on - strand, within LRK55_RS04050 at 862.007 kb on - strand, within LRK55_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 860,996 + +0.8 860,996 + +1.3 861,436 + LRK55_RS04045 0.44 -2.2 861,436 + LRK55_RS04045 0.44 -0.6 861,436 + LRK55_RS04045 0.44 +1.0 861,436 + LRK55_RS04045 0.44 +1.0 861,436 + LRK55_RS04045 0.44 -0.5 861,437 - LRK55_RS04045 0.44 -2.0 861,437 - LRK55_RS04045 0.44 +0.2 861,437 - LRK55_RS04045 0.44 +1.2 861,437 - LRK55_RS04045 0.44 +0.6 861,437 - LRK55_RS04045 0.44 +0.4 861,437 - LRK55_RS04045 0.44 -0.7 861,437 - LRK55_RS04045 0.44 -0.0 861,511 + LRK55_RS04045 0.53 +0.6 861,562 + LRK55_RS04045 0.59 -1.8 861,562 + LRK55_RS04045 0.59 +0.2 861,563 - LRK55_RS04045 0.60 +0.1 861,563 - LRK55_RS04045 0.60 +0.9 861,603 + LRK55_RS04045 0.64 +0.1 861,603 + LRK55_RS04045 0.64 +1.3 861,603 + LRK55_RS04045 0.64 -0.3 861,603 + LRK55_RS04045 0.64 +0.0 861,603 + LRK55_RS04045 0.64 -3.0 861,603 + LRK55_RS04045 0.64 -0.6 861,603 + LRK55_RS04045 0.64 +1.1 861,603 + LRK55_RS04045 0.64 +0.3 861,604 - LRK55_RS04045 0.64 -1.6 861,808 + LRK55_RS04045 0.89 -2.2 861,809 - LRK55_RS04045 0.89 -3.4 861,965 + LRK55_RS04050 0.15 -0.4 861,965 + LRK55_RS04050 0.15 +0.2 861,965 + LRK55_RS04050 0.15 -1.8 861,965 + LRK55_RS04050 0.15 -1.9 861,966 - LRK55_RS04050 0.15 +0.5 861,966 - LRK55_RS04050 0.15 +2.1 861,966 - LRK55_RS04050 0.15 -0.5 861,966 - LRK55_RS04050 0.15 -0.8 861,966 - LRK55_RS04050 0.15 -0.6 861,966 - LRK55_RS04050 0.15 +0.6 861,966 - LRK55_RS04050 0.15 -1.9 861,966 - LRK55_RS04050 0.15 +0.0 861,966 - LRK55_RS04050 0.15 +1.0 862,007 - LRK55_RS04050 0.24 +1.0
Or see this region's nucleotide sequence