Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS03445

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS03440 and LRK55_RS03445 are separated by 51 nucleotidesLRK55_RS03445 and LRK55_RS03450 are separated by 49 nucleotides LRK55_RS03440: LRK55_RS03440 - ribose-phosphate diphosphokinase, at 730,625 to 731,566 _RS03440 LRK55_RS03445: LRK55_RS03445 - tRNA-Gln, at 731,618 to 731,694 _RS03445 LRK55_RS03450: LRK55_RS03450 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 731,744 to 733,126 _RS03450 Position (kb) 731 732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 730.619 kb on - strandat 730.619 kb on - strandat 730.619 kb on - strandat 730.619 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.588 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.592 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.700 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strandat 731.708 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
730,619 - -1.5
730,619 - -0.2
730,619 - -0.5
730,619 - -0.0
731,588 - -1.9
731,588 - -2.7
731,588 - -1.5
731,588 - -1.9
731,588 - -0.3
731,588 - -0.1
731,588 - -1.9
731,588 - -1.9
731,588 - +0.3
731,588 - -2.6
731,588 - -0.9
731,588 - -2.9
731,588 - -3.6
731,588 - -1.3
731,588 - -1.3
731,588 - -2.4
731,592 - -2.9
731,592 - -2.0
731,592 - +0.8
731,592 - -0.8
731,592 - -3.5
731,592 - -0.4
731,592 - -1.7
731,592 - -2.9
731,700 - +1.0
731,700 - -1.3
731,700 - -0.9
731,700 - +0.5
731,700 - +0.1
731,700 - -0.0
731,700 - -1.2
731,700 - -0.1
731,700 - -0.2
731,700 - -1.1
731,700 - +1.0
731,700 - -0.7
731,700 - +0.1
731,700 - -1.7
731,700 - +0.2
731,700 - -0.5
731,700 - +2.1
731,700 - +1.6
731,700 - +0.7
731,700 - +0.8
731,700 - -0.3
731,700 - -0.7
731,700 - +0.4
731,700 - -0.6
731,700 - -2.3
731,700 - -2.2
731,700 - +0.5
731,700 - +1.6
731,700 - +1.5
731,700 - -0.5
731,700 - +0.9
731,700 - +0.2
731,700 - +0.6
731,700 - -0.3
731,700 - -0.2
731,700 - +0.3
731,708 - +0.1
731,708 - +0.4
731,708 - +0.7
731,708 - +0.6
731,708 - +1.1
731,708 - +1.5
731,708 - -2.1
731,708 - -1.3
731,708 - -0.1
731,708 - +0.9
731,708 - +0.3
731,708 - +0.8
731,708 - +0.6
731,708 - +0.8

Or see this region's nucleotide sequence