Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01195

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01185 and LRK55_RS01190 are separated by 77 nucleotidesLRK55_RS01190 and LRK55_RS01195 are separated by 12 nucleotidesLRK55_RS01195 and LRK55_RS01200 are separated by 61 nucleotides LRK55_RS01185: LRK55_RS01185 - helix-turn-helix domain-containing protein, at 257,716 to 258,531 _RS01185 LRK55_RS01190: LRK55_RS01190 - VOC family protein, at 258,609 to 259,031 _RS01190 LRK55_RS01195: LRK55_RS01195 - alpha/beta hydrolase-fold protein, at 259,044 to 260,678 _RS01195 LRK55_RS01200: LRK55_RS01200 - serine hydrolase, at 260,740 to 262,419 _RS01200 Position (kb) 259 260 261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 258.206 kb on + strand, within LRK55_RS01185at 258.206 kb on + strand, within LRK55_RS01185at 258.206 kb on + strand, within LRK55_RS01185at 258.206 kb on + strand, within LRK55_RS01185at 258.207 kb on - strand, within LRK55_RS01185at 258.207 kb on - strand, within LRK55_RS01185at 258.207 kb on - strand, within LRK55_RS01185at 258.236 kb on + strand, within LRK55_RS01185at 258.236 kb on + strand, within LRK55_RS01185at 258.237 kb on - strand, within LRK55_RS01185at 258.421 kb on + strand, within LRK55_RS01185at 258.505 kb on + strandat 258.506 kb on - strandat 258.506 kb on - strandat 258.506 kb on - strandat 258.506 kb on - strandat 258.506 kb on - strandat 258.547 kb on + strandat 258.547 kb on + strandat 258.548 kb on - strandat 258.717 kb on + strand, within LRK55_RS01190at 258.892 kb on - strand, within LRK55_RS01190at 258.933 kb on + strand, within LRK55_RS01190at 258.934 kb on - strand, within LRK55_RS01190at 258.934 kb on - strand, within LRK55_RS01190at 258.934 kb on - strand, within LRK55_RS01190at 258.934 kb on - strand, within LRK55_RS01190at 258.934 kb on - strand, within LRK55_RS01190at 258.996 kb on + strandat 258.996 kb on + strandat 258.997 kb on - strandat 258.997 kb on - strandat 258.997 kb on - strandat 259.008 kb on + strandat 259.008 kb on + strandat 259.045 kb on + strandat 259.046 kb on - strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.099 kb on + strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.100 kb on - strandat 259.153 kb on + strandat 259.252 kb on + strand, within LRK55_RS01195at 259.252 kb on + strand, within LRK55_RS01195at 259.252 kb on + strand, within LRK55_RS01195at 259.252 kb on + strand, within LRK55_RS01195at 259.252 kb on + strand, within LRK55_RS01195at 259.253 kb on - strand, within LRK55_RS01195at 259.253 kb on - strand, within LRK55_RS01195at 259.253 kb on - strand, within LRK55_RS01195at 259.348 kb on + strand, within LRK55_RS01195at 259.348 kb on + strand, within LRK55_RS01195at 259.348 kb on + strand, within LRK55_RS01195at 259.349 kb on - strand, within LRK55_RS01195at 259.349 kb on - strand, within LRK55_RS01195at 259.349 kb on - strand, within LRK55_RS01195at 259.478 kb on - strand, within LRK55_RS01195at 259.579 kb on + strand, within LRK55_RS01195at 259.579 kb on + strand, within LRK55_RS01195at 259.580 kb on - strand, within LRK55_RS01195at 259.600 kb on + strand, within LRK55_RS01195at 259.600 kb