Experiment: L-Valine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0231 and Rv0232 are separated by 134 nucleotides Rv0232 and Rv0233 overlap by 4 nucleotides
Rv0231: Rv0231 - Probable acyl-CoA dehydrogenase FadE4, at 276,058 to 277,764
Rv0231
Rv0232: Rv0232 - Probable transcriptional regulatory protein (probably TetR/AcrR-family), at 277,899 to 278,588
Rv0232
Rv0233: Rv0233 - Ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain), at 278,585 to 279,529
Rv0233
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.940 kb on + strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.988 kb on + strand, within Rv0231 at 276.989 kb on - strand, within Rv0231 at 277.202 kb on + strand, within Rv0231 at 277.225 kb on + strand, within Rv0231 at 277.226 kb on - strand, within Rv0231 at 277.226 kb on - strand, within Rv0231 at 277.510 kb on + strand, within Rv0231 at 277.748 kb on - strand at 277.762 kb on + strand at 277.763 kb on - strand at 277.763 kb on - strand at 278.011 kb on + strand, within Rv0232 at 278.052 kb on + strand, within Rv0232 at 278.053 kb on - strand, within Rv0232 at 278.053 kb on - strand, within Rv0232 at 278.076 kb on + strand, within Rv0232 at 278.084 kb on + strand, within Rv0232 at 278.118 kb on + strand, within Rv0232 at 278.118 kb on + strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.119 kb on - strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.430 kb on + strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.431 kb on - strand, within Rv0232 at 278.750 kb on + strand, within Rv0233 at 278.750 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.861 kb on + strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.862 kb on - strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 278.954 kb on + strand, within Rv0233 at 279.068 kb on + strand, within Rv0233 at 279.069 kb on - strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.110 kb on + strand, within Rv0233 at 279.111 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.378 kb on - strand, within Rv0233 at 279.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine 10 mM (N) remove 276,940 + Rv0231 0.52 +1.8 276,941 - Rv0231 0.52 -0.7 276,941 - Rv0231 0.52 +0.1 276,941 - Rv0231 0.52 +0.7 276,988 + Rv0231 0.54 +0.2 276,989 - Rv0231 0.55 -0.3 277,202 + Rv0231 0.67 +0.1 277,225 + Rv0231 0.68 -0.3 277,226 - Rv0231 0.68 -0.3 277,226 - Rv0231 0.68 -0.9 277,510 + Rv0231 0.85 -0.7 277,748 - -0.3 277,762 + -0.4 277,763 - +0.8 277,763 - +1.0 278,011 + Rv0232 0.16 -0.3 278,052 + Rv0232 0.22 +0.8 278,053 - Rv0232 0.22 -0.5 278,053 - Rv0232 0.22 -1.2 278,076 + Rv0232 0.26 -0.4 278,084 + Rv0232 0.27 +0.0 278,118 + Rv0232 0.32 -0.1 278,118 + Rv0232 0.32 -1.7 278,119 - Rv0232 0.32 -0.8 278,119 - Rv0232 0.32 +0.3 278,119 - Rv0232 0.32 -0.4 278,430 + Rv0232 0.77 -1.3 278,430 + Rv0232 0.77 -2.2 278,430 + Rv0232 0.77 -0.0 278,431 - Rv0232 0.77 -0.1 278,431 - Rv0232 0.77 +0.9 278,431 - Rv0232 0.77 -0.2 278,431 - Rv0232 0.77 -0.9 278,750 + Rv0233 0.17 -0.3 278,750 + Rv0233 0.17 -0.4 278,861 + Rv0233 0.29 +0.0 278,861 + Rv0233 0.29 -0.4 278,861 + Rv0233 0.29 +0.1 278,861 + Rv0233 0.29 +0.6 278,861 + Rv0233 0.29 +0.0 278,862 - Rv0233 0.29 -0.7 278,862 - Rv0233 0.29 +0.0 278,862 - Rv0233 0.29 -1.1 278,862 - Rv0233 0.29 +0.1 278,862 - Rv0233 0.29 +1.2 278,862 - Rv0233 0.29 +0.2 278,954 + Rv0233 0.39 -0.5 278,954 + Rv0233 0.39 -0.5 278,954 + Rv0233 0.39 +1.5 279,068 + Rv0233 0.51 +0.1 279,069 - Rv0233 0.51 +0.3 279,110 + Rv0233 0.56 +0.5 279,110 + Rv0233 0.56 +0.6 279,111 - Rv0233 0.56 -0.6 279,378 - Rv0233 0.84 -0.3 279,378 - Rv0233 0.84 -0.7 279,458 + -1.0
Or see this region's nucleotide sequence