Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00975 and LRK55_RS00980 are separated by 83 nucleotides LRK55_RS00980 and LRK55_RS00985 are separated by 172 nucleotides LRK55_RS00985 and LRK55_RS00990 overlap by 4 nucleotides LRK55_RS00990 and LRK55_RS00995 are separated by 52 nucleotides
LRK55_RS00975: LRK55_RS00975 - 50S ribosomal protein L32, at 216,645 to 216,839
_RS00975
LRK55_RS00980: LRK55_RS00980 - YceD family protein, at 216,923 to 217,396
_RS00980
LRK55_RS00985: LRK55_RS00985 - hypothetical protein, at 217,569 to 218,024
_RS00985
LRK55_RS00990: LRK55_RS00990 - Maf family protein, at 218,021 to 218,617
_RS00990
LRK55_RS00995: LRK55_RS00995 - AAA family ATPase, at 218,670 to 219,611
_RS00995
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 217.436 kb on - strand at 217.436 kb on - strand at 217.436 kb on - strand at 217.450 kb on - strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.643 kb on - strand, within LRK55_RS00985 at 218.217 kb on - strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990 at 218.450 kb on + strand, within LRK55_RS00990 at 218.627 kb on + strand at 218.627 kb on + strand at 218.627 kb on + strand at 218.627 kb on + strand at 218.627 kb on + strand at 218.628 kb on - strand at 218.628 kb on - strand at 218.628 kb on - strand at 218.628 kb on - strand at 218.628 kb on - strand at 218.628 kb on - strand at 218.943 kb on + strand, within LRK55_RS00995 at 218.943 kb on + strand, within LRK55_RS00995 at 218.943 kb on + strand, within LRK55_RS00995 at 218.943 kb on + strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995 at 218.944 kb on - strand, within LRK55_RS00995
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 216,925 - +0.6 216,925 - +1.6 216,925 - +1.0 216,925 - +0.1 216,925 - -1.0 216,925 - +0.1 216,925 - -3.7 217,436 - -0.0 217,436 - -1.6 217,436 - +0.8 217,450 - -0.1 217,578 + +0.3 217,578 + -1.4 217,578 + +1.4 217,578 + +0.2 217,578 + -1.3 217,579 - -0.5 217,579 - -0.8 217,579 - -0.2 217,579 - -0.1 217,579 - -1.8 217,579 - -0.1 217,579 - +0.9 217,579 - +0.8 217,600 + +1.7 217,600 + -0.7 217,600 + -2.1 217,600 + -1.8 217,601 - +0.3 217,601 - -0.1 217,601 - +0.9 217,601 - -0.6 217,642 + LRK55_RS00985 0.16 +1.9 217,642 + LRK55_RS00985 0.16 -1.4 217,642 + LRK55_RS00985 0.16 +2.1 217,642 + LRK55_RS00985 0.16 +1.0 217,643 - LRK55_RS00985 0.16 +0.3 218,217 - LRK55_RS00990 0.33 -2.0 218,337 + LRK55_RS00990 0.53 +0.9 218,337 + LRK55_RS00990 0.53 +2.5 218,337 + LRK55_RS00990 0.53 +1.3 218,337 + LRK55_RS00990 0.53 +0.3 218,337 + LRK55_RS00990 0.53 +0.2 218,337 + LRK55_RS00990 0.53 -0.6 218,337 + LRK55_RS00990 0.53 -0.7 218,337 + LRK55_RS00990 0.53 +0.5 218,337 + LRK55_RS00990 0.53 -0.2 218,338 - LRK55_RS00990 0.53 -0.2 218,338 - LRK55_RS00990 0.53 +0.3 218,338 - LRK55_RS00990 0.53 +0.4 218,450 + LRK55_RS00990 0.72 +1.4 218,627 + -0.4 218,627 + -0.5 218,627 + -2.0 218,627 + +0.2 218,627 + +0.5 218,628 - +0.5 218,628 - +0.0 218,628 - -0.9 218,628 - -1.0 218,628 - -1.2 218,628 - -1.8 218,943 + LRK55_RS00995 0.29 +1.2 218,943 + LRK55_RS00995 0.29 -1.8 218,943 + LRK55_RS00995 0.29 +0.2 218,943 + LRK55_RS00995 0.29 +0.1 218,944 - LRK55_RS00995 0.29 -2.2 218,944 - LRK55_RS00995 0.29 +0.6 218,944 - LRK55_RS00995 0.29 -2.2 218,944 - LRK55_RS00995 0.29 +1.7 218,944 - LRK55_RS00995 0.29 +1.4 218,944 - LRK55_RS00995 0.29 +1.8
Or see this region's nucleotide sequence