on + strand, within LRK55_RS01195at 259.600 kb on + strand, within LRK55_RS01195at 259.600 kb on + strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.601 kb on - strand, within LRK55_RS01195at 259.918 kb on + strand, within LRK55_RS01195at 259.918 kb on + strand, within LRK55_RS01195at 259.919 kb on - strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.978 kb on + strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 259.979 kb on - strand, within LRK55_RS01195at 260.152 kb on + strand, within LRK55_RS01195at 260.281 kb on + strand, within LRK55_RS01195at 260.281 kb on + strand, within LRK55_RS01195at 260.281 kb on + strand, within LRK55_RS01195at 260.282 kb on - strand, within LRK55_RS01195at 260.287 kb on + strand, within LRK55_RS01195at 260.287 kb on + strand, within LRK55_RS01195at 260.288 kb on - strand, within LRK55_RS01195at 260.288 kb on - strand, within LRK55_RS01195at 260.288 kb on - strand, within LRK55_RS01195at 260.288 kb on - strand, within LRK55_RS01195at 260.323 kb on + strand, within LRK55_RS01195at 260.323 kb on + strand, within LRK55_RS01195at 260.324 kb on - strand, within LRK55_RS01195at 260.324 kb on - strand, within LRK55_RS01195at 260.558 kb on + strandat 260.559 kb on - strandat 260.559 kb on - strandat 260.655 kb on + strandat 260.656 kb on - strandat 260.692 kb on + strandat 261.026 kb on + strand, within LRK55_RS01200at 261.027 kb on - strand, within LRK55_RS01200at 261.053 kb on + strand, within LRK55_RS01200at 261.198 kb on - strand, within LRK55_RS01200at 261.198 kb on - strand, within LRK55_RS01200at 261.215 kb on + strand, within LRK55_RS01200at 261.216 kb on - strand, within LRK55_RS01200at 261.216 kb on - strand, within LRK55_RS01200at 261.354 kb on - strand, within LRK55_RS01200at 261.354 kb on - strand, within LRK55_RS01200at 261.581 kb on + strand, within LRK55_RS01200at 261.582 kb on - strand, within LRK55_RS01200at 261.582 kb on - strand, within LRK55_RS01200at 261.582 kb on - strand, within LRK55_RS01200at 261.582 kb on - strand, within LRK55_RS01200

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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258,206 + LRK55_RS01185 0.60 +0.3
258,206 + LRK55_RS01185 0.60 -0.7
258,206 + LRK55_RS01185 0.60 +0.6
258,206 + LRK55_RS01185 0.60 +1.1
258,207 - LRK55_RS01185 0.60 +0.2
258,207 - LRK55_RS01185 0.60 -3.8
258,207 - LRK55_RS01185 0.60 +1.2
258,236 + LRK55_RS01185 0.64 +0.5
258,236 + LRK55_RS01185 0.64 -1.8
258,237 - LRK55_RS01185 0.64 +0.2
258,421 + LRK55_RS01185 0.86 +0.1
258,505 + +0.8
258,506 - +0.3
258,506 - -2.5
258,506 - +0.0
258,506 - +0.6
258,506 - +0.2
258,547 + -0.1
258,547 + -0.6
258,548 - -2.9
258,717 + LRK55_RS01190 0.26 +1.1
258,892 - LRK55_RS01190 0.67 +1.4
258,933 + LRK55_RS01190 0.77 -0.1
258,934 - LRK55_RS01190 0.77 -1.5
258,934 - LRK55_RS01190 0.77 +0.4
258,934 - LRK55_RS01190 0.77 -1.0
258,934 - LRK55_RS01190 0.77 +0.9
258,934 - LRK55_RS01190 0.77 +1.1
258,996 + -0.7
258,996 + +1.2
258,997 - -2.7
258,997 - +2.2
258,997 - +0.1
259,008 + +0.9
259,008 + -1.8
259,045 + +1.4
259,046 - +1.7
259,099 + +0.3
259,099 + +0.1
259,099 + -0.3
259,099 + -0.1
259,099 + +1.0
259,099 + -1.7
