Experiment: L-Serine 10 mM (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0394c and Rv0395 are separated by 98 nucleotides Rv0395 and Rv0396 are separated by 5 nucleotides Rv0396 and Rv0397 are separated by 73 nucleotides Rv0397 and Rv0397A are separated by 209 nucleotides Rv0397A and Rv0398c are separated by 36 nucleotides
Rv0394c: Rv0394c - Possible secreted protein, at 474,122 to 474,841
Rv0394c
Rv0395: Rv0395 - Hypothetical protein, at 474,940 to 475,344
Rv0395
Rv0396: Rv0396 - Hypothetical protein, at 475,350 to 475,742
Rv0396
Rv0397: Rv0397 - Conserved 13E12 repeat family protein, at 475,816 to 476,184
Rv0397
Rv0397A: Rv0397A - Conserved protein, at 476,394 to 476,642
Rv0397A
Rv0398c: Rv0398c - Possible secreted protein, at 476,679 to 477,320
Rv0398c
Position (kb) 475
476
477 Strain fitness (log2 ratio) -1
0
1 at 474.841 kb on + strand at 474.842 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 475.140 kb on + strand, within Rv0395 at 475.227 kb on + strand, within Rv0395 at 475.260 kb on - strand, within Rv0395 at 475.326 kb on - strand at 475.326 kb on - strand at 475.342 kb on + strand at 475.343 kb on - strand at 475.343 kb on - strand at 475.369 kb on + strand at 475.438 kb on - strand, within Rv0396 at 475.438 kb on - strand, within Rv0396 at 475.898 kb on - strand, within Rv0397 at 475.898 kb on - strand, within Rv0397 at 475.898 kb on - strand, within Rv0397 at 476.183 kb on - strand at 476.314 kb on + strand at 476.315 kb on - strand at 476.345 kb on + strand at 476.426 kb on - strand, within Rv0397A at 476.545 kb on + strand, within Rv0397A at 476.546 kb on - strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.681 kb on - strand at 476.767 kb on + strand, within Rv0398c at 476.768 kb on - strand, within Rv0398c at 477.134 kb on + strand, within Rv0398c
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine 10 mM (N) remove 474,841 + -0.1 474,842 - -0.5 474,854 - -0.5 474,854 - -0.4 474,854 - -0.5 474,854 - -0.6 475,140 + Rv0395 0.49 -0.4 475,227 + Rv0395 0.71 -0.3 475,260 - Rv0395 0.79 +0.6 475,326 - -0.1 475,326 - +0.1 475,342 + +0.5 475,343 - -0.3 475,343 - -0.1 475,369 + -0.6 475,438 - Rv0396 0.22 -0.8 475,438 - Rv0396 0.22 +0.4 475,898 - Rv0397 0.22 -0.8 475,898 - Rv0397 0.22 -1.0 475,898 - Rv0397 0.22 -0.5 476,183 - -0.7 476,314 + -0.0 476,315 - +0.3 476,345 + +0.1 476,426 - Rv0397A 0.13 -0.8 476,545 + Rv0397A 0.61 +0.1 476,546 - Rv0397A 0.61 -0.8 476,547 + Rv0397A 0.61 -0.4 476,547 + Rv0397A 0.61 -0.7 476,681 - +0.0 476,767 + Rv0398c 0.14 +1.2 476,768 - Rv0398c 0.14 -0.3 477,134 + Rv0398c 0.71 -0.8
Or see this region's nucleotide sequence