Experiment: L-Valine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2320c and Rv2321c are separated by 0 nucleotides Rv2321c and Rv2322c overlap by 1 nucleotides Rv2322c and Rv2323c overlap by 4 nucleotides
Rv2320c: Rv2320c - Probable cationic amino acid transport integral membrane protein RocE, at 2,592,723 to 2,594,153
Rv2320c
Rv2321c: Rv2321c - Probable ornithine aminotransferase (C-terminus part) RocD2 (ornithine--oxo-acid aminotransferase), at 2,594,154 to 2,594,699
Rv2321c
Rv2322c: Rv2322c - Probable ornithine aminotransferase (N-terminus part) RocD1 (ornithine--oxo-acid aminotransferase), at 2,594,699 to 2,595,364
Rv2322c
Rv2323c: Rv2323c - Conserved protein, at 2,595,361 to 2,596,269
Rv2323c
Position (kb)
2594
2595 Strain fitness (log2 ratio)
-2
-1
0
1 at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.154 kb on - strand, within Rv2320c at 2593.327 kb on + strand, within Rv2320c at 2593.328 kb on - strand, within Rv2320c at 2593.328 kb on - strand, within Rv2320c at 2593.432 kb on + strand, within Rv2320c at 2593.433 kb on - strand, within Rv2320c at 2593.433 kb on - strand, within Rv2320c at 2593.627 kb on - strand, within Rv2320c at 2593.696 kb on - strand, within Rv2320c at 2593.744 kb on + strand, within Rv2320c at 2593.744 kb on + strand, within Rv2320c at 2594.008 kb on - strand, within Rv2320c at 2594.155 kb on + strand at 2594.156 kb on - strand at 2594.257 kb on + strand, within Rv2321c at 2595.229 kb on - strand, within Rv2322c at 2595.603 kb on + strand, within Rv2323c at 2595.621 kb on - strand, within Rv2323c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine 10 mM (N) remove 2,593,154 - Rv2320c 0.30 +0.5 2,593,154 - Rv2320c 0.30 -2.2 2,593,154 - Rv2320c 0.30 -0.1 2,593,154 - Rv2320c 0.30 +0.3 2,593,327 + Rv2320c 0.42 -0.1 2,593,328 - Rv2320c 0.42 -0.0 2,593,328 - Rv2320c 0.42 -0.4 2,593,432 + Rv2320c 0.50 -0.4 2,593,433 - Rv2320c 0.50 -0.3 2,593,433 - Rv2320c 0.50 -0.6 2,593,627 - Rv2320c 0.63 +0.4 2,593,696 - Rv2320c 0.68 +0.3 2,593,744 + Rv2320c 0.71 -0.3 2,593,744 + Rv2320c 0.71 -1.4 2,594,008 - Rv2320c 0.90 -2.7 2,594,155 + -0.3 2,594,156 - -0.4 2,594,257 + Rv2321c 0.19 +0.0 2,595,229 - Rv2322c 0.80 -0.6 2,595,603 + Rv2323c 0.27 -0.5 2,595,621 - Rv2323c 0.29 -1.9
Or see this region's nucleotide sequence