Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS03975 and LRK55_RS03980 are separated by 52 nucleotides LRK55_RS03980 and LRK55_RS03985 overlap by 4 nucleotides LRK55_RS03985 and LRK55_RS03990 are separated by 35 nucleotides
LRK55_RS03975: LRK55_RS03975 - energy transducer TonB, at 844,814 to 845,683
_RS03975
LRK55_RS03980: LRK55_RS03980 - YqgE/AlgH family protein, at 845,736 to 846,305
_RS03980
LRK55_RS03985: LRK55_RS03985 - Holliday junction resolvase RuvX, at 846,302 to 846,751
_RS03985
LRK55_RS03990: LRK55_RS03990 - aspartate carbamoyltransferase catalytic subunit, at 846,787 to 847,713
_RS03990
Position (kb) 846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.318 kb on + strand, within LRK55_RS03975 at 845.318 kb on + strand, within LRK55_RS03975 at 845.318 kb on + strand, within LRK55_RS03975 at 845.319 kb on - strand, within LRK55_RS03975 at 845.342 kb on + strand, within LRK55_RS03975 at 845.342 kb on + strand, within LRK55_RS03975 at 845.343 kb on - strand, within LRK55_RS03975 at 845.343 kb on - strand, within LRK55_RS03975 at 845.343 kb on - strand, within LRK55_RS03975 at 845.366 kb on + strand, within LRK55_RS03975 at 845.367 kb on - strand, within LRK55_RS03975 at 845.367 kb on - strand, within LRK55_RS03975 at 845.373 kb on - strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.381 kb on + strand, within LRK55_RS03975 at 845.382 kb on - strand, within LRK55_RS03975 at 845.382 kb on - strand, within LRK55_RS03975 at 845.382 kb on - strand, within LRK55_RS03975 at 845.429 kb on + strand, within LRK55_RS03975 at 845.430 kb on - strand, within LRK55_RS03975 at 845.724 kb on + strand at 845.724 kb on + strand at 845.724 kb on + strand at 845.724 kb on + strand at 845.725 kb on - strand at 845.725 kb on - strand at 845.725 kb on - strand at 846.030 kb on + strand, within LRK55_RS03980 at 846.031 kb on - strand, within LRK55_RS03980 at 846.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 845,318 + LRK55_RS03975 0.58 -2.3 845,318 + LRK55_RS03975 0.58 +2.2 845,318 + LRK55_RS03975 0.58 -1.0 845,319 - LRK55_RS03975 0.58 -0.5 845,342 + LRK55_RS03975 0.61 +0.1 845,342 + LRK55_RS03975 0.61 -1.2 845,343 - LRK55_RS03975 0.61 +2.4 845,343 - LRK55_RS03975 0.61 +0.3 845,343 - LRK55_RS03975 0.61 -0.7 845,366 + LRK55_RS03975 0.63 -1.8 845,367 - LRK55_RS03975 0.64 +1.5 845,367 - LRK55_RS03975 0.64 +0.4 845,373 - LRK55_RS03975 0.64 +0.2 845,381 + LRK55_RS03975 0.65 +2.5 845,381 + LRK55_RS03975 0.65 -2.4 845,381 + LRK55_RS03975 0.65 +0.7 845,381 + LRK55_RS03975 0.65 +1.5 845,381 + LRK55_RS03975 0.65 +0.4 845,381 + LRK55_RS03975 0.65 +1.0 845,381 + LRK55_RS03975 0.65 -0.0 845,382 - LRK55_RS03975 0.65 -0.6 845,382 - LRK55_RS03975 0.65 -1.0 845,382 - LRK55_RS03975 0.65 +1.3 845,429 + LRK55_RS03975 0.71 +1.1 845,430 - LRK55_RS03975 0.71 +1.4 845,724 + +0.7 845,724 + -0.8 845,724 + +0.1 845,724 + +1.2 845,725 - +0.4 845,725 - +0.4 845,725 - +2.3 846,030 + LRK55_RS03980 0.52 -1.3 846,031 - LRK55_RS03980 0.52 +0.3 846,288 + +0.8
Or see this region's nucleotide sequence