Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1095

Experiment: L-Valine 10 mM (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv1094 and Rv1095 are separated by 210 nucleotidesRv1095 and Rv1096 are separated by 86 nucleotidesRv1096 and Rv1097c are separated by 2 nucleotides Rv1094: Rv1094 - Possible acyl-[acyl-carrier protein] desaturase DesA2 (acyl-[ACP] desaturase) (stearoyl-ACP desaturase), at 1,221,959 to 1,222,786 Rv1094 Rv1095: Rv1095 - Probable PHOH-like protein PhoH2 (phosphate starvation-inducible protein PSIH), at 1,222,997 to 1,224,298 Rv1095 Rv1096: Rv1096 - Possible glycosyl hydrolase, at 1,224,385 to 1,225,260 Rv1096 Rv1097c: Rv1097c - Probable membrane glycine and proline rich protein, at 1,225,263 to 1,226,144 Rv1097c Position (kb) 1222 1223 1224 1225Strain fitness (log2 ratio) -1 0 1at 1222.818 kb on - strandat 1223.016 kb on - strandat 1223.016 kb on - strandat 1223.427 kb on - strand, within Rv1095at 1223.547 kb on + strand, within Rv1095at 1223.865 kb on - strand, within Rv1095at 1223.865 kb on - strand, within Rv1095at 1224.714 kb on + strand, within Rv1096at 1225.100 kb on - strand, within Rv1096at 1225.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine 10 mM (N)
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1,222,818 - +0.6
1,223,016 - -0.1
1,223,016 - -0.3
1,223,427 - Rv1095 0.33 -0.6
1,223,547 + Rv1095 0.42 -0.2
1,223,865 - Rv1095 0.67 -0.2
1,223,865 - Rv1095 0.67 -1.5
1,224,714 + Rv1096 0.38 +0.5
1,225,100 - Rv1096 0.82 -0.2
1,225,259 - -0.1

Or see this region's nucleotide sequence