Experiment: L-Valine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3664c and Rv3665c are separated by 55 nucleotides Rv3665c and Rv3666c are separated by 1 nucleotides Rv3666c and Rv3667 are separated by 707 nucleotides
Rv3664c: Rv3664c - Probable dipeptide-transport integral membrane protein ABC transporter DppC, at 4,103,675 to 4,104,475
Rv3664c
Rv3665c: Rv3665c - Probable dipeptide-transport integral membrane protein ABC transporter DppB, at 4,104,531 to 4,105,457
Rv3665c
Rv3666c: Rv3666c - Probable periplasmic dipeptide-binding lipoprotein DppA, at 4,105,459 to 4,107,084
Rv3666c
Rv3667: Rv3667 - Acetyl-coenzyme A synthetase Acs (acetate--CoA ligase) (acetyl-CoA synthetase) (acetyl-CoA synthase) (acyl-activating enzyme) (acetate thiokinase) (acetyl-activating enzyme) (acetate--coenzyme A ligase) (acetyl-coenzyme A synthase), at 4,107,792 to 4,109,747
Rv3667
Position (kb)
4105
4106
4107
4108 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4104.482 kb on - strand at 4104.482 kb on - strand at 4105.447 kb on + strand at 4105.998 kb on - strand, within Rv3666c at 4106.337 kb on - strand, within Rv3666c at 4106.362 kb on - strand, within Rv3666c at 4106.528 kb on + strand, within Rv3666c at 4106.730 kb on - strand, within Rv3666c at 4106.876 kb on + strand, within Rv3666c at 4107.438 kb on + strand at 4107.439 kb on - strand at 4107.530 kb on + strand at 4107.667 kb on + strand at 4107.695 kb on + strand at 4107.765 kb on + strand at 4107.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine 10 mM (N) remove 4,104,482 - -0.3 4,104,482 - -0.5 4,105,447 + -0.5 4,105,998 - Rv3666c 0.33 +0.9 4,106,337 - Rv3666c 0.54 -0.0 4,106,362 - Rv3666c 0.56 +0.2 4,106,528 + Rv3666c 0.66 +0.9 4,106,730 - Rv3666c 0.78 +0.0 4,106,876 + Rv3666c 0.87 +2.8 4,107,438 + -0.3 4,107,439 - -0.1 4,107,530 + +2.2 4,107,667 + -0.2 4,107,695 + -0.1 4,107,765 + -0.2 4,107,765 + +0.5
Or see this region's nucleotide sequence