Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00970 and LRK55_RS00975 are separated by 161 nucleotides LRK55_RS00975 and LRK55_RS00980 are separated by 83 nucleotides LRK55_RS00980 and LRK55_RS00985 are separated by 172 nucleotides LRK55_RS00985 and LRK55_RS00990 overlap by 4 nucleotides
LRK55_RS00970: LRK55_RS00970 - beta-ketoacyl-ACP synthase III, at 215,509 to 216,483
_RS00970
LRK55_RS00975: LRK55_RS00975 - 50S ribosomal protein L32, at 216,645 to 216,839
_RS00975
LRK55_RS00980: LRK55_RS00980 - YceD family protein, at 216,923 to 217,396
_RS00980
LRK55_RS00985: LRK55_RS00985 - hypothetical protein, at 217,569 to 218,024
_RS00985
LRK55_RS00990: LRK55_RS00990 - Maf family protein, at 218,021 to 218,617
_RS00990
Position (kb) 216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 216.502 kb on - strand at 216.502 kb on - strand at 216.502 kb on - strand at 216.502 kb on - strand at 216.502 kb on - strand at 216.502 kb on - strand at 216.502 kb on - strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.555 kb on + strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.556 kb on - strand at 216.563 kb on + strand at 216.563 kb on + strand at 216.563 kb on + strand at 216.563 kb on + strand at 216.563 kb on + strand at 216.564 kb on - strand at 216.564 kb on - strand at 216.564 kb on - strand at 216.564 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 216.925 kb on - strand at 217.436 kb on - strand at 217.436 kb on - strand at 217.436 kb on - strand at 217.450 kb on - strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.578 kb on + strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.579 kb on - strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.600 kb on + strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.601 kb on - strand at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.642 kb on + strand, within LRK55_RS00985 at 217.643 kb on - strand, within LRK55_RS00985 at 218.217 kb on - strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.337 kb on + strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990 at 218.338 kb on - strand, within LRK55_RS00990
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 216,502 - -0.4 216,502 - +1.0 216,502 - +1.0 216,502 - -0.1 216,502 - +0.5 216,502 - -0.0 216,502 - +1.2 216,555 + -0.8 216,555 + -0.5 216,555 + -2.7 216,555 + -2.3 216,555 + -0.3 216,555 + +0.8 216,555 + +1.1 216,555 + -2.1 216,555 + +0.6 216,555 + -0.8 216,555 + +2.5 216,555 + +0.1 216,555 + -1.6 216,555 + +1.3 216,555 + +1.7 216,555 + +0.4 216,555 + +0.4 216,555 + -1.1 216,555 + -1.6 216,555 + -0.2 216,555 + +0.0 216,556 - +0.4 216,556 - +0.8 216,556 - +0.3 216,556 - -0.8 216,556 - -1.4 216,556 - -0.2 216,556 - -1.3 216,556 - +2.0 216,556 - -1.6 216,556 - -0.5 216,556 - +0.9 216,556 - +0.2 216,556 - -0.3 216,556 - +0.1 216,556 - +1.0 216,556 - -2.1 216,556 - +0.1 216,556 - +0.3 216,556 - -1.6 216,556 - +0.3 216,556 - -2.2 216,556 - -1.2 216,563 + +0.5 216,563 + +1.4 216,563 + +0.0 216,563 + -2.7 216,563 + -1.6 216,564 - +1.4 216,564 - -0.4 216,564 - -0.3 216,564 - +0.5 216,925 - +0.6 216,925 - +1.6 216,925 - +1.0 216,925 - +0.1 216,925 - -1.0 216,925 - +0.1 216,925 - -3.7 217,436 - -0.0 217,436 - -1.6 217,436 - +0.8 217,450 - -0.1 217,578 + +0.3 217,578 + -1.4 217,578 + +1.4 217,578 + +0.2 217,578 + -1.3 217,579 - -0.5 217,579 - -0.8 217,579 - -0.2 217,579 - -0.1 217,579 - -1.8 217,579 - -0.1 217,579 - +0.9 217,579 - +0.8 217,600 + +1.7 217,600 + -0.7 217,600 + -2.1 217,600 + -1.8 217,601 - +0.3 217,601 - -0.1 217,601 - +0.9 217,601 - -0.6 217,642 + LRK55_RS00985 0.16 +1.9 217,642 + LRK55_RS00985 0.16 -1.4 217,642 + LRK55_RS00985 0.16 +2.1 217,642 + LRK55_RS00985 0.16 +1.0 217,643 - LRK55_RS00985 0.16 +0.3 218,217 - LRK55_RS00990 0.33 -2.0 218,337 + LRK55_RS00990 0.53 +0.9 218,337 + LRK55_RS00990 0.53 +2.5 218,337 + LRK55_RS00990 0.53 +1.3 218,337 + LRK55_RS00990 0.53 +0.3 218,337 + LRK55_RS00990 0.53 +0.2 218,337 + LRK55_RS00990 0.53 -0.6 218,337 + LRK55_RS00990 0.53 -0.7 218,337 + LRK55_RS00990 0.53 +0.5 218,337 + LRK55_RS00990 0.53 -0.2 218,338 - LRK55_RS00990 0.53 -0.2 218,338 - LRK55_RS00990 0.53 +0.3 218,338 - LRK55_RS00990 0.53 +0.4
Or see this region's nucleotide sequence