259,099 + +1.1
259,099 + -0.2
259,099 + -0.1
259,099 + +0.0
259,099 + +1.2
259,099 + -0.3
259,099 + +0.3
259,099 + +0.1
259,099 + -2.1
259,099 + +0.5
259,100 - -2.0
259,100 - +1.7
259,100 - +0.8
259,100 - +1.1
259,100 - +0.3
259,100 - +0.6
259,100 - +1.0
259,100 - -0.1
259,100 - -1.7
259,100 - -3.3
259,100 - -0.2
259,100 - -0.5
259,100 - -0.9
259,153 + -1.8
259,252 + LRK55_RS01195 0.13 -2.6
259,252 + LRK55_RS01195 0.13 -2.4
259,252 + LRK55_RS01195 0.13 +0.7
259,252 + LRK55_RS01195 0.13 +0.8
259,252 + LRK55_RS01195 0.13 +0.1
259,253 - LRK55_RS01195 0.13 -2.0
259,253 - LRK55_RS01195 0.13 +1.0
259,253 - LRK55_RS01195 0.13 -1.2
259,348 + LRK55_RS01195 0.19 -1.2
259,348 + LRK55_RS01195 0.19 +1.2
259,348 + LRK55_RS01195 0.19 +1.0
259,349 - LRK55_RS01195 0.19 +0.6
259,349 - LRK55_RS01195 0.19 -1.1
259,349 - LRK55_RS01195 0.19 +0.2
259,478 - LRK55_RS01195 0.27 +1.7
259,579 + LRK55_RS01195 0.33 +0.1
259,579 + LRK55_RS01195 0.33 -1.0
259,580 - LRK55_RS01195 0.33 -3.1
259,600 + LRK55_RS01195 0.34 +0.2
259,600 + LRK55_RS01195 0.34 +0.7
259,600 + LRK55_RS01195 0.34 -0.5
259,600 + LRK55_RS01195 0.34 +1.1
259,601 - LRK55_RS01195 0.34 -0.1
259,601 - LRK55_RS01195 0.34 -0.2
259,601 - LRK55_RS01195 0.34 +0.9
259,601 - LRK55_RS01195 0.34 -2.2
259,601 - LRK55_RS01195 0.34 +2.5
259,601 - LRK55_RS01195 0.34 -0.1
259,918 + LRK55_RS01195 0.53 +0.6
259,918 + LRK55_RS01195 0.53 +0.3
259,919 - LRK55_RS01195 0.54 +0.7
259,978 + LRK55_RS01195 0.57 +2.7
259,978 + LRK55_RS01195 0.57 -2.0
259,978 + LRK55_RS01195 0.57 +0.1
259,978 + LRK55_RS01195 0.57 -1.5
259,978 + LRK55_RS01195 0.57 +1.0
259,978 + LRK55_RS01195 0.57 -1.0
259,978 + LRK55_RS01195 0.57 -0.7
259,978 + LRK55_RS01195 0.57 +0.9
259,978 + LRK55_RS01195 0.57 +2.1
259,979 - LRK55_RS01195 0.57 +0.8
259,979 - LRK55_RS01195 0.57 +1.0
259,979 - LRK55_RS01195 0.57 +1.2
259,979 - LRK55_RS01195 0.57 +0.8
259,979 - LRK55_RS01195 0.57 -0.7
259,979 - LRK55_RS01195 0.57 +0.7
259,979 - LRK55_RS01195 0.57 +0.5
259,979 - LRK55_RS01195 0.57 +1.3
260,152 + LRK55_RS01195 0.68 +0.9
260,281 + LRK55_RS01195 0.76 -0.4
260,281 + LRK55_RS01195 0.76 +1.2
260,281 + LRK55_RS01195 0.76 -1.2
260,282 - LRK55_RS01195 0.76 -0.4
260,287 + LRK55_RS01195 0.76 -0.6
260,287 + LRK55_RS01195 0.76 -0.2
260,288 - LRK55_RS01195 0.76 -0.2
260,288 - LRK55_RS01195 0.76 +1.1
260,288 - LRK55_RS01195 0.76 -0.0
260,288 - LRK55_RS01195 0.76 +0.6
260,323 + LRK55_RS01195 0.78 +0.4
260,323 + LRK55_RS01195 0.78 -1.4
260,324 - LRK55_RS01195 0.78 -0.7
260,324 - LRK55_RS01195 0.78 +1.3
260,558 + -0.5
260,559 - +0.0
260,559 - -1.8
260,655 + -1.5
260,656 - +0.6
260,692 + +0.7
261,026 + LRK55_RS01200 0.17 +0.5
261,027 - LRK55_RS01200 0.17 -1.8
261,053 + LRK55_RS01200 0.19 -3.0
261,198 - LRK55_RS01200 0.27 -1.4
261,198 - LRK55_RS01200 0.27 +0.1
261,215 + LRK55_RS01200 0.28 -1.3
261,216 - LRK55_RS01200 0.28 -0.3
261,216 - LRK55_RS01200 0.28 -1.7
261,354 - LRK55_RS01200 0.37 -1.8
261,354 - LRK55_RS01200 0.37 -0.1
261,581 + LRK55_RS01200 0.50 -1.2
261,582 - LRK55_RS01200 0.50 -0.4
261,582 - LRK55_RS01200 0.50 +0.3
261,582 - LRK55_RS01200 0.50 +0.2
261,582 - LRK55_RS01200 0.50 -1.8

Or see this region's nucleotide sequence