Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02610 and LRK55_RS02615 are separated by 32 nucleotides LRK55_RS02615 and LRK55_RS02620 are separated by 178 nucleotides LRK55_RS02620 and LRK55_RS02625 are separated by 84 nucleotides
LRK55_RS02610: LRK55_RS02610 - type II toxin-antitoxin system HicB family antitoxin, at 561,595 to 562,014
_RS02610
LRK55_RS02615: LRK55_RS02615 - type II toxin-antitoxin system HicA family toxin, at 562,047 to 562,223
_RS02615
LRK55_RS02620: LRK55_RS02620 - DUF502 domain-containing protein, at 562,402 to 563,064
_RS02620
LRK55_RS02625: LRK55_RS02625 - M14 family metallopeptidase, at 563,149 to 564,960
_RS02625
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 561.526 kb on + strand at 561.526 kb on + strand at 561.527 kb on - strand at 561.527 kb on - strand at 561.527 kb on - strand at 561.527 kb on - strand at 561.597 kb on - strand at 562.045 kb on - strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.216 kb on + strand at 562.217 kb on - strand at 562.217 kb on - strand at 562.217 kb on - strand at 562.217 kb on - strand at 562.217 kb on - strand at 562.255 kb on + strand at 562.255 kb on + strand at 562.255 kb on + strand at 562.256 kb on - strand at 562.256 kb on - strand at 562.256 kb on - strand at 562.367 kb on + strand at 562.367 kb on + strand at 562.368 kb on - strand at 562.368 kb on - strand at 562.368 kb on - strand at 562.368 kb on - strand at 562.368 kb on - strand at 562.427 kb on - strand at 562.427 kb on - strand at 562.427 kb on - strand at 562.566 kb on + strand, within LRK55_RS02620 at 562.567 kb on - strand, within LRK55_RS02620 at 562.604 kb on + strand, within LRK55_RS02620 at 562.605 kb on - strand, within LRK55_RS02620 at 562.636 kb on + strand, within LRK55_RS02620 at 562.637 kb on - strand, within LRK55_RS02620 at 562.637 kb on - strand, within LRK55_RS02620 at 562.732 kb on + strand, within LRK55_RS02620 at 562.732 kb on + strand, within LRK55_RS02620 at 562.733 kb on - strand, within LRK55_RS02620 at 562.733 kb on - strand, within LRK55_RS02620 at 562.733 kb on - strand, within LRK55_RS02620 at 562.924 kb on + strand, within LRK55_RS02620 at 562.925 kb on - strand, within LRK55_RS02620 at 563.257 kb on + strand at 563.275 kb on + strand at 563.276 kb on - strand at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.548 kb on + strand, within LRK55_RS02625 at 563.549 kb on - strand, within LRK55_RS02625 at 563.549 kb on - strand, within LRK55_RS02625 at 563.549 kb on - strand, within LRK55_RS02625 at 563.549 kb on - strand, within LRK55_RS02625 at 563.550 kb on + strand, within LRK55_RS02625 at 563.593 kb on + strand, within LRK55_RS02625 at 563.650 kb on + strand, within LRK55_RS02625 at 563.650 kb on + strand, within LRK55_RS02625 at 563.650 kb on + strand, within LRK55_RS02625 at 563.651 kb on - strand, within LRK55_RS02625 at 563.651 kb on - strand, within LRK55_RS02625 at 563.672 kb on - strand, within LRK55_RS02625 at 563.773 kb on + strand, within LRK55_RS02625 at 563.773 kb on + strand, within LRK55_RS02625 at 563.779 kb on + strand, within LRK55_RS02625 at 563.779 kb on + strand, within LRK55_RS02625 at 563.779 kb on + strand, within LRK55_RS02625 at 563.780 kb on - strand, within LRK55_RS02625 