Experiment: L-Valine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0167 and Rv0168 are separated by 1 nucleotides Rv0168 and Rv0169 are separated by 4 nucleotides
Rv0167: Rv0167 - Conserved integral membrane protein YrbE1A, at 196,861 to 197,658
Rv0167
Rv0168: Rv0168 - Conserved integral membrane protein YrbE1B, at 197,660 to 198,529
Rv0168
Rv0169: Rv0169 - Mce-family protein Mce1A, at 198,534 to 199,898
Rv0169
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 196.684 kb on - strand at 196.700 kb on + strand at 196.701 kb on - strand at 196.757 kb on - strand at 197.091 kb on + strand, within Rv0167 at 197.721 kb on - strand at 197.721 kb on - strand at 197.816 kb on + strand, within Rv0168 at 198.218 kb on - strand, within Rv0168 at 198.257 kb on + strand, within Rv0168 at 198.278 kb on + strand, within Rv0168 at 198.377 kb on + strand, within Rv0168 at 198.378 kb on - strand, within Rv0168 at 198.378 kb on - strand, within Rv0168 at 198.387 kb on - strand, within Rv0168 at 198.577 kb on - strand at 198.632 kb on - strand at 198.632 kb on - strand at 198.634 kb on - strand at 198.730 kb on - strand, within Rv0169 at 198.826 kb on - strand, within Rv0169 at 198.826 kb on - strand, within Rv0169 at 198.891 kb on + strand, within Rv0169 at 198.892 kb on - strand, within Rv0169 at 199.351 kb on - strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.404 kb on + strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.405 kb on - strand, within Rv0169 at 199.441 kb on - strand, within Rv0169 at 199.460 kb on + strand, within Rv0169 at 199.529 kb on + strand, within Rv0169
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine 10 mM (N) remove 196,684 - -0.6 196,700 + +1.8 196,701 - -1.8 196,757 - +0.8 197,091 + Rv0167 0.29 +1.2 197,721 - -0.3 197,721 - -0.4 197,816 + Rv0168 0.18 -1.1 198,218 - Rv0168 0.64 -1.9 198,257 + Rv0168 0.69 -0.1 198,278 + Rv0168 0.71 -1.2 198,377 + Rv0168 0.82 -0.4 198,378 - Rv0168 0.83 -1.6 198,378 - Rv0168 0.83 -0.4 198,387 - Rv0168 0.84 -0.8 198,577 - -0.9 198,632 - +0.1 198,632 - -1.9 198,634 - -0.6 198,730 - Rv0169 0.14 +3.4 198,826 - Rv0169 0.21 -0.8 198,826 - Rv0169 0.21 -0.9 198,891 + Rv0169 0.26 -1.9 198,892 - Rv0169 0.26 -0.6 199,351 - Rv0169 0.60 -0.5 199,404 + Rv0169 0.64 -0.7 199,404 + Rv0169 0.64 +0.2 199,405 - Rv0169 0.64 -1.3 199,405 - Rv0169 0.64 -0.1 199,441 - Rv0169 0.66 -1.2 199,460 + Rv0169 0.68 +0.2 199,529 + Rv0169 0.73 -1.1
Or see this region's nucleotide sequence