Experiment: L-Valine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0834c and Rv0835 are separated by 467 nucleotides Rv0835 and Rv0836c are separated by 681 nucleotides
Rv0834c: Rv0834c - PE-PGRS family protein PE_PGRS14, at 927,837 to 930,485
Rv0834c
Rv0835: Rv0835 - Possible lipoprotein LpqQ, at 930,953 to 931,597
Rv0835
Rv0836c: Rv0836c - Hypothetical protein, at 932,279 to 932,932
Rv0836c
Position (kb) 930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 930.123 kb on - strand, within Rv0834c at 930.123 kb on - strand, within Rv0834c at 930.169 kb on - strand, within Rv0834c at 930.236 kb on + strand at 930.301 kb on + strand at 930.301 kb on + strand at 930.537 kb on + strand at 930.538 kb on - strand at 930.545 kb on + strand at 930.545 kb on + strand at 930.545 kb on + strand at 930.547 kb on + strand at 930.547 kb on + strand at 930.548 kb on - strand at 930.548 kb on - strand at 930.548 kb on - strand at 930.548 kb on - strand at 930.554 kb on + strand at 930.707 kb on + strand at 930.708 kb on - strand at 930.736 kb on + strand at 930.755 kb on - strand at 930.780 kb on + strand at 931.105 kb on - strand, within Rv0835 at 931.105 kb on - strand, within Rv0835 at 931.121 kb on + strand, within Rv0835 at 931.122 kb on - strand, within Rv0835 at 931.252 kb on + strand, within Rv0835 at 931.337 kb on + strand, within Rv0835 at 931.419 kb on - strand, within Rv0835 at 931.490 kb on + strand, within Rv0835 at 931.490 kb on + strand, within Rv0835 at 931.490 kb on + strand, within Rv0835 at 931.491 kb on - strand, within Rv0835 at 931.491 kb on - strand, within Rv0835 at 931.509 kb on + strand, within Rv0835 at 931.509 kb on + strand, within Rv0835 at 931.515 kb on + strand, within Rv0835 at 931.516 kb on - strand, within Rv0835 at 931.534 kb on + strand at 931.595 kb on + strand at 931.596 kb on - strand at 931.738 kb on + strand at 931.739 kb on - strand at 931.752 kb on + strand at 931.752 kb on + strand at 931.752 kb on + strand at 931.753 kb on - strand at 931.753 kb on - strand at 931.753 kb on - strand at 931.753 kb on - strand at 931.824 kb on + strand at 931.825 kb on - strand at 931.825 kb on - strand at 932.052 kb on + strand at 932.073 kb on + strand at 932.140 kb on + strand at 932.164 kb on + strand at 932.165 kb on - strand at 932.186 kb on + strand at 932.187 kb on - strand at 932.187 kb on - strand at 932.211 kb on + strand at 932.212 kb on - strand at 932.420 kb on + strand, within Rv0836c at 932.420 kb on + strand, within Rv0836c at 932.420 kb on + strand, within Rv0836c at 932.490 kb on + strand, within Rv0836c at 932.529 kb on + strand, within Rv0836c at 932.529 kb on + strand, within Rv0836c at 932.530 kb on - strand, within Rv0836c at 932.580 kb on + strand, within Rv0836c at 932.580 kb on + strand, within Rv0836c at 932.581 kb on - strand, within Rv0836c at 932.581 kb on - strand, within Rv0836c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine 10 mM (N) remove 930,123 - Rv0834c 0.86 -0.9 930,123 - Rv0834c 0.86 -2.1 930,169 - Rv0834c 0.88 +0.2 930,236 + -1.2 930,301 + +0.2 930,301 + -1.2 930,537 + -0.1 930,538 - +0.2 930,545 + -0.1 930,545 + -0.2 930,545 + +2.1 930,547 + -0.4 930,547 + +0.0 930,548 - -0.2 930,548 - +0.2 930,548 - -1.0 930,548 - -0.3 930,554 + -0.3 930,707 + -0.3 930,708 - +1.0 930,736 + -0.9 930,755 - -1.3 930,780 + +2.8 931,105 - Rv0835 0.24 -0.0 931,105 - Rv0835 0.24 -1.9 931,121 + Rv0835 0.26 -0.4 931,122 - Rv0835 0.26 -0.2 931,252 + Rv0835 0.46 +0.2 931,337 + Rv0835 0.60 -0.5 931,419 - Rv0835 0.72 +0.5 931,490 + Rv0835 0.83 -0.1 931,490 + Rv0835 0.83 -1.0 931,490 + Rv0835 0.83 -1.3 931,491 - Rv0835 0.83 +0.1 931,491 - Rv0835 0.83 -0.4 931,509 + Rv0835 0.86 -0.7 931,509 + Rv0835 0.86 -0.5 931,515 + Rv0835 0.87 -0.7 931,516 - Rv0835 0.87 -0.8 931,534 + +0.5 931,595 + -0.4 931,596 - -0.6 931,738 + -0.2 931,739 - -1.6 931,752 + -0.1 931,752 + +1.1 931,752 + -0.4 931,753 - +0.0 931,753 - -0.6 931,753 - -0.5 931,753 - +0.1 931,824 + -0.4 931,825 - +0.1 931,825 - +0.3 932,052 + +1.3 932,073 + -0.6 932,140 + +0.2 932,164 + -0.5 932,165 - +0.4 932,186 + -0.6 932,187 - +0.1 932,187 - +0.2 932,211 + -0.5 932,212 - -0.8 932,420 + Rv0836c 0.22 +0.7 932,420 + Rv0836c 0.22 +0.8 932,420 + Rv0836c 0.22 +5.6 932,490 + Rv0836c 0.32 +0.2 932,529 + Rv0836c 0.38 +2.8 932,529 + Rv0836c 0.38 -0.1 932,530 - Rv0836c 0.38 +0.1 932,580 + Rv0836c 0.46 +1.2 932,580 + Rv0836c 0.46 +0.2 932,581 - Rv0836c 0.46 +0.6 932,581 - Rv0836c 0.46 -0.2
Or see this region's nucleotide sequence