Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS03705 and LRK55_RS03710 overlap by 4 nucleotides LRK55_RS03710 and LRK55_RS03715 are separated by 633 nucleotides LRK55_RS03715 and LRK55_RS03720 are separated by 142 nucleotides
LRK55_RS03705: LRK55_RS03705 - type II toxin-antitoxin system VapC family toxin, at 784,024 to 784,419
_RS03705
LRK55_RS03710: LRK55_RS03710 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 784,416 to 784,658
_RS03710
LRK55_RS03715: LRK55_RS03715 - type IV-A pilus assembly ATPase PilB, at 785,292 to 787,016
_RS03715
LRK55_RS03720: LRK55_RS03720 - type II secretion system F family protein, at 787,159 to 788,430
_RS03720
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 784.294 kb on + strand, within LRK55_RS03705 at 784.295 kb on - strand, within LRK55_RS03705 at 784.368 kb on + strand, within LRK55_RS03705 at 784.368 kb on + strand, within LRK55_RS03705 at 784.368 kb on + strand, within LRK55_RS03705 at 784.368 kb on + strand, within LRK55_RS03705 at 784.368 kb on + strand, within LRK55_RS03705 at 784.369 kb on - strand, within LRK55_RS03705 at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.385 kb on + strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.386 kb on - strand at 784.405 kb on - strand at 784.680 kb on + strand at 784.681 kb on - strand at 784.682 kb on + strand at 784.691 kb on - strand at 784.691 kb on - strand at 784.699 kb on - strand at 784.717 kb on + strand at 784.779 kb on + strand at 784.780 kb on - strand at 784.780 kb on - strand at 784.780 kb on - strand at 784.934 kb on - strand at 784.934 kb on - strand at 784.934 kb on - strand at 784.977 kb on + strand at 784.977 kb on + strand at 784.977 kb on + strand at 784.977 kb on + strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.978 kb on - strand at 784.981 kb on + strand at 785.011 kb on + strand at 785.011 kb on + strand at 785.011 kb on + strand at 785.011 kb on + strand at 785.012 kb on - strand at 785.012 kb on - strand at 785.012 kb on - strand at 785.012 kb on - strand at 785.012 kb on - strand at 785.045 kb on + strand at 785.045 kb on + strand at 785.045 kb on + strand at 785.045 kb on + strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.046 kb on - strand at 785.255 kb on - strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.268 kb on + strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.269 kb on - strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.286 kb on + strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.287 kb on - strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.291 kb on + strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.292 kb on - strand at 785.305 kb on + strand at 785.350 kb on + strand at 785.350 kb on + strand at 785.350 kb on + strand at 785.351 kb on - strand at 785.351 kb on - strand at 785.351 kb on - strand at 785.351 kb on - strand at 785.363 kb on - strand at 785.380 kb on + strand at 785.380 kb on + strand at 785.380 kb on + strand at 785.380 kb on + strand at 785.380 kb on + strand at 785.381 kb on - strand at 785.381 kb on - strand at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.613 kb on + strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.614 kb on - strand, within LRK55_RS03715 at 785.949 kb on + strand, within LRK55_RS03715 at 785.950 kb on - strand, within LRK55_RS03715 at 786.222 kb on + strand, within LRK55_RS03715 at 786.247 kb on - strand, within LRK55_RS03715 at 786.247 kb on - strand, within LRK55_RS03715 at 786.247 kb on - strand, within LRK55_RS03715 at 786.247 kb on - strand, within LRK55_RS03715 at 786.324 kb on + strand, within LRK55_RS03715 at 786.324 kb on + strand, within LRK55_RS03715 at 786.324 kb on + strand, within LRK55_RS03715 at 786.324 kb on + strand, within LRK55_RS03715 at 786.325 kb on - strand, within LRK55_RS03715 at 786.633 kb on + strand, within LRK55_RS03715 at 786.633 kb on + strand, within LRK55_RS03715 at 786.634 kb on - strand, within LRK55_RS03715 at 786.634 kb on - strand, within LRK55_RS03715 at 786.634 kb on - strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.780 kb on + strand, within LRK55_RS03715 at 786.781 kb on - strand, within LRK55_RS03715 at 786.781 kb on - strand, within LRK55_RS03715 at 786.781 kb on - strand, within LRK55_RS03715 at 786.781 kb on - strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.816 kb on + strand, within LRK55_RS03715 at 786.817 kb on - strand, within LRK55_RS03715 at 786.817 kb on - strand, within LRK55_RS03715 at 786.817 kb on - strand, within LRK55_RS03715 at 786.817 kb on - strand, within LRK55_RS03715 at 786.833 kb on + strand, within LRK55_RS03715 at 786.833 kb on + strand, within LRK55_RS03715 at 786.833 kb on + strand, within LRK55_RS03715 at 786.833 kb on + strand, within LRK55_RS03715 at 786.834 kb on - strand, within LRK55_RS03715 at 786.834 kb on - strand, within LRK55_RS03715 at 786.834 kb on - strand, within LRK55_RS03715 at 786.837 kb on + strand, within LRK55_RS03715 at 786.837 kb on + strand, within LRK55_RS03715 at 786.837 kb on + strand, within LRK55_RS03715 at 786.837 kb on + strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.838 kb on - strand, within LRK55_RS03715 at 786.844 kb on + strand at 786.844 kb on + strand at 786.845 kb on - strand at 787.088 kb on + strand at 787.088 kb on + strand at 787.088 kb on + strand at 787.088 kb on + strand at 787.088 kb on + strand at 787.088 kb on + strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.089 kb on - strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.101 kb on + strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.102 kb on - strand at 787.119 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.240 kb on + strand at 787.241 kb on - strand at 787.241 kb on - strand at 787.241 kb on - strand at 787.241 kb on - strand at 787.241 kb on - strand at 787.241 kb on - strand at 787.609 kb on + strand, within LRK55_RS03720 at 787.609 kb on + strand, within LRK55_RS03720 at 787.609 kb on + strand, within LRK55_RS03720 at 787.609 kb on + strand, within LRK55_RS03720 at 787.610 kb on - strand, within LRK55_RS03720 at 787.610 kb on - strand, within LRK55_RS03720 at 787.610 kb on - strand, within LRK55_RS03720 at 787.610 kb on - strand, within LRK55_RS03720 at 787.610 kb on - strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.678 kb on + strand, within LRK55_RS03720 at 787.679 kb on - strand, within LRK55_RS03720 at 787.679 kb on - strand, within LRK55_RS03720 at 787.679 kb on - strand, within LRK55_RS03720 at 787.679 kb on - strand, within LRK55_RS03720 at 787.727 kb on + strand, within LRK55_RS03720 at 787.882 kb on + strand, within LRK55_RS03720 at 787.882 kb on + strand, within LRK55_RS03720 at 787.882 kb on + strand, within LRK55_RS03720 at 787.882 kb on + strand, within LRK55_RS03720 at 787.883 kb on - strand, within LRK55_RS03720
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 784,294 + LRK55_RS03705 0.68 -2.4 784,295 - LRK55_RS03705 0.68 +0.7 784,368 + LRK55_RS03705 0.87 -1.0 784,368 + LRK55_RS03705 0.87 -1.9 784,368 + LRK55_RS03705 0.87 +1.6 784,368 + LRK55_RS03705 0.87 -0.5 784,368 + LRK55_RS03705 0.87 -0.3 784,369 - LRK55_RS03705 0.87 -0.7 784,385 + +0.8 784,385 + -1.9 784,385 + -0.6 784,385 + +1.1 784,385 + -0.0 784,385 + +0.5 784,385 + +0.4 784,385 + -3.0 784,385 + +0.4 784,385 + -1.0 784,385 + -0.9 784,386 - +0.4 784,386 - +0.7 784,386 - +0.7 784,386 - +0.3 784,386 - +1.8 784,386 - -0.7 784,386 - -2.4 784,386 - +1.4 784,386 - +0.2 784,405 - +1.8 784,680 + +0.4 784,681 - +1.7 784,682 + -1.5 784,691 - +1.5 784,691 - -1.5 784,699 - +0.3 784,717 + -1.3 784,779 + +0.9 784,780 - +1.8 784,780 - -0.0 784,780 - +0.6 784,934 - +0.0 784,934 - -1.2 784,934 - -0.2 784,977 + +0.7 784,977 + -1.7 784,977 + -1.5 784,977 + -1.4 784,978 - +0.5 784,978 - -0.3 784,978 - -0.8 784,978 - -0.7 784,978 - -1.8 784,978 - -0.3 784,978 - -0.7 784,978 - -1.3 784,978 - -0.2 784,978 - +1.5 784,978 - -0.1 784,978 - +2.4 784,981 + +1.3 785,011 + +0.2 785,011 + +2.0 785,011 + +0.0 785,011 + -2.9 785,012 - +0.2 785,012 - -2.6 785,012 - +1.0 785,012 - +0.6 785,012 - +0.3 785,045 + +1.1 785,045 + -1.5 785,045 + +1.1 785,045 + +0.3 785,046 - +0.6 785,046 - -0.4 785,046 - +0.6 785,046 - -3.6 785,046 - +0.6 785,046 - -2.9 785,046 - -2.0 785,046 - +1.9 785,046 - +1.1 785,255 - -1.0 785,268 + -2.2 785,268 + +1.3 785,268 + -1.9 785,268 + +0.9 785,268 + -0.0 785,268 + -0.8 785,268 + -0.1 785,268 + +1.0 785,268 + -0.1 785,268 + +0.9 785,268 + +0.4 785,268 + +1.6 785,268 + +0.9 785,269 - +1.3 785,269 - -0.8 785,269 - -0.9 785,269 - +0.5 785,269 - +1.3 785,269 - +1.0 785,269 - +0.9 785,269 - +0.2 785,269 - +0.7 785,286 + -0.8 785,286 + -0.1 785,286 + -1.5 785,287 - -1.5 785,287 - -2.5 785,287 - +1.2 785,287 - -3.0 785,291 + +0.6 785,291 + +1.0 785,291 + +0.8 785,291 + -0.6 785,291 + +0.2 785,291 + -0.1 785,291 + -0.1 785,291 + -0.6 785,291 + +1.8 785,291 + -0.4 785,291 + -0.2 785,292 - +0.3 785,292 - +1.1 785,292 - +1.1 785,292 - +0.5 785,292 - +0.6 785,292 - -0.7 785,292 - +1.4 785,292 - +0.8 785,292 - +0.9 785,305 + +1.6 785,350 + +1.8 785,350 + +0.8 785,350 + +1.8 785,351 - +1.3 785,351 - +0.6 785,351 - -2.9 785,351 - +0.5 785,363 - +1.3 785,380 + +0.2 785,380 + +0.3 785,380 + +0.9 785,380 + +1.3 785,380 + +0.9 785,381 - +0.9 785,381 - +1.1 785,613 + LRK55_RS03715 0.19 +0.7 785,613 + LRK55_RS03715 0.19 +1.0 785,613 + LRK55_RS03715 0.19 -0.3 785,613 + LRK55_RS03715 0.19 +0.5 785,613 + LRK55_RS03715 0.19 +0.7 785,613 + LRK55_RS03715 0.19 +1.2 785,613 + LRK55_RS03715 0.19 -1.1 785,613 + LRK55_RS03715 0.19 +0.4 785,613 + LRK55_RS03715 0.19 +1.8 785,614 - LRK55_RS03715 0.19 +1.4 785,614 - LRK55_RS03715 0.19 +1.6 785,614 - LRK55_RS03715 0.19 +0.8 785,614 - LRK55_RS03715 0.19 -1.7 785,614 - LRK55_RS03715 0.19 +1.1 785,614 - LRK55_RS03715 0.19 +2.1 785,614 - LRK55_RS03715 0.19 +1.8 785,614 - LRK55_RS03715 0.19 +1.7 785,949 + LRK55_RS03715 0.38 +0.4 785,950 - LRK55_RS03715 0.38 +1.6 786,222 + LRK55_RS03715 0.54 +0.5 786,247 - LRK55_RS03715 0.55 -1.6 786,247 - LRK55_RS03715 0.55 +1.1 786,247 - LRK55_RS03715 0.55 +0.2 786,247 - LRK55_RS03715 0.55 +1.4 786,324 + LRK55_RS03715 0.60 +0.4 786,324 + LRK55_RS03715 0.60 +1.3 786,324 + LRK55_RS03715 0.60 +1.0 786,324 + LRK55_RS03715 0.60 +0.7 786,325 - LRK55_RS03715 0.60 +0.2 786,633 + LRK55_RS03715 0.78 +1.4 786,633 + LRK55_RS03715 0.78 +0.5 786,634 - LRK55_RS03715 0.78 +0.1 786,634 - LRK55_RS03715 0.78 +0.9 786,634 - LRK55_RS03715 0.78 +2.0 786,780 + LRK55_RS03715 0.86 -0.3 786,780 + LRK55_RS03715 0.86 -0.5 786,780 + LRK55_RS03715 0.86 +1.2 786,780 + LRK55_RS03715 0.86 -0.8 786,780 + LRK55_RS03715 0.86 +1.8 786,780 + LRK55_RS03715 0.86 +1.6 786,780 + LRK55_RS03715 0.86 +0.4 786,780 + LRK55_RS03715 0.86 +1.1 786,781 - LRK55_RS03715 0.86 +1.0 786,781 - LRK55_RS03715 0.86 +0.7 786,781 - LRK55_RS03715 0.86 +0.5 786,781 - LRK55_RS03715 0.86 +0.4 786,816 + LRK55_RS03715 0.88 +1.4 786,816 + LRK55_RS03715 0.88 +0.5 786,816 + LRK55_RS03715 0.88 +1.6 786,816 + LRK55_RS03715 0.88 +1.1 786,816 + LRK55_RS03715 0.88 -0.1 786,816 + LRK55_RS03715 0.88 +0.6 786,817 - LRK55_RS03715 0.88 +1.4 786,817 - LRK55_RS03715 0.88 -2.6 786,817 - LRK55_RS03715 0.88 -3.1 786,817 - LRK55_RS03715 0.88 -1.3 786,833 + LRK55_RS03715 0.89 -0.0 786,833 + LRK55_RS03715 0.89 +0.9 786,833 + LRK55_RS03715 0.89 -1.3 786,833 + LRK55_RS03715 0.89 +0.8 786,834 - LRK55_RS03715 0.89 +1.2 786,834 - LRK55_RS03715 0.89 +1.2 786,834 - LRK55_RS03715 0.89 +1.7 786,837 + LRK55_RS03715 0.90 +0.3 786,837 + LRK55_RS03715 0.90 +0.6 786,837 + LRK55_RS03715 0.90 +0.7 786,837 + LRK55_RS03715 0.90 -0.9 786,838 - LRK55_RS03715 0.90 +1.0 786,838 - LRK55_RS03715 0.90 +0.4 786,838 - LRK55_RS03715 0.90 +0.7 786,838 - LRK55_RS03715 0.90 -0.2 786,838 - LRK55_RS03715 0.90 +1.4 786,838 - LRK55_RS03715 0.90 +1.2 786,838 - LRK55_RS03715 0.90 +0.8 786,844 + +0.8 786,844 + +0.7 786,845 - +0.2 787,088 + -0.2 787,088 + -0.2 787,088 + +0.7 787,088 + +0.7 787,088 + -0.6 787,088 + -0.1 787,089 - +1.4 787,089 - +0.5 787,089 - +0.4 787,089 - -1.0 787,089 - -0.5 787,089 - -0.3 787,089 - -3.3 787,101 + +0.9 787,101 + +0.2 787,101 + -2.3 787,101 + +0.3 787,101 + +0.6 787,101 + -2.5 787,101 + -0.0 787,101 + -0.1 787,102 - +1.6 787,102 - +0.8 787,102 - +0.9 787,102 - +0.3 787,102 - +0.1 787,102 - -1.0 787,102 - +0.5 787,119 + +0.1 787,240 + +1.7 787,240 + -0.7 787,240 + +1.2 787,240 + +1.0 787,240 + +0.7 787,240 + +1.3 787,240 + +1.0 787,241 - -2.0 787,241 - +4.1 787,241 - +1.3 787,241 - +0.8 787,241 - +0.1 787,241 - -0.7 787,609 + LRK55_RS03720 0.35 +1.2 787,609 + LRK55_RS03720 0.35 -1.0 787,609 + LRK55_RS03720 0.35 +1.2 787,609 + LRK55_RS03720 0.35 +1.2 787,610 - LRK55_RS03720 0.35 -1.5 787,610 - LRK55_RS03720 0.35 -0.4 787,610 - LRK55_RS03720 0.35 +0.1 787,610 - LRK55_RS03720 0.35 +2.4 787,610 - LRK55_RS03720 0.35 +0.8 787,678 + LRK55_RS03720 0.41 +1.3 787,678 + LRK55_RS03720 0.41 -0.4 787,678 + LRK55_RS03720 0.41 +1.8 787,678 + LRK55_RS03720 0.41 -0.7 787,678 + LRK55_RS03720 0.41 +1.2 787,678 + LRK55_RS03720 0.41 +1.3 787,679 - LRK55_RS03720 0.41 +0.8 787,679 - LRK55_RS03720 0.41 +1.1 787,679 - LRK55_RS03720 0.41 +0.3 787,679 - LRK55_RS03720 0.41 +1.6 787,727 + LRK55_RS03720 0.45 +1.4 787,882 + LRK55_RS03720 0.57 +1.1 787,882 + LRK55_RS03720 0.57 -0.0 787,882 + LRK55_RS03720 0.57 +1.8 787,882 + LRK55_RS03720 0.57 +0.6 787,883 - LRK55_RS03720 0.57 -2.4
Or see this region's nucleotide sequence