at 563.794 kb on + strand, within LRK55_RS02625 at 563.794 kb on + strand, within LRK55_RS02625 at 563.794 kb on + strand, within LRK55_RS02625 at 563.794 kb on + strand, within LRK55_RS02625 at 563.794 kb on + strand, within LRK55_RS02625 at 563.795 kb on - strand, within LRK55_RS02625 at 563.876 kb on - strand, within LRK55_RS02625 at 563.876 kb on - strand, within LRK55_RS02625 at 563.905 kb on + strand, within LRK55_RS02625 at 563.905 kb on + strand, within LRK55_RS02625 at 564.064 kb on + strand, within LRK55_RS02625 at 564.064 kb on + strand, within LRK55_RS02625 at 564.064 kb on + strand, within LRK55_RS02625 at 564.064 kb on + strand, within LRK55_RS02625 at 564.064 kb on + strand, within LRK55_RS02625
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 561,526 + -0.1 561,526 + -0.0 561,527 - -1.1 561,527 - +0.4 561,527 - -0.1 561,527 - -1.8 561,597 - -0.3 562,045 - +0.1 562,216 + -2.0 562,216 + +1.2 562,216 + -0.3 562,216 + -2.0 562,216 + -1.0 562,216 + +0.8 562,216 + +0.4 562,217 - -0.3 562,217 - +0.9 562,217 - +0.6 562,217 - +0.0 562,217 - +0.6 562,255 + -1.3 562,255 + +1.6 562,255 + +0.0 562,256 - +0.1 562,256 - -3.3 562,256 - -0.7 562,367 + -1.6 562,367 + +0.4 562,368 - -0.3 562,368 - +1.4 562,368 - +1.4 562,368 - -2.0 562,368 - +0.5 562,427 - -0.6 562,427 - -1.5 562,427 - +0.1 562,566 + LRK55_RS02620 0.25 +0.8 562,567 - LRK55_RS02620 0.25 -1.2 562,604 + LRK55_RS02620 0.30 -1.0 562,605 - LRK55_RS02620 0.31 +0.6 562,636 + LRK55_RS02620 0.35 -1.7 562,637 - LRK55_RS02620 0.35 -2.5 562,637 - LRK55_RS02620 0.35 -0.4 562,732 + LRK55_RS02620 0.50 -0.6 562,732 + LRK55_RS02620 0.50 +3.0 562,733 - LRK55_RS02620 0.50 -0.2 562,733 - LRK55_RS02620 0.50 -0.3 562,733 - LRK55_RS02620 0.50 +0.1 562,924 + LRK55_RS02620 0.79 -0.2 562,925 - LRK55_RS02620 0.79 +0.1 563,257 + -0.1 563,275 + +0.1 563,276 - -1.5 563,548 + LRK55_RS02625 0.22 -0.7 563,548 + LRK55_RS02625 0.22 -0.2 563,548 + LRK55_RS02625 0.22 +0.8 563,548 + LRK55_RS02625 0.22 +2.0 563,548 + LRK55_RS02625 0.22 +1.9 563,548 + LRK55_RS02625 0.22 +0.7 563,548 + LRK55_RS02625 0.22 -2.3 563,549 - LRK55_RS02625 0.22 +0.2 563,549 - LRK55_RS02625 0.22 +0.5 563,549 - LRK55_RS02625 0.22 +1.2 563,549 - LRK55_RS02625 0.22 +0.6 563,550 + LRK55_RS02625 0.22 +0.4 563,593 + LRK55_RS02625 0.25 +1.6 563,650 + LRK55_RS02625 0.28 -0.8 563,650 + LRK55_RS02625 0.28 +1.5 563,650 + LRK55_RS02625 0.28 -0.3 563,651 - LRK55_RS02625 0.28 -0.2 563,651 - LRK55_RS02625 0.28 +0.3 563,672 - LRK55_RS02625 0.29 +2.5 563,773 + LRK55_RS02625 0.34 +0.6 563,773 + LRK55_RS02625 0.34 +0.7 563,779 + LRK55_RS02625 0.35 -3.0 563,779 + LRK55_RS02625 0.35 -2.7 563,779 + LRK55_RS02625 0.35 -0.3 563,780 - LRK55_RS02625 0.35 -0.7 563,794 + LRK55_RS02625 0.36 -0.4 563,794 + LRK55_RS02625 0.36 -0.5 563,794 + LRK55_RS02625 0.36 -0.4 563,794 + LRK55_RS02625 0.36 -0.4 563,794 + LRK55_RS02625 0.36 +0.0 563,795 - LRK55_RS02625 0.36 +1.2 563,876 - LRK55_RS02625 0.40 -0.7 563,876 - LRK55_RS02625 0.40 +0.3 563,905 + LRK55_RS02625 0.42 -1.3 563,905 + LRK55_RS02625 0.42 -0.5 564,064 + LRK55_RS02625 0.50 +0.9 564,064 + LRK55_RS02625 0.50 +0.1 564,064 + LRK55_RS02625 0.50 -1.3 564,064 + LRK55_RS02625 0.50 +0.6 564,064 + LRK55_RS02625 0.50 +0.6
Or see this region's nucleotide sequence