Experiment: L-Serine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3608c and Rv3609c overlap by 4 nucleotides Rv3609c and Rv3610c are separated by 15 nucleotides Rv3610c and Rv3611 are separated by 66 nucleotides Rv3611 and Rv3612c overlap by 86 nucleotides Rv3612c and Rv3613c are separated by 33 nucleotides
Rv3608c: Rv3608c - Dihydropteroate synthase 1 FolP (DHPS 1) (dihydropteroate pyrophosphorylase 1) (dihydropteroate diphosphorylase 1), at 4,049,138 to 4,049,980
Rv3608c
Rv3609c: Rv3609c - GTP cyclohydrolase I FolE (GTP-ch-I), at 4,049,977 to 4,050,585
Rv3609c
Rv3610c: Rv3610c - Membrane-bound protease FtsH (cell division protein), at 4,050,601 to 4,052,883
Rv3610c
Rv3611: Rv3611 - Hypothetical arginine and proline rich protein, at 4,052,950 to 4,053,603
Rv3611
Rv3612c: Rv3612c - Conserved hypothetical protein, at 4,053,518 to 4,053,847
Rv3612c
Rv3613c: Rv3613c - Hypothetical protein, at 4,053,881 to 4,054,042
Rv3613c
Position (kb) 4050
4051
4052
4053 Strain fitness (log2 ratio) -1
0
1 at 4050.729 kb on - strand at 4050.729 kb on - strand at 4051.270 kb on - strand, within Rv3610c at 4051.555 kb on - strand, within Rv3610c at 4052.260 kb on - strand, within Rv3610c at 4053.828 kb on + strand at 4053.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine 10 mM (N) remove 4,050,729 - -0.1 4,050,729 - -0.1 4,051,270 - Rv3610c 0.29 +0.3 4,051,555 - Rv3610c 0.42 -0.3 4,052,260 - Rv3610c 0.73 -0.3 4,053,828 + -0.1 4,053,883 - -0.3
Or see this region's nucleotide